co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G20580

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0034053: modulation by symbiont of host defense-related programmed cell death	0.00E+00
2	GO:0001881: receptor recycling	0.00E+00
3	GO:0000740: nuclear membrane fusion	0.00E+00
4	GO:0048870: cell motility	0.00E+00
5	GO:0032211: negative regulation of telomere maintenance via telomerase	0.00E+00
6	GO:0007530: sex determination	0.00E+00
7	GO:0046085: adenosine metabolic process	0.00E+00
8	GO:0090239: regulation of histone H4 acetylation	0.00E+00
9	GO:0006412: translation	1.91E-77
10	GO:0042254: ribosome biogenesis	1.64E-32
11	GO:0000027: ribosomal large subunit assembly	5.74E-08
12	GO:0006511: ubiquitin-dependent protein catabolic process	1.52E-07
13	GO:0000028: ribosomal small subunit assembly	5.63E-05
14	GO:1902626: assembly of large subunit precursor of preribosome	6.29E-05
15	GO:0008333: endosome to lysosome transport	6.29E-05
16	GO:0051603: proteolysis involved in cellular protein catabolic process	8.20E-05
17	GO:0000387: spliceosomal snRNP assembly	1.35E-04
18	GO:0043248: proteasome assembly	4.67E-04
19	GO:0009955: adaxial/abaxial pattern specification	6.20E-04
20	GO:2001006: regulation of cellulose biosynthetic process	6.69E-04
21	GO:0009240: isopentenyl diphosphate biosynthetic process	6.69E-04
22	GO:0043407: negative regulation of MAP kinase activity	6.69E-04
23	GO:0015801: aromatic amino acid transport	6.69E-04
24	GO:0046686: response to cadmium ion	6.90E-04
25	GO:0034599: cellular response to oxidative stress	1.07E-03
26	GO:0042147: retrograde transport, endosome to Golgi	1.12E-03
27	GO:0000398: mRNA splicing, via spliceosome	1.15E-03
28	GO:0010204: defense response signaling pathway, resistance gene-independent	1.20E-03
29	GO:0015991: ATP hydrolysis coupled proton transport	1.23E-03
30	GO:0000413: protein peptidyl-prolyl isomerization	1.23E-03
31	GO:0006662: glycerol ether metabolic process	1.35E-03
32	GO:0009245: lipid A biosynthetic process	1.43E-03
33	GO:0045901: positive regulation of translational elongation	1.44E-03
34	GO:0043981: histone H4-K5 acetylation	1.44E-03
35	GO:0006452: translational frameshifting	1.44E-03
36	GO:0010198: synergid death	1.44E-03
37	GO:0007163: establishment or maintenance of cell polarity	1.44E-03
38	GO:0051788: response to misfolded protein	1.44E-03
39	GO:0006432: phenylalanyl-tRNA aminoacylation	1.44E-03
40	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	1.44E-03
41	GO:0045905: positive regulation of translational termination	1.44E-03
42	GO:0071668: plant-type cell wall assembly	1.44E-03
43	GO:0034243: regulation of transcription elongation from RNA polymerase II promoter	1.44E-03
44	GO:0050992: dimethylallyl diphosphate biosynthetic process	1.44E-03
45	GO:0009651: response to salt stress	1.49E-03
46	GO:0006414: translational elongation	1.54E-03
47	GO:0009965: leaf morphogenesis	1.76E-03
48	GO:0010090: trichome morphogenesis	2.10E-03
49	GO:0010015: root morphogenesis	2.30E-03
50	GO:0006760: folic acid-containing compound metabolic process	2.38E-03
51	GO:0034227: tRNA thio-modification	2.38E-03
52	GO:0010452: histone H3-K36 methylation	2.38E-03
53	GO:0032786: positive regulation of DNA-templated transcription, elongation	2.38E-03
54	GO:0034051: negative regulation of plant-type hypersensitive response	2.38E-03
55	GO:1904278: positive regulation of wax biosynthetic process	2.38E-03
56	GO:0002181: cytoplasmic translation	2.38E-03
57	GO:0046417: chorismate metabolic process	2.38E-03
58	GO:0045793: positive regulation of cell size	2.38E-03
59	GO:0015031: protein transport	2.48E-03
60	GO:0006626: protein targeting to mitochondrion	3.00E-03
61	GO:0045454: cell redox homeostasis	3.04E-03
62	GO:0032877: positive regulation of DNA endoreduplication	3.46E-03
63	GO:0006166: purine ribonucleoside salvage	3.46E-03
64	GO:0070301: cellular response to hydrogen peroxide	3.46E-03
65	GO:0051085: chaperone mediated protein folding requiring cofactor	3.46E-03
66	GO:0006107: oxaloacetate metabolic process	3.46E-03
67	GO:0009647: skotomorphogenesis	3.46E-03
68	GO:0006241: CTP biosynthetic process	3.46E-03
69	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	3.46E-03
70	GO:1901332: negative regulation of lateral root development	3.46E-03
71	GO:0006165: nucleoside diphosphate phosphorylation	3.46E-03
72	GO:0006228: UTP biosynthetic process	3.46E-03
73	GO:0006168: adenine salvage	3.46E-03
74	GO:0009558: embryo sac cellularization	3.46E-03
75	GO:0009735: response to cytokinin	4.06E-03
76	GO:0009165: nucleotide biosynthetic process	4.67E-03
77	GO:0009755: hormone-mediated signaling pathway	4.67E-03
78	GO:0051781: positive regulation of cell division	4.67E-03
79	GO:0010387: COP9 signalosome assembly	4.67E-03
80	GO:0006183: GTP biosynthetic process	4.67E-03
81	GO:0010363: regulation of plant-type hypersensitive response	4.67E-03
82	GO:0006621: protein retention in ER lumen	4.67E-03
83	GO:0006487: protein N-linked glycosylation	4.71E-03
84	GO:0009116: nucleoside metabolic process	4.71E-03
85	GO:0006406: mRNA export from nucleus	4.71E-03
86	GO:0006289: nucleotide-excision repair	4.71E-03
87	GO:0009793: embryo development ending in seed dormancy	5.51E-03
88	GO:0061077: chaperone-mediated protein folding	5.73E-03
89	GO:0044209: AMP salvage	6.01E-03
90	GO:0030041: actin filament polymerization	6.01E-03
91	GO:0006777: Mo-molybdopterin cofactor biosynthetic process	7.46E-03
92	GO:0051568: histone H3-K4 methylation	7.46E-03
93	GO:0006555: methionine metabolic process	7.46E-03
94	GO:0045040: protein import into mitochondrial outer membrane	7.46E-03
95	GO:0008283: cell proliferation	7.54E-03
96	GO:0006457: protein folding	8.61E-03
97	GO:0019509: L-methionine salvage from methylthioadenosine	9.02E-03
98	GO:1901001: negative regulation of response to salt stress	9.02E-03
99	GO:0000911: cytokinesis by cell plate formation	9.02E-03
100	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	9.02E-03
101	GO:0000054: ribosomal subunit export from nucleus	9.02E-03
102	GO:0009554: megasporogenesis	9.02E-03
103	GO:0032880: regulation of protein localization	1.07E-02
104	GO:0048528: post-embryonic root development	1.07E-02
105	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	1.07E-02
106	GO:0000338: protein deneddylation	1.07E-02
107	GO:0006333: chromatin assembly or disassembly	1.07E-02
108	GO:0048825: cotyledon development	1.09E-02
109	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.10E-02
110	GO:0080156: mitochondrial mRNA modification	1.17E-02
111	GO:0045010: actin nucleation	1.25E-02
112	GO:0031540: regulation of anthocyanin biosynthetic process	1.25E-02
113	GO:0009690: cytokinin metabolic process	1.25E-02
114	GO:0006506: GPI anchor biosynthetic process	1.25E-02
115	GO:0009808: lignin metabolic process	1.43E-02
116	GO:0022900: electron transport chain	1.43E-02
117	GO:0001510: RNA methylation	1.43E-02
118	GO:0006914: autophagy	1.43E-02
119	GO:0000902: cell morphogenesis	1.63E-02
120	GO:0010267: production of ta-siRNAs involved in RNA interference	1.84E-02
121	GO:0010449: root meristem growth	1.84E-02
122	GO:0006888: ER to Golgi vesicle-mediated transport	2.01E-02
123	GO:0043069: negative regulation of programmed cell death	2.05E-02
124	GO:0016441: posttranscriptional gene silencing	2.05E-02
125	GO:0006325: chromatin organization	2.05E-02
126	GO:0009870: defense response signaling pathway, resistance gene-dependent	2.05E-02
127	GO:0000103: sulfate assimilation	2.05E-02
128	GO:0006913: nucleocytoplasmic transport	2.27E-02
129	GO:0009073: aromatic amino acid family biosynthetic process	2.27E-02
130	GO:0006352: DNA-templated transcription, initiation	2.27E-02
131	GO:0048229: gametophyte development	2.27E-02
132	GO:0016485: protein processing	2.27E-02
133	GO:0016925: protein sumoylation	2.51E-02
134	GO:0010043: response to zinc ion	2.58E-02
135	GO:0016192: vesicle-mediated transport	2.67E-02
136	GO:2000028: regulation of photoperiodism, flowering	2.75E-02
137	GO:0010628: positive regulation of gene expression	2.75E-02
138	GO:0010102: lateral root morphogenesis	2.75E-02
139	GO:0006807: nitrogen compound metabolic process	2.75E-02
140	GO:0006108: malate metabolic process	2.75E-02
141	GO:0009853: photorespiration	2.83E-02
142	GO:0048467: gynoecium development	2.99E-02
143	GO:0007034: vacuolar transport	2.99E-02
144	GO:0002237: response to molecule of bacterial origin	2.99E-02
145	GO:0010020: chloroplast fission	2.99E-02
146	GO:0006446: regulation of translational initiation	2.99E-02
147	GO:0006413: translational initiation	3.17E-02
148	GO:0010039: response to iron ion	3.25E-02
149	GO:0009908: flower development	3.26E-02
150	GO:0034976: response to endoplasmic reticulum stress	3.51E-02
151	GO:0030150: protein import into mitochondrial matrix	3.78E-02
152	GO:0051302: regulation of cell division	4.05E-02
153	GO:0008299: isoprenoid biosynthetic process	4.05E-02
154	GO:0008380: RNA splicing	4.30E-02
155	GO:0015992: proton transport	4.33E-02
156	GO:0010431: seed maturation	4.33E-02
157	GO:0003333: amino acid transmembrane transport	4.33E-02
158	GO:0007005: mitochondrion organization	4.62E-02
159	GO:0016226: iron-sulfur cluster assembly	4.62E-02
160	GO:0006397: mRNA processing	4.64E-02
161	GO:0006012: galactose metabolic process	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0050152: omega-amidase activity	0.00E+00
2	GO:0061799: cyclic pyranopterin monophosphate synthase activity	0.00E+00
3	GO:0003735: structural constituent of ribosome	2.00E-104
4	GO:0003729: mRNA binding	2.29E-22
5	GO:0004298: threonine-type endopeptidase activity	1.71E-18
6	GO:0008233: peptidase activity	3.71E-09
7	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.97E-06
8	GO:0019843: rRNA binding	5.72E-06
9	GO:0008097: 5S rRNA binding	1.31E-04
10	GO:0001055: RNA polymerase II activity	1.35E-04
11	GO:0001054: RNA polymerase I activity	2.12E-04
12	GO:0004576: oligosaccharyl transferase activity	2.23E-04
13	GO:0001056: RNA polymerase III activity	2.57E-04
14	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	3.35E-04
15	GO:0031177: phosphopantetheine binding	4.67E-04
16	GO:0000035: acyl binding	6.20E-04
17	GO:0035614: snRNA stem-loop binding	6.69E-04
18	GO:0033549: MAP kinase phosphatase activity	6.69E-04
19	GO:0004452: isopentenyl-diphosphate delta-isomerase activity	6.69E-04
20	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	9.83E-04
21	GO:0043022: ribosome binding	9.83E-04
22	GO:0003746: translation elongation factor activity	9.99E-04
23	GO:0047134: protein-disulfide reductase activity	1.12E-03
24	GO:0015173: aromatic amino acid transmembrane transporter activity	1.44E-03
25	GO:1990585: hydroxyproline O-arabinosyltransferase activity	1.44E-03
26	GO:0004106: chorismate mutase activity	1.44E-03
27	GO:0004826: phenylalanine-tRNA ligase activity	1.44E-03
28	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.44E-03
29	GO:0030619: U1 snRNA binding	1.44E-03
30	GO:0004791: thioredoxin-disulfide reductase activity	1.48E-03
31	GO:0003723: RNA binding	1.66E-03
32	GO:0008137: NADH dehydrogenase (ubiquinone) activity	1.77E-03
33	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.10E-03
34	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.33E-03
35	GO:0070180: large ribosomal subunit rRNA binding	2.38E-03
36	GO:0008430: selenium binding	2.38E-03
37	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	2.38E-03
38	GO:0005047: signal recognition particle binding	2.38E-03
39	GO:0032403: protein complex binding	2.38E-03
40	GO:0070181: small ribosomal subunit rRNA binding	2.38E-03
41	GO:0008649: rRNA methyltransferase activity	2.38E-03
42	GO:0004749: ribose phosphate diphosphokinase activity	3.46E-03
43	GO:0000254: C-4 methylsterol oxidase activity	3.46E-03
44	GO:0003999: adenine phosphoribosyltransferase activity	3.46E-03
45	GO:0030527: structural constituent of chromatin	3.46E-03
46	GO:0004550: nucleoside diphosphate kinase activity	3.46E-03
47	GO:0015035: protein disulfide oxidoreductase activity	4.20E-03
48	GO:0010011: auxin binding	4.67E-03
49	GO:0046923: ER retention sequence binding	4.67E-03
50	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	4.67E-03
51	GO:0070628: proteasome binding	4.67E-03
52	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	4.67E-03
53	GO:0000993: RNA polymerase II core binding	4.67E-03
54	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	4.67E-03
55	GO:0005528: FK506 binding	4.71E-03
56	GO:0005275: amine transmembrane transporter activity	6.01E-03
57	GO:0005496: steroid binding	6.01E-03
58	GO:0031386: protein tag	6.01E-03
59	GO:0031593: polyubiquitin binding	7.46E-03
60	GO:0051920: peroxiredoxin activity	9.02E-03
61	GO:0008235: metalloexopeptidase activity	1.07E-02
62	GO:0042162: telomeric DNA binding	1.07E-02
63	GO:0008121: ubiquinol-cytochrome-c reductase activity	1.07E-02
64	GO:0008143: poly(A) binding	1.07E-02
65	GO:0008320: protein transmembrane transporter activity	1.07E-02
66	GO:0004872: receptor activity	1.09E-02
67	GO:0016209: antioxidant activity	1.25E-02
68	GO:0035064: methylated histone binding	1.25E-02
69	GO:0004034: aldose 1-epimerase activity	1.25E-02
70	GO:0015078: hydrogen ion transmembrane transporter activity	1.43E-02
71	GO:0008173: RNA methyltransferase activity	1.43E-02
72	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	1.63E-02
73	GO:0047617: acyl-CoA hydrolase activity	1.84E-02
74	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.23E-02
75	GO:0004177: aminopeptidase activity	2.27E-02
76	GO:0046961: proton-transporting ATPase activity, rotational mechanism	2.27E-02
77	GO:0004129: cytochrome-c oxidase activity	2.27E-02
78	GO:0008794: arsenate reductase (glutaredoxin) activity	2.27E-02
79	GO:0008327: methyl-CpG binding	2.27E-02
80	GO:0000049: tRNA binding	2.51E-02
81	GO:0050897: cobalt ion binding	2.58E-02
82	GO:0004089: carbonate dehydratase activity	2.75E-02
83	GO:0031072: heat shock protein binding	2.75E-02
84	GO:0015266: protein channel activity	2.75E-02
85	GO:0003697: single-stranded DNA binding	2.83E-02
86	GO:0008565: protein transporter activity	2.89E-02
87	GO:0004175: endopeptidase activity	2.99E-02
88	GO:0004725: protein tyrosine phosphatase activity	3.51E-02
89	GO:0043130: ubiquitin binding	3.78E-02
90	GO:0043621: protein self-association	3.94E-02
91	GO:0003743: translation initiation factor activity	4.18E-02

Rank	GO Term	Adjusted P value
1	GO:0016469: proton-transporting two-sector ATPase complex	0.00E+00
2	GO:0043186: P granule	0.00E+00
3	GO:0005675: holo TFIIH complex	0.00E+00
4	GO:0097361: CIA complex	0.00E+00
5	GO:0005840: ribosome	3.00E-79
6	GO:0022626: cytosolic ribosome	5.17E-70
7	GO:0022625: cytosolic large ribosomal subunit	3.32E-62
8	GO:0022627: cytosolic small ribosomal subunit	2.86E-40
9	GO:0005829: cytosol	7.05E-30
10	GO:0005737: cytoplasm	1.11E-24
11	GO:0005730: nucleolus	1.65E-21
12	GO:0005839: proteasome core complex	1.71E-18
13	GO:0000502: proteasome complex	6.51E-18
14	GO:0005774: vacuolar membrane	6.97E-12
15	GO:0009506: plasmodesma	2.34E-10
16	GO:0019773: proteasome core complex, alpha-subunit complex	3.10E-08
17	GO:0005773: vacuole	7.85E-08
18	GO:0016020: membrane	4.72E-07
19	GO:0015934: large ribosomal subunit	8.65E-07
20	GO:0005747: mitochondrial respiratory chain complex I	1.36E-06
21	GO:0005665: DNA-directed RNA polymerase II, core complex	1.38E-05
22	GO:0030904: retromer complex	1.50E-05
23	GO:0000419: DNA-directed RNA polymerase V complex	3.80E-05
24	GO:0015935: small ribosomal subunit	6.91E-05
25	GO:0005736: DNA-directed RNA polymerase I complex	1.04E-04
26	GO:0071011: precatalytic spliceosome	1.35E-04
27	GO:0005666: DNA-directed RNA polymerase III complex	1.35E-04
28	GO:0071013: catalytic step 2 spliceosome	2.12E-04
29	GO:0005732: small nucleolar ribonucleoprotein complex	2.16E-04
30	GO:0019013: viral nucleocapsid	3.08E-04
31	GO:0008250: oligosaccharyltransferase complex	3.35E-04
32	GO:0005750: mitochondrial respiratory chain complex III	3.64E-04
33	GO:0009507: chloroplast	4.25E-04
34	GO:0005771: multivesicular body	4.67E-04
35	GO:0005662: DNA replication factor A complex	6.69E-04
36	GO:0032044: DSIF complex	6.69E-04
37	GO:0019774: proteasome core complex, beta-subunit complex	6.69E-04
38	GO:0000421: autophagosome membrane	9.83E-04
39	GO:0005618: cell wall	1.20E-03
40	GO:0005742: mitochondrial outer membrane translocase complex	1.20E-03
41	GO:0005685: U1 snRNP	1.43E-03
42	GO:0035145: exon-exon junction complex	1.44E-03
43	GO:0005697: telomerase holoenzyme complex	1.44E-03
44	GO:0000418: DNA-directed RNA polymerase IV complex	1.98E-03
45	GO:0008541: proteasome regulatory particle, lid subcomplex	2.30E-03
46	GO:0000439: core TFIIH complex	2.38E-03
47	GO:0034719: SMN-Sm protein complex	2.38E-03
48	GO:0005838: proteasome regulatory particle	2.38E-03
49	GO:0005853: eukaryotic translation elongation factor 1 complex	2.38E-03
50	GO:0005681: spliceosomal complex	3.02E-03
51	GO:0005788: endoplasmic reticulum lumen	3.06E-03
52	GO:0033180: proton-transporting V-type ATPase, V1 domain	3.46E-03
53	GO:1990726: Lsm1-7-Pat1 complex	3.46E-03
54	GO:0005753: mitochondrial proton-transporting ATP synthase complex	3.80E-03
55	GO:0016471: vacuolar proton-transporting V-type ATPase complex	4.67E-03
56	GO:0016593: Cdc73/Paf1 complex	4.67E-03
57	GO:0005682: U5 snRNP	4.67E-03
58	GO:0000445: THO complex part of transcription export complex	4.67E-03
59	GO:0033179: proton-transporting V-type ATPase, V0 domain	4.67E-03
60	GO:0005758: mitochondrial intermembrane space	4.71E-03
61	GO:0070469: respiratory chain	5.21E-03
62	GO:0045271: respiratory chain complex I	5.21E-03
63	GO:0005687: U4 snRNP	6.01E-03
64	GO:0097526: spliceosomal tri-snRNP complex	6.01E-03
65	GO:0005746: mitochondrial respiratory chain	6.01E-03
66	GO:0031410: cytoplasmic vesicle	6.28E-03
67	GO:0031902: late endosome membrane	6.79E-03
68	GO:0000974: Prp19 complex	7.46E-03
69	GO:0032588: trans-Golgi network membrane	7.46E-03
70	GO:0031209: SCAR complex	7.46E-03
71	GO:0005759: mitochondrial matrix	8.03E-03
72	GO:0005762: mitochondrial large ribosomal subunit	9.02E-03
73	GO:0005689: U12-type spliceosomal complex	9.02E-03
74	GO:0005801: cis-Golgi network	9.02E-03
75	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	1.07E-02
76	GO:0000347: THO complex	1.07E-02
77	GO:0045273: respiratory chain complex II	1.25E-02
78	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	1.25E-02
79	GO:0005688: U6 snRNP	1.25E-02
80	GO:0071004: U2-type prespliceosome	1.25E-02
81	GO:0046540: U4/U6 x U5 tri-snRNP complex	1.43E-02
82	GO:0005763: mitochondrial small ribosomal subunit	1.63E-02
83	GO:0008180: COP9 signalosome	1.63E-02
84	GO:0005783: endoplasmic reticulum	1.70E-02
85	GO:0015030: Cajal body	1.84E-02
86	GO:0005686: U2 snRNP	2.05E-02
87	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	2.06E-02
88	GO:0005852: eukaryotic translation initiation factor 3 complex	2.27E-02
89	GO:0005789: endoplasmic reticulum membrane	2.33E-02
90	GO:0031307: integral component of mitochondrial outer membrane	2.51E-02
91	GO:0009508: plastid chromosome	2.75E-02
92	GO:0005886: plasma membrane	3.09E-02
93	GO:0005769: early endosome	3.51E-02
94	GO:0005794: Golgi apparatus	3.80E-02
95	GO:0005622: intracellular	4.15E-02
96	GO:0031966: mitochondrial membrane	4.57E-02