co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G20430

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0007530: sex determination	0.00E+00
2	GO:0036172: thiamine salvage	0.00E+00
3	GO:0046085: adenosine metabolic process	0.00E+00
4	GO:0009236: cobalamin biosynthetic process	0.00E+00
5	GO:0006044: N-acetylglucosamine metabolic process	0.00E+00
6	GO:0048870: cell motility	0.00E+00
7	GO:0032211: negative regulation of telomere maintenance via telomerase	0.00E+00
8	GO:0070207: protein homotrimerization	0.00E+00
9	GO:0051776: detection of redox state	0.00E+00
10	GO:0015822: ornithine transport	0.00E+00
11	GO:0006412: translation	5.20E-41
12	GO:0042254: ribosome biogenesis	2.55E-19
13	GO:0009853: photorespiration	1.66E-13
14	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	3.28E-09
15	GO:0000028: ribosomal small subunit assembly	5.92E-05
16	GO:0009245: lipid A biosynthetic process	1.10E-04
17	GO:0006241: CTP biosynthetic process	1.36E-04
18	GO:0006165: nucleoside diphosphate phosphorylation	1.36E-04
19	GO:0006228: UTP biosynthetic process	1.36E-04
20	GO:0006183: GTP biosynthetic process	2.31E-04
21	GO:0006796: phosphate-containing compound metabolic process	4.84E-04
22	GO:0000027: ribosomal large subunit assembly	5.87E-04
23	GO:0031539: positive regulation of anthocyanin metabolic process	6.85E-04
24	GO:0031468: nuclear envelope reassembly	6.85E-04
25	GO:0000066: mitochondrial ornithine transport	6.85E-04
26	GO:2001006: regulation of cellulose biosynthetic process	6.85E-04
27	GO:0019354: siroheme biosynthetic process	6.85E-04
28	GO:0009240: isopentenyl diphosphate biosynthetic process	6.85E-04
29	GO:0015992: proton transport	7.54E-04
30	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	8.18E-04
31	GO:0022900: electron transport chain	1.24E-03
32	GO:0007163: establishment or maintenance of cell polarity	1.48E-03
33	GO:0006432: phenylalanyl-tRNA aminoacylation	1.48E-03
34	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	1.48E-03
35	GO:0080026: response to indolebutyric acid	1.48E-03
36	GO:0045905: positive regulation of translational termination	1.48E-03
37	GO:0071668: plant-type cell wall assembly	1.48E-03
38	GO:0019441: tryptophan catabolic process to kynurenine	1.48E-03
39	GO:0034243: regulation of transcription elongation from RNA polymerase II promoter	1.48E-03
40	GO:0050992: dimethylallyl diphosphate biosynthetic process	1.48E-03
41	GO:0045901: positive regulation of translational elongation	1.48E-03
42	GO:0006452: translational frameshifting	1.48E-03
43	GO:0000387: spliceosomal snRNP assembly	1.75E-03
44	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	2.44E-03
45	GO:0032786: positive regulation of DNA-templated transcription, elongation	2.44E-03
46	GO:1902626: assembly of large subunit precursor of preribosome	2.44E-03
47	GO:0002181: cytoplasmic translation	2.44E-03
48	GO:0046417: chorismate metabolic process	2.44E-03
49	GO:0015940: pantothenate biosynthetic process	2.44E-03
50	GO:0071492: cellular response to UV-A	2.44E-03
51	GO:0045793: positive regulation of cell size	2.44E-03
52	GO:0006760: folic acid-containing compound metabolic process	2.44E-03
53	GO:0034227: tRNA thio-modification	2.44E-03
54	GO:0006626: protein targeting to mitochondrion	3.10E-03
55	GO:0045454: cell redox homeostasis	3.26E-03
56	GO:0009052: pentose-phosphate shunt, non-oxidative branch	3.54E-03
57	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	3.54E-03
58	GO:1901332: negative regulation of lateral root development	3.54E-03
59	GO:0009963: positive regulation of flavonoid biosynthetic process	3.54E-03
60	GO:0006168: adenine salvage	3.54E-03
61	GO:0080024: indolebutyric acid metabolic process	3.54E-03
62	GO:0032877: positive regulation of DNA endoreduplication	3.54E-03
63	GO:1902358: sulfate transmembrane transport	3.54E-03
64	GO:0006166: purine ribonucleoside salvage	3.54E-03
65	GO:0070301: cellular response to hydrogen peroxide	3.54E-03
66	GO:0006107: oxaloacetate metabolic process	3.54E-03
67	GO:0006221: pyrimidine nucleotide biosynthetic process	4.78E-03
68	GO:0044205: 'de novo' UMP biosynthetic process	4.78E-03
69	GO:0006749: glutathione metabolic process	4.78E-03
70	GO:0032366: intracellular sterol transport	4.78E-03
71	GO:0009165: nucleotide biosynthetic process	4.78E-03
72	GO:0010109: regulation of photosynthesis	4.78E-03
73	GO:0051781: positive regulation of cell division	4.78E-03
74	GO:0071486: cellular response to high light intensity	4.78E-03
75	GO:0009765: photosynthesis, light harvesting	4.78E-03
76	GO:0071249: cellular response to nitrate	4.78E-03
77	GO:0006487: protein N-linked glycosylation	4.88E-03
78	GO:0009116: nucleoside metabolic process	4.88E-03
79	GO:0006099: tricarboxylic acid cycle	6.02E-03
80	GO:0030041: actin filament polymerization	6.15E-03
81	GO:0009229: thiamine diphosphate biosynthetic process	6.15E-03
82	GO:0044209: AMP salvage	6.15E-03
83	GO:0016226: iron-sulfur cluster assembly	6.50E-03
84	GO:0006012: galactose metabolic process	7.10E-03
85	GO:0045040: protein import into mitochondrial outer membrane	7.64E-03
86	GO:0009117: nucleotide metabolic process	7.64E-03
87	GO:0006574: valine catabolic process	7.64E-03
88	GO:0009228: thiamine biosynthetic process	7.64E-03
89	GO:0006777: Mo-molybdopterin cofactor biosynthetic process	7.64E-03
90	GO:0006555: methionine metabolic process	7.64E-03
91	GO:0043248: proteasome assembly	7.64E-03
92	GO:0009651: response to salt stress	8.16E-03
93	GO:0080022: primary root development	9.08E-03
94	GO:0015991: ATP hydrolysis coupled proton transport	9.08E-03
95	GO:0000054: ribosomal subunit export from nucleus	9.24E-03
96	GO:0009955: adaxial/abaxial pattern specification	9.24E-03
97	GO:0019509: L-methionine salvage from methylthioadenosine	9.24E-03
98	GO:0055114: oxidation-reduction process	1.02E-02
99	GO:0015986: ATP synthesis coupled proton transport	1.06E-02
100	GO:0022904: respiratory electron transport chain	1.10E-02
101	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	1.10E-02
102	GO:0032880: regulation of protein localization	1.10E-02
103	GO:0009735: response to cytokinin	1.27E-02
104	GO:0009787: regulation of abscisic acid-activated signaling pathway	1.28E-02
105	GO:0009690: cytokinin metabolic process	1.28E-02
106	GO:0006506: GPI anchor biosynthetic process	1.28E-02
107	GO:0045010: actin nucleation	1.28E-02
108	GO:0048658: anther wall tapetum development	1.28E-02
109	GO:0040029: regulation of gene expression, epigenetic	1.28E-02
110	GO:0009231: riboflavin biosynthetic process	1.28E-02
111	GO:0009793: embryo development ending in seed dormancy	1.37E-02
112	GO:0010090: trichome morphogenesis	1.39E-02
113	GO:0009808: lignin metabolic process	1.47E-02
114	GO:0010099: regulation of photomorphogenesis	1.47E-02
115	GO:0080144: amino acid homeostasis	1.67E-02
116	GO:0006754: ATP biosynthetic process	1.67E-02
117	GO:0048589: developmental growth	1.67E-02
118	GO:0009060: aerobic respiration	1.67E-02
119	GO:0000902: cell morphogenesis	1.67E-02
120	GO:0098656: anion transmembrane transport	1.67E-02
121	GO:0046685: response to arsenic-containing substance	1.67E-02
122	GO:1900865: chloroplast RNA modification	1.88E-02
123	GO:0006325: chromatin organization	2.10E-02
124	GO:0043069: negative regulation of programmed cell death	2.10E-02
125	GO:0000398: mRNA splicing, via spliceosome	2.18E-02
126	GO:0072593: reactive oxygen species metabolic process	2.33E-02
127	GO:0009073: aromatic amino acid family biosynthetic process	2.33E-02
128	GO:0006378: mRNA polyadenylation	2.33E-02
129	GO:0006820: anion transport	2.57E-02
130	GO:0010152: pollen maturation	2.57E-02
131	GO:0016925: protein sumoylation	2.57E-02
132	GO:0046686: response to cadmium ion	2.62E-02
133	GO:0010628: positive regulation of gene expression	2.81E-02
134	GO:0010102: lateral root morphogenesis	2.81E-02
135	GO:0006108: malate metabolic process	2.81E-02
136	GO:0006807: nitrogen compound metabolic process	2.81E-02
137	GO:0006006: glucose metabolic process	2.81E-02
138	GO:0010020: chloroplast fission	3.07E-02
139	GO:0006633: fatty acid biosynthetic process	3.21E-02
140	GO:0006414: translational elongation	3.21E-02
141	GO:0007030: Golgi organization	3.33E-02
142	GO:0009901: anther dehiscence	3.33E-02
143	GO:0010039: response to iron ion	3.33E-02
144	GO:0042753: positive regulation of circadian rhythm	3.60E-02
145	GO:0034976: response to endoplasmic reticulum stress	3.60E-02
146	GO:0006071: glycerol metabolic process	3.60E-02
147	GO:0009926: auxin polar transport	3.78E-02
148	GO:0015031: protein transport	3.86E-02
149	GO:0030150: protein import into mitochondrial matrix	3.87E-02
150	GO:0006406: mRNA export from nucleus	3.87E-02
151	GO:0006289: nucleotide-excision repair	3.87E-02
152	GO:2000377: regulation of reactive oxygen species metabolic process	3.87E-02
153	GO:0008299: isoprenoid biosynthetic process	4.15E-02
154	GO:0051302: regulation of cell division	4.15E-02
155	GO:0019915: lipid storage	4.44E-02
156	GO:0061077: chaperone-mediated protein folding	4.44E-02
157	GO:0010431: seed maturation	4.44E-02
158	GO:0010017: red or far-red light signaling pathway	4.73E-02
159	GO:0007005: mitochondrion organization	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0050152: omega-amidase activity	0.00E+00
2	GO:0004343: glucosamine 6-phosphate N-acetyltransferase activity	0.00E+00
3	GO:0051266: sirohydrochlorin ferrochelatase activity	0.00E+00
4	GO:0004746: riboflavin synthase activity	0.00E+00
5	GO:0061799: cyclic pyranopterin monophosphate synthase activity	0.00E+00
6	GO:0004151: dihydroorotase activity	0.00E+00
7	GO:0016852: sirohydrochlorin cobaltochelatase activity	0.00E+00
8	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
9	GO:0003735: structural constituent of ribosome	3.69E-57
10	GO:0003729: mRNA binding	5.47E-09
11	GO:0008121: ubiquinol-cytochrome-c reductase activity	7.77E-07
12	GO:0019843: rRNA binding	6.48E-06
13	GO:0004129: cytochrome-c oxidase activity	1.09E-05
14	GO:0031177: phosphopantetheine binding	1.58E-05
15	GO:0008137: NADH dehydrogenase (ubiquinone) activity	2.42E-05
16	GO:0000035: acyl binding	2.64E-05
17	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	5.92E-05
18	GO:0004550: nucleoside diphosphate kinase activity	1.36E-04
19	GO:0001055: RNA polymerase II activity	1.42E-04
20	GO:0004576: oligosaccharyl transferase activity	2.31E-04
21	GO:0010011: auxin binding	2.31E-04
22	GO:0004089: carbonate dehydratase activity	3.23E-04
23	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	3.47E-04
24	GO:0004452: isopentenyl-diphosphate delta-isomerase activity	6.85E-04
25	GO:0030611: arsenate reductase activity	6.85E-04
26	GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity	6.85E-04
27	GO:0004427: inorganic diphosphatase activity	8.18E-04
28	GO:0050897: cobalt ion binding	9.16E-04
29	GO:0004034: aldose 1-epimerase activity	1.01E-03
30	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.41E-03
31	GO:0004106: chorismate mutase activity	1.48E-03
32	GO:0004061: arylformamidase activity	1.48E-03
33	GO:0000064: L-ornithine transmembrane transporter activity	1.48E-03
34	GO:0004826: phenylalanine-tRNA ligase activity	1.48E-03
35	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.48E-03
36	GO:0047364: desulfoglucosinolate sulfotransferase activity	1.48E-03
37	GO:0047617: acyl-CoA hydrolase activity	1.75E-03
38	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.97E-03
39	GO:0008794: arsenate reductase (glutaredoxin) activity	2.38E-03
40	GO:0001054: RNA polymerase I activity	2.38E-03
41	GO:0032403: protein complex binding	2.44E-03
42	GO:0008649: rRNA methyltransferase activity	2.44E-03
43	GO:0004557: alpha-galactosidase activity	2.44E-03
44	GO:0004751: ribose-5-phosphate isomerase activity	2.44E-03
45	GO:0052692: raffinose alpha-galactosidase activity	2.44E-03
46	GO:0070180: large ribosomal subunit rRNA binding	2.44E-03
47	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	2.44E-03
48	GO:0008430: selenium binding	2.44E-03
49	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	2.44E-03
50	GO:0005047: signal recognition particle binding	2.44E-03
51	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.46E-03
52	GO:0001056: RNA polymerase III activity	2.73E-03
53	GO:0035529: NADH pyrophosphatase activity	3.54E-03
54	GO:0003999: adenine phosphoribosyltransferase activity	3.54E-03
55	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	3.54E-03
56	GO:0004749: ribose phosphate diphosphokinase activity	3.54E-03
57	GO:0000254: C-4 methylsterol oxidase activity	3.54E-03
58	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	4.78E-03
59	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	4.78E-03
60	GO:0000993: RNA polymerase II core binding	4.78E-03
61	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	4.78E-03
62	GO:0003746: translation elongation factor activity	5.69E-03
63	GO:0004298: threonine-type endopeptidase activity	5.93E-03
64	GO:0016651: oxidoreductase activity, acting on NAD(P)H	6.15E-03
65	GO:0005496: steroid binding	6.15E-03
66	GO:0031386: protein tag	6.15E-03
67	GO:0051117: ATPase binding	7.64E-03
68	GO:0016462: pyrophosphatase activity	7.64E-03
69	GO:0051537: 2 iron, 2 sulfur cluster binding	8.72E-03
70	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	9.24E-03
71	GO:0004602: glutathione peroxidase activity	9.24E-03
72	GO:0051920: peroxiredoxin activity	9.24E-03
73	GO:0008080: N-acetyltransferase activity	9.80E-03
74	GO:0042162: telomeric DNA binding	1.10E-02
75	GO:0008143: poly(A) binding	1.10E-02
76	GO:0008320: protein transmembrane transporter activity	1.10E-02
77	GO:0043022: ribosome binding	1.28E-02
78	GO:0015288: porin activity	1.28E-02
79	GO:0016209: antioxidant activity	1.28E-02
80	GO:0035064: methylated histone binding	1.28E-02
81	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.39E-02
82	GO:0008271: secondary active sulfate transmembrane transporter activity	1.47E-02
83	GO:0008308: voltage-gated anion channel activity	1.47E-02
84	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.67E-02
85	GO:0015035: protein disulfide oxidoreductase activity	1.88E-02
86	GO:0016788: hydrolase activity, acting on ester bonds	1.95E-02
87	GO:0008047: enzyme activator activity	2.10E-02
88	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.31E-02
89	GO:0046961: proton-transporting ATPase activity, rotational mechanism	2.33E-02
90	GO:0000049: tRNA binding	2.57E-02
91	GO:0015116: sulfate transmembrane transporter activity	2.57E-02
92	GO:0015266: protein channel activity	2.81E-02
93	GO:0003824: catalytic activity	2.88E-02
94	GO:0008146: sulfotransferase activity	3.33E-02
95	GO:0051539: 4 iron, 4 sulfur cluster binding	3.34E-02
96	GO:0046872: metal ion binding	3.54E-02
97	GO:0004725: protein tyrosine phosphatase activity	3.60E-02
98	GO:0005528: FK506 binding	3.87E-02
99	GO:0051536: iron-sulfur cluster binding	3.87E-02
100	GO:0043130: ubiquitin binding	3.87E-02
101	GO:0051287: NAD binding	4.56E-02
102	GO:0003723: RNA binding	4.83E-02
103	GO:0042802: identical protein binding	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0097361: CIA complex	0.00E+00
2	GO:0016469: proton-transporting two-sector ATPase complex	0.00E+00
3	GO:0043186: P granule	0.00E+00
4	GO:0005675: holo TFIIH complex	0.00E+00
5	GO:0005840: ribosome	1.11E-48
6	GO:0022625: cytosolic large ribosomal subunit	4.04E-35
7	GO:0022626: cytosolic ribosome	3.91E-30
8	GO:0005747: mitochondrial respiratory chain complex I	1.21E-21
9	GO:0022627: cytosolic small ribosomal subunit	3.99E-20
10	GO:0045271: respiratory chain complex I	9.75E-19
11	GO:0031966: mitochondrial membrane	3.62E-12
12	GO:0005829: cytosol	6.47E-12
13	GO:0005730: nucleolus	4.09E-10
14	GO:0005737: cytoplasm	7.34E-09
15	GO:0005750: mitochondrial respiratory chain complex III	1.98E-08
16	GO:0005774: vacuolar membrane	4.67E-08
17	GO:0016020: membrane	2.84E-07
18	GO:0005739: mitochondrion	1.15E-06
19	GO:0005753: mitochondrial proton-transporting ATP synthase complex	1.21E-06
20	GO:0005758: mitochondrial intermembrane space	2.23E-06
21	GO:0005665: DNA-directed RNA polymerase II, core complex	1.48E-05
22	GO:0009536: plastid	3.13E-05
23	GO:0000419: DNA-directed RNA polymerase V complex	4.06E-05
24	GO:0045273: respiratory chain complex II	5.92E-05
25	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	5.92E-05
26	GO:0005773: vacuole	6.18E-05
27	GO:0015934: large ribosomal subunit	1.44E-04
28	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	2.31E-04
29	GO:0005732: small nucleolar ribonucleoprotein complex	2.33E-04
30	GO:0008250: oligosaccharyltransferase complex	3.47E-04
31	GO:0070469: respiratory chain	6.67E-04
32	GO:0032044: DSIF complex	6.85E-04
33	GO:0005783: endoplasmic reticulum	1.22E-03
34	GO:0009506: plasmodesma	1.23E-03
35	GO:0005742: mitochondrial outer membrane translocase complex	1.24E-03
36	GO:0035145: exon-exon junction complex	1.48E-03
37	GO:0005697: telomerase holoenzyme complex	1.48E-03
38	GO:0005736: DNA-directed RNA polymerase I complex	1.48E-03
39	GO:0005666: DNA-directed RNA polymerase III complex	1.75E-03
40	GO:0071011: precatalytic spliceosome	1.75E-03
41	GO:0009507: chloroplast	1.94E-03
42	GO:0000418: DNA-directed RNA polymerase IV complex	2.05E-03
43	GO:0071013: catalytic step 2 spliceosome	2.38E-03
44	GO:0034719: SMN-Sm protein complex	2.44E-03
45	GO:0005853: eukaryotic translation elongation factor 1 complex	2.44E-03
46	GO:0000439: core TFIIH complex	2.44E-03
47	GO:0000502: proteasome complex	2.46E-03
48	GO:0019013: viral nucleocapsid	3.10E-03
49	GO:0033180: proton-transporting V-type ATPase, V1 domain	3.54E-03
50	GO:1990726: Lsm1-7-Pat1 complex	3.54E-03
51	GO:0005849: mRNA cleavage factor complex	3.54E-03
52	GO:0005682: U5 snRNP	4.78E-03
53	GO:0016471: vacuolar proton-transporting V-type ATPase complex	4.78E-03
54	GO:0015935: small ribosomal subunit	5.93E-03
55	GO:0005839: proteasome core complex	5.93E-03
56	GO:0016591: DNA-directed RNA polymerase II, holoenzyme	6.15E-03
57	GO:0005687: U4 snRNP	6.15E-03
58	GO:0097526: spliceosomal tri-snRNP complex	6.15E-03
59	GO:0005746: mitochondrial respiratory chain	6.15E-03
60	GO:0031209: SCAR complex	7.64E-03
61	GO:0032588: trans-Golgi network membrane	7.64E-03
62	GO:0005759: mitochondrial matrix	8.46E-03
63	GO:0005762: mitochondrial large ribosomal subunit	9.24E-03
64	GO:0005689: U12-type spliceosomal complex	9.24E-03
65	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	1.10E-02
66	GO:0005688: U6 snRNP	1.28E-02
67	GO:0000421: autophagosome membrane	1.28E-02
68	GO:0071004: U2-type prespliceosome	1.28E-02
69	GO:0005618: cell wall	1.33E-02
70	GO:0046540: U4/U6 x U5 tri-snRNP complex	1.47E-02
71	GO:0046930: pore complex	1.47E-02
72	GO:0019773: proteasome core complex, alpha-subunit complex	1.47E-02
73	GO:0005685: U1 snRNP	1.67E-02
74	GO:0005763: mitochondrial small ribosomal subunit	1.67E-02
75	GO:0005788: endoplasmic reticulum lumen	1.87E-02
76	GO:0005777: peroxisome	1.97E-02
77	GO:0005740: mitochondrial envelope	2.10E-02
78	GO:0005686: U2 snRNP	2.10E-02
79	GO:0008541: proteasome regulatory particle, lid subcomplex	2.33E-02
80	GO:0031307: integral component of mitochondrial outer membrane	2.57E-02
81	GO:0009508: plastid chromosome	2.81E-02
82	GO:0005741: mitochondrial outer membrane	4.44E-02
83	GO:0031410: cytoplasmic vesicle	4.73E-02