co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G19715

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000505: regulation of energy homeostasis	0.00E+00
2	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
3	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
4	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
5	GO:0007172: signal complex assembly	0.00E+00
6	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
7	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
8	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
9	GO:0070125: mitochondrial translational elongation	0.00E+00
10	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
11	GO:0010027: thylakoid membrane organization	8.12E-10
12	GO:0010021: amylopectin biosynthetic process	9.64E-06
13	GO:0009642: response to light intensity	6.06E-05
14	GO:0015979: photosynthesis	6.26E-05
15	GO:0010206: photosystem II repair	9.49E-05
16	GO:0006438: valyl-tRNA aminoacylation	1.04E-04
17	GO:0043953: protein transport by the Tat complex	1.04E-04
18	GO:0000481: maturation of 5S rRNA	1.04E-04
19	GO:0042371: vitamin K biosynthetic process	1.04E-04
20	GO:0065002: intracellular protein transmembrane transport	1.04E-04
21	GO:0043686: co-translational protein modification	1.04E-04
22	GO:0043609: regulation of carbon utilization	1.04E-04
23	GO:0043007: maintenance of rDNA	1.04E-04
24	GO:0034337: RNA folding	1.04E-04
25	GO:0018298: protein-chromophore linkage	1.23E-04
26	GO:0009773: photosynthetic electron transport in photosystem I	1.61E-04
27	GO:0043085: positive regulation of catalytic activity	1.61E-04
28	GO:0006432: phenylalanyl-tRNA aminoacylation	2.44E-04
29	GO:0018026: peptidyl-lysine monomethylation	2.44E-04
30	GO:0090342: regulation of cell aging	2.44E-04
31	GO:0097054: L-glutamate biosynthetic process	2.44E-04
32	GO:0006418: tRNA aminoacylation for protein translation	3.76E-04
33	GO:0009768: photosynthesis, light harvesting in photosystem I	3.76E-04
34	GO:0006000: fructose metabolic process	4.05E-04
35	GO:0090391: granum assembly	4.05E-04
36	GO:0005977: glycogen metabolic process	4.05E-04
37	GO:0006537: glutamate biosynthetic process	5.82E-04
38	GO:0009052: pentose-phosphate shunt, non-oxidative branch	5.82E-04
39	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	5.82E-04
40	GO:0006020: inositol metabolic process	5.82E-04
41	GO:0006662: glycerol ether metabolic process	6.70E-04
42	GO:0019252: starch biosynthetic process	7.69E-04
43	GO:0006109: regulation of carbohydrate metabolic process	7.73E-04
44	GO:0015994: chlorophyll metabolic process	7.73E-04
45	GO:0051205: protein insertion into membrane	7.73E-04
46	GO:0006021: inositol biosynthetic process	7.73E-04
47	GO:0010106: cellular response to iron ion starvation	7.73E-04
48	GO:0019676: ammonia assimilation cycle	7.73E-04
49	GO:0015976: carbon utilization	7.73E-04
50	GO:0032543: mitochondrial translation	9.77E-04
51	GO:0010236: plastoquinone biosynthetic process	9.77E-04
52	GO:0045038: protein import into chloroplast thylakoid membrane	9.77E-04
53	GO:0031365: N-terminal protein amino acid modification	9.77E-04
54	GO:0046855: inositol phosphate dephosphorylation	1.19E-03
55	GO:0042793: transcription from plastid promoter	1.19E-03
56	GO:0042549: photosystem II stabilization	1.19E-03
57	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.19E-03
58	GO:0009793: embryo development ending in seed dormancy	1.38E-03
59	GO:0016311: dephosphorylation	1.43E-03
60	GO:0042372: phylloquinone biosynthetic process	1.43E-03
61	GO:0010218: response to far red light	1.66E-03
62	GO:0009772: photosynthetic electron transport in photosystem II	1.67E-03
63	GO:0010196: nonphotochemical quenching	1.67E-03
64	GO:0009853: photorespiration	1.90E-03
65	GO:0009637: response to blue light	1.90E-03
66	GO:0048564: photosystem I assembly	1.93E-03
67	GO:0005978: glycogen biosynthetic process	1.93E-03
68	GO:0032508: DNA duplex unwinding	1.93E-03
69	GO:0016559: peroxisome fission	1.93E-03
70	GO:0034599: cellular response to oxidative stress	1.98E-03
71	GO:0006002: fructose 6-phosphate metabolic process	2.21E-03
72	GO:0009657: plastid organization	2.21E-03
73	GO:0017004: cytochrome complex assembly	2.21E-03
74	GO:0010114: response to red light	2.44E-03
75	GO:0005982: starch metabolic process	2.79E-03
76	GO:0048829: root cap development	3.10E-03
77	GO:0006415: translational termination	3.42E-03
78	GO:0019684: photosynthesis, light reaction	3.42E-03
79	GO:0009089: lysine biosynthetic process via diaminopimelate	3.42E-03
80	GO:0009073: aromatic amino acid family biosynthetic process	3.42E-03
81	GO:0006790: sulfur compound metabolic process	3.75E-03
82	GO:0010628: positive regulation of gene expression	4.09E-03
83	GO:0006006: glucose metabolic process	4.09E-03
84	GO:0010020: chloroplast fission	4.44E-03
85	GO:0019253: reductive pentose-phosphate cycle	4.44E-03
86	GO:0010207: photosystem II assembly	4.44E-03
87	GO:0009934: regulation of meristem structural organization	4.44E-03
88	GO:0046854: phosphatidylinositol phosphorylation	4.80E-03
89	GO:0008299: isoprenoid biosynthetic process	5.95E-03
90	GO:0061077: chaperone-mediated protein folding	6.35E-03
91	GO:0006413: translational initiation	7.46E-03
92	GO:0009561: megagametogenesis	7.61E-03
93	GO:0055114: oxidation-reduction process	7.74E-03
94	GO:0016117: carotenoid biosynthetic process	8.05E-03
95	GO:0009416: response to light stimulus	8.64E-03
96	GO:0055072: iron ion homeostasis	9.90E-03
97	GO:0071554: cell wall organization or biogenesis	1.04E-02
98	GO:0009567: double fertilization forming a zygote and endosperm	1.19E-02
99	GO:0009658: chloroplast organization	1.24E-02
100	GO:0015995: chlorophyll biosynthetic process	1.51E-02
101	GO:0009817: defense response to fungus, incompatible interaction	1.62E-02
102	GO:0009834: plant-type secondary cell wall biogenesis	1.74E-02
103	GO:0006499: N-terminal protein myristoylation	1.74E-02
104	GO:0045454: cell redox homeostasis	1.85E-02
105	GO:0006281: DNA repair	2.28E-02
106	GO:0009744: response to sucrose	2.30E-02
107	GO:0006855: drug transmembrane transport	2.57E-02
108	GO:0006364: rRNA processing	2.84E-02
109	GO:0006096: glycolytic process	3.20E-02
110	GO:0043086: negative regulation of catalytic activity	3.20E-02
111	GO:0006810: transport	3.41E-02
112	GO:0006396: RNA processing	3.73E-02
113	GO:0009790: embryo development	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
2	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
3	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
4	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
5	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
6	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
7	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
8	GO:0004823: leucine-tRNA ligase activity	0.00E+00
9	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
10	GO:0042586: peptide deformylase activity	1.04E-04
11	GO:0004832: valine-tRNA ligase activity	1.04E-04
12	GO:0016041: glutamate synthase (ferredoxin) activity	1.04E-04
13	GO:0008047: enzyme activator activity	1.37E-04
14	GO:0031072: heat shock protein binding	2.14E-04
15	GO:0052832: inositol monophosphate 3-phosphatase activity	2.44E-04
16	GO:0008934: inositol monophosphate 1-phosphatase activity	2.44E-04
17	GO:0052833: inositol monophosphate 4-phosphatase activity	2.44E-04
18	GO:0004826: phenylalanine-tRNA ligase activity	2.44E-04
19	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	2.44E-04
20	GO:0003844: 1,4-alpha-glucan branching enzyme activity	2.44E-04
21	GO:0019156: isoamylase activity	2.44E-04
22	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	2.44E-04
23	GO:0047746: chlorophyllase activity	2.44E-04
24	GO:0009977: proton motive force dependent protein transmembrane transporter activity	2.44E-04
25	GO:0031409: pigment binding	3.06E-04
26	GO:0005528: FK506 binding	3.40E-04
27	GO:0043169: cation binding	4.05E-04
28	GO:0003913: DNA photolyase activity	4.05E-04
29	GO:0002161: aminoacyl-tRNA editing activity	4.05E-04
30	GO:0004751: ribose-5-phosphate isomerase activity	4.05E-04
31	GO:0070402: NADPH binding	4.05E-04
32	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	4.05E-04
33	GO:0047134: protein-disulfide reductase activity	5.78E-04
34	GO:0004812: aminoacyl-tRNA ligase activity	5.78E-04
35	GO:0016149: translation release factor activity, codon specific	5.82E-04
36	GO:0004791: thioredoxin-disulfide reductase activity	7.18E-04
37	GO:0008453: alanine-glyoxylate transaminase activity	7.73E-04
38	GO:0004045: aminoacyl-tRNA hydrolase activity	7.73E-04
39	GO:0004659: prenyltransferase activity	7.73E-04
40	GO:0016279: protein-lysine N-methyltransferase activity	7.73E-04
41	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	7.73E-04
42	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	9.28E-04
43	GO:0051538: 3 iron, 4 sulfur cluster binding	9.77E-04
44	GO:0016787: hydrolase activity	1.19E-03
45	GO:0004556: alpha-amylase activity	1.19E-03
46	GO:2001070: starch binding	1.19E-03
47	GO:0016168: chlorophyll binding	1.23E-03
48	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.43E-03
49	GO:0004017: adenylate kinase activity	1.43E-03
50	GO:0009881: photoreceptor activity	1.67E-03
51	GO:0004033: aldo-keto reductase (NADP) activity	1.93E-03
52	GO:0003993: acid phosphatase activity	1.98E-03
53	GO:0003747: translation release factor activity	2.49E-03
54	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.84E-03
55	GO:0000049: tRNA binding	3.75E-03
56	GO:0004089: carbonate dehydratase activity	4.09E-03
57	GO:0003924: GTPase activity	4.18E-03
58	GO:0051082: unfolded protein binding	4.64E-03
59	GO:0015035: protein disulfide oxidoreductase activity	4.77E-03
60	GO:0004857: enzyme inhibitor activity	5.56E-03
61	GO:0033612: receptor serine/threonine kinase binding	6.35E-03
62	GO:0003756: protein disulfide isomerase activity	7.61E-03
63	GO:0003743: translation initiation factor activity	9.35E-03
64	GO:0016853: isomerase activity	9.42E-03
65	GO:0042802: identical protein binding	1.02E-02
66	GO:0048038: quinone binding	1.04E-02
67	GO:0000287: magnesium ion binding	1.22E-02
68	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.24E-02
69	GO:0016413: O-acetyltransferase activity	1.29E-02
70	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.62E-02
71	GO:0005525: GTP binding	1.63E-02
72	GO:0015238: drug transmembrane transporter activity	1.68E-02
73	GO:0030145: manganese ion binding	1.80E-02
74	GO:0003746: translation elongation factor activity	1.92E-02
75	GO:0050661: NADP binding	2.11E-02
76	GO:0043621: protein self-association	2.43E-02
77	GO:0005198: structural molecule activity	2.50E-02
78	GO:0051287: NAD binding	2.64E-02
79	GO:0046872: metal ion binding	2.76E-02
80	GO:0016298: lipase activity	2.91E-02
81	GO:0016491: oxidoreductase activity	2.98E-02
82	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.37E-02
83	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0043235: receptor complex	0.00E+00
2	GO:0010368: chloroplast isoamylase complex	0.00E+00
3	GO:0009507: chloroplast	1.48E-52
4	GO:0009570: chloroplast stroma	1.23E-26
5	GO:0009534: chloroplast thylakoid	1.13E-25
6	GO:0009535: chloroplast thylakoid membrane	4.34E-24
7	GO:0009941: chloroplast envelope	4.66E-12
8	GO:0009543: chloroplast thylakoid lumen	1.26E-10
9	GO:0009579: thylakoid	4.10E-08
10	GO:0031977: thylakoid lumen	3.52E-07
11	GO:0010287: plastoglobule	7.05E-05
12	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	9.49E-05
13	GO:0009515: granal stacked thylakoid	1.04E-04
14	GO:0031361: integral component of thylakoid membrane	1.04E-04
15	GO:0030095: chloroplast photosystem II	2.43E-04
16	GO:0000427: plastid-encoded plastid RNA polymerase complex	2.44E-04
17	GO:0009654: photosystem II oxygen evolving complex	3.76E-04
18	GO:0090575: RNA polymerase II transcription factor complex	4.05E-04
19	GO:0033281: TAT protein transport complex	4.05E-04
20	GO:0031969: chloroplast membrane	4.07E-04
21	GO:0009522: photosystem I	7.18E-04
22	GO:0019898: extrinsic component of membrane	7.69E-04
23	GO:0005759: mitochondrial matrix	1.00E-03
24	GO:0009501: amyloplast	1.93E-03
25	GO:0032040: small-subunit processome	3.75E-03
26	GO:0009508: plastid chromosome	4.09E-03
27	GO:0030076: light-harvesting complex	4.80E-03
28	GO:0005623: cell	5.95E-03
29	GO:0009523: photosystem II	9.90E-03
30	GO:0048046: apoplast	1.12E-02
31	GO:0009295: nucleoid	1.24E-02
32	GO:0030529: intracellular ribonucleoprotein complex	1.35E-02
33	GO:0009707: chloroplast outer membrane	1.62E-02
34	GO:0000325: plant-type vacuole	1.80E-02
35	GO:0009706: chloroplast inner membrane	3.66E-02
36	GO:0005777: peroxisome	4.62E-02