co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G19000

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045747: positive regulation of Notch signaling pathway	0.00E+00
2	GO:0010423: negative regulation of brassinosteroid biosynthetic process	0.00E+00
3	GO:0071000: response to magnetism	0.00E+00
4	GO:0046460: neutral lipid biosynthetic process	0.00E+00
5	GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine	0.00E+00
6	GO:0046294: formaldehyde catabolic process	0.00E+00
7	GO:0016093: polyprenol metabolic process	0.00E+00
8	GO:0032928: regulation of superoxide anion generation	0.00E+00
9	GO:0016576: histone dephosphorylation	0.00E+00
10	GO:0048856: anatomical structure development	0.00E+00
11	GO:0009946: proximal/distal axis specification	0.00E+00
12	GO:0045740: positive regulation of DNA replication	0.00E+00
13	GO:0010336: gibberellic acid homeostasis	0.00E+00
14	GO:0009583: detection of light stimulus	0.00E+00
15	GO:0010343: singlet oxygen-mediated programmed cell death	4.15E-06
16	GO:0010117: photoprotection	9.36E-05
17	GO:0071266: 'de novo' L-methionine biosynthetic process	3.02E-04
18	GO:1902265: abscisic acid homeostasis	3.02E-04
19	GO:0019346: transsulfuration	3.02E-04
20	GO:0034971: histone H3-R17 methylation	3.02E-04
21	GO:0072387: flavin adenine dinucleotide metabolic process	3.02E-04
22	GO:0048438: floral whorl development	3.02E-04
23	GO:0034970: histone H3-R2 methylation	3.02E-04
24	GO:0019343: cysteine biosynthetic process via cystathionine	3.02E-04
25	GO:0034972: histone H3-R26 methylation	3.02E-04
26	GO:0055114: oxidation-reduction process	3.14E-04
27	GO:0045036: protein targeting to chloroplast	6.23E-04
28	GO:0010617: circadian regulation of calcium ion oscillation	6.60E-04
29	GO:0007154: cell communication	6.60E-04
30	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	6.60E-04
31	GO:0099402: plant organ development	6.60E-04
32	GO:0019441: tryptophan catabolic process to kynurenine	6.60E-04
33	GO:0035335: peptidyl-tyrosine dephosphorylation	6.60E-04
34	GO:0016122: xanthophyll metabolic process	6.60E-04
35	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	6.60E-04
36	GO:1901529: positive regulation of anion channel activity	6.60E-04
37	GO:0009767: photosynthetic electron transport chain	9.29E-04
38	GO:0042276: error-prone translesion synthesis	1.07E-03
39	GO:1901672: positive regulation of systemic acquired resistance	1.07E-03
40	GO:0071492: cellular response to UV-A	1.07E-03
41	GO:0071836: nectar secretion	1.07E-03
42	GO:0045739: positive regulation of DNA repair	1.07E-03
43	GO:0006275: regulation of DNA replication	1.07E-03
44	GO:0010476: gibberellin mediated signaling pathway	1.07E-03
45	GO:0010325: raffinose family oligosaccharide biosynthetic process	1.07E-03
46	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	1.07E-03
47	GO:0010338: leaf formation	1.07E-03
48	GO:0031022: nuclear migration along microfilament	1.07E-03
49	GO:1902448: positive regulation of shade avoidance	1.07E-03
50	GO:0009399: nitrogen fixation	1.53E-03
51	GO:1901332: negative regulation of lateral root development	1.53E-03
52	GO:0006882: cellular zinc ion homeostasis	1.53E-03
53	GO:1902476: chloride transmembrane transport	1.53E-03
54	GO:0046653: tetrahydrofolate metabolic process	1.53E-03
55	GO:0009965: leaf morphogenesis	1.89E-03
56	GO:0006221: pyrimidine nucleotide biosynthetic process	2.06E-03
57	GO:0051567: histone H3-K9 methylation	2.06E-03
58	GO:0006749: glutathione metabolic process	2.06E-03
59	GO:1902347: response to strigolactone	2.06E-03
60	GO:0009902: chloroplast relocation	2.06E-03
61	GO:0034613: cellular protein localization	2.06E-03
62	GO:0006542: glutamine biosynthetic process	2.06E-03
63	GO:0071486: cellular response to high light intensity	2.06E-03
64	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	2.06E-03
65	GO:0009765: photosynthesis, light harvesting	2.06E-03
66	GO:0045088: regulation of innate immune response	2.06E-03
67	GO:0051603: proteolysis involved in cellular protein catabolic process	2.49E-03
68	GO:0016120: carotene biosynthetic process	2.63E-03
69	GO:0046283: anthocyanin-containing compound metabolic process	2.63E-03
70	GO:0007094: mitotic spindle assembly checkpoint	2.63E-03
71	GO:0010375: stomatal complex patterning	2.63E-03
72	GO:0000304: response to singlet oxygen	2.63E-03
73	GO:0006796: phosphate-containing compound metabolic process	3.24E-03
74	GO:1901371: regulation of leaf morphogenesis	3.24E-03
75	GO:0009117: nucleotide metabolic process	3.24E-03
76	GO:0000741: karyogamy	3.24E-03
77	GO:0016458: gene silencing	3.24E-03
78	GO:0010304: PSII associated light-harvesting complex II catabolic process	3.24E-03
79	GO:0016070: RNA metabolic process	3.24E-03
80	GO:0006555: methionine metabolic process	3.24E-03
81	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	3.24E-03
82	GO:0031053: primary miRNA processing	3.24E-03
83	GO:0060918: auxin transport	3.24E-03
84	GO:0045962: positive regulation of development, heterochronic	3.24E-03
85	GO:0048366: leaf development	3.68E-03
86	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.90E-03
87	GO:0010076: maintenance of floral meristem identity	3.90E-03
88	GO:0034389: lipid particle organization	3.90E-03
89	GO:0010016: shoot system morphogenesis	3.90E-03
90	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	3.90E-03
91	GO:0009903: chloroplast avoidance movement	3.90E-03
92	GO:0010019: chloroplast-nucleus signaling pathway	3.90E-03
93	GO:0048444: floral organ morphogenesis	3.90E-03
94	GO:0010310: regulation of hydrogen peroxide metabolic process	3.90E-03
95	GO:0019509: L-methionine salvage from methylthioadenosine	3.90E-03
96	GO:0030026: cellular manganese ion homeostasis	4.60E-03
97	GO:0009396: folic acid-containing compound biosynthetic process	4.60E-03
98	GO:0000082: G1/S transition of mitotic cell cycle	4.60E-03
99	GO:0051510: regulation of unidimensional cell growth	4.60E-03
100	GO:0050790: regulation of catalytic activity	4.60E-03
101	GO:0007050: cell cycle arrest	4.60E-03
102	GO:0006821: chloride transport	4.60E-03
103	GO:0009787: regulation of abscisic acid-activated signaling pathway	5.35E-03
104	GO:0009704: de-etiolation	5.35E-03
105	GO:0045292: mRNA cis splicing, via spliceosome	5.35E-03
106	GO:0010928: regulation of auxin mediated signaling pathway	5.35E-03
107	GO:0042128: nitrate assimilation	5.66E-03
108	GO:0010100: negative regulation of photomorphogenesis	6.13E-03
109	GO:0044030: regulation of DNA methylation	6.13E-03
110	GO:0010099: regulation of photomorphogenesis	6.13E-03
111	GO:0022900: electron transport chain	6.13E-03
112	GO:0019432: triglyceride biosynthetic process	6.95E-03
113	GO:0046916: cellular transition metal ion homeostasis	6.95E-03
114	GO:0009056: catabolic process	6.95E-03
115	GO:0015780: nucleotide-sugar transport	6.95E-03
116	GO:0098656: anion transmembrane transport	6.95E-03
117	GO:0009821: alkaloid biosynthetic process	6.95E-03
118	GO:0008356: asymmetric cell division	7.80E-03
119	GO:1900426: positive regulation of defense response to bacterium	7.80E-03
120	GO:0009638: phototropism	7.80E-03
121	GO:0035999: tetrahydrofolate interconversion	7.80E-03
122	GO:0009637: response to blue light	8.39E-03
123	GO:0009853: photorespiration	8.39E-03
124	GO:0009688: abscisic acid biosynthetic process	8.70E-03
125	GO:0055062: phosphate ion homeostasis	8.70E-03
126	GO:0043085: positive regulation of catalytic activity	9.63E-03
127	GO:0006816: calcium ion transport	9.63E-03
128	GO:0010582: floral meristem determinacy	1.06E-02
129	GO:0006810: transport	1.12E-02
130	GO:0030048: actin filament-based movement	1.16E-02
131	GO:0010102: lateral root morphogenesis	1.16E-02
132	GO:0009785: blue light signaling pathway	1.16E-02
133	GO:0050826: response to freezing	1.16E-02
134	GO:0010075: regulation of meristem growth	1.16E-02
135	GO:0005986: sucrose biosynthetic process	1.16E-02
136	GO:0009266: response to temperature stimulus	1.26E-02
137	GO:0006260: DNA replication	1.31E-02
138	GO:0009585: red, far-red light phototransduction	1.46E-02
139	GO:0006071: glycerol metabolic process	1.48E-02
140	GO:0000162: tryptophan biosynthetic process	1.48E-02
141	GO:2000377: regulation of reactive oxygen species metabolic process	1.59E-02
142	GO:0006487: protein N-linked glycosylation	1.59E-02
143	GO:0009944: polarity specification of adaxial/abaxial axis	1.59E-02
144	GO:0007017: microtubule-based process	1.71E-02
145	GO:0048367: shoot system development	1.79E-02
146	GO:0019915: lipid storage	1.82E-02
147	GO:0006306: DNA methylation	1.82E-02
148	GO:0046777: protein autophosphorylation	1.87E-02
149	GO:0006730: one-carbon metabolic process	1.95E-02
150	GO:0016226: iron-sulfur cluster assembly	1.95E-02
151	GO:0009693: ethylene biosynthetic process	2.07E-02
152	GO:0006012: galactose metabolic process	2.07E-02
153	GO:0016117: carotenoid biosynthetic process	2.33E-02
154	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.33E-02
155	GO:0010051: xylem and phloem pattern formation	2.46E-02
156	GO:0010087: phloem or xylem histogenesis	2.46E-02
157	GO:0010118: stomatal movement	2.46E-02
158	GO:0006520: cellular amino acid metabolic process	2.59E-02
159	GO:0010197: polar nucleus fusion	2.59E-02
160	GO:0009958: positive gravitropism	2.59E-02
161	GO:0032259: methylation	2.66E-02
162	GO:0042752: regulation of circadian rhythm	2.73E-02
163	GO:0009646: response to absence of light	2.73E-02
164	GO:0009058: biosynthetic process	2.76E-02
165	GO:0009851: auxin biosynthetic process	2.87E-02
166	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.01E-02
167	GO:0007264: small GTPase mediated signal transduction	3.16E-02
168	GO:1901657: glycosyl compound metabolic process	3.31E-02
169	GO:0005975: carbohydrate metabolic process	3.32E-02
170	GO:0007623: circadian rhythm	3.61E-02
171	GO:0016579: protein deubiquitination	3.76E-02
172	GO:0009615: response to virus	3.92E-02
173	GO:0016126: sterol biosynthetic process	3.92E-02
174	GO:0009739: response to gibberellin	4.03E-02
175	GO:0010029: regulation of seed germination	4.07E-02
176	GO:0006470: protein dephosphorylation	4.12E-02
177	GO:0006974: cellular response to DNA damage stimulus	4.24E-02
178	GO:0015995: chlorophyll biosynthetic process	4.40E-02
179	GO:0010411: xyloglucan metabolic process	4.40E-02
180	GO:0048573: photoperiodism, flowering	4.40E-02
181	GO:0006950: response to stress	4.40E-02
182	GO:0006508: proteolysis	4.45E-02
183	GO:0018298: protein-chromophore linkage	4.73E-02
184	GO:0010311: lateral root formation	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
2	GO:0008170: N-methyltransferase activity	0.00E+00
3	GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity	0.00E+00
4	GO:0009008: DNA-methyltransferase activity	0.00E+00
5	GO:0045436: lycopene beta cyclase activity	0.00E+00
6	GO:0030946: protein tyrosine phosphatase activity, metal-dependent	0.00E+00
7	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
8	GO:0004848: ureidoglycolate hydrolase activity	1.48E-05
9	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	3.30E-05
10	GO:0016783: sulfurtransferase activity	3.02E-04
11	GO:0004121: cystathionine beta-lyase activity	3.02E-04
12	GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity	3.02E-04
13	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	3.02E-04
14	GO:0004123: cystathionine gamma-lyase activity	3.02E-04
15	GO:0046480: galactolipid galactosyltransferase activity	3.02E-04
16	GO:0046906: tetrapyrrole binding	3.02E-04
17	GO:0080079: cellobiose glucosidase activity	3.02E-04
18	GO:0033984: indole-3-glycerol-phosphate lyase activity	3.02E-04
19	GO:0015085: calcium ion transmembrane transporter activity	3.02E-04
20	GO:0030337: DNA polymerase processivity factor activity	3.02E-04
21	GO:0071949: FAD binding	4.52E-04
22	GO:0004061: arylformamidase activity	6.60E-04
23	GO:0004046: aminoacylase activity	6.60E-04
24	GO:0035241: protein-arginine omega-N monomethyltransferase activity	6.60E-04
25	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	6.60E-04
26	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	6.60E-04
27	GO:0010331: gibberellin binding	6.60E-04
28	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	6.60E-04
29	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	6.60E-04
30	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	6.60E-04
31	GO:0003962: cystathionine gamma-synthase activity	1.07E-03
32	GO:0019003: GDP binding	1.07E-03
33	GO:0000900: translation repressor activity, nucleic acid binding	1.07E-03
34	GO:0017176: phosphatidylinositol N-acetylglucosaminyltransferase activity	1.07E-03
35	GO:0008469: histone-arginine N-methyltransferase activity	1.07E-03
36	GO:0004180: carboxypeptidase activity	1.07E-03
37	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	1.07E-03
38	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.07E-03
39	GO:0046524: sucrose-phosphate synthase activity	1.07E-03
40	GO:0004792: thiosulfate sulfurtransferase activity	1.53E-03
41	GO:0000339: RNA cap binding	1.53E-03
42	GO:0009882: blue light photoreceptor activity	1.53E-03
43	GO:0000254: C-4 methylsterol oxidase activity	1.53E-03
44	GO:0035529: NADH pyrophosphatase activity	1.53E-03
45	GO:0004176: ATP-dependent peptidase activity	1.74E-03
46	GO:0005253: anion channel activity	2.06E-03
47	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	2.06E-03
48	GO:0015368: calcium:cation antiporter activity	2.06E-03
49	GO:0004834: tryptophan synthase activity	2.06E-03
50	GO:0015369: calcium:proton antiporter activity	2.06E-03
51	GO:0004356: glutamate-ammonia ligase activity	2.63E-03
52	GO:0008168: methyltransferase activity	2.71E-03
53	GO:0008080: N-acetyltransferase activity	2.84E-03
54	GO:0016491: oxidoreductase activity	2.98E-03
55	GO:0016787: hydrolase activity	3.04E-03
56	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	3.24E-03
57	GO:0000293: ferric-chelate reductase activity	3.24E-03
58	GO:0005247: voltage-gated chloride channel activity	3.24E-03
59	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	3.24E-03
60	GO:0022857: transmembrane transporter activity	3.46E-03
61	GO:0048038: quinone binding	3.50E-03
62	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	3.90E-03
63	GO:0004144: diacylglycerol O-acyltransferase activity	3.90E-03
64	GO:0016157: sucrose synthase activity	3.90E-03
65	GO:0008237: metallopeptidase activity	4.51E-03
66	GO:0019899: enzyme binding	4.60E-03
67	GO:0008143: poly(A) binding	4.60E-03
68	GO:0005338: nucleotide-sugar transmembrane transporter activity	4.60E-03
69	GO:0004427: inorganic diphosphatase activity	4.60E-03
70	GO:0016621: cinnamoyl-CoA reductase activity	4.60E-03
71	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	5.14E-03
72	GO:0004525: ribonuclease III activity	5.35E-03
73	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	5.35E-03
74	GO:0004034: aldose 1-epimerase activity	5.35E-03
75	GO:0046914: transition metal ion binding	6.13E-03
76	GO:0003824: catalytic activity	6.33E-03
77	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	6.95E-03
78	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	6.95E-03
79	GO:0004222: metalloendopeptidase activity	7.29E-03
80	GO:0016844: strictosidine synthase activity	7.80E-03
81	GO:0001055: RNA polymerase II activity	7.80E-03
82	GO:0008047: enzyme activator activity	8.70E-03
83	GO:0004860: protein kinase inhibitor activity	9.63E-03
84	GO:0004129: cytochrome-c oxidase activity	9.63E-03
85	GO:0001054: RNA polymerase I activity	9.63E-03
86	GO:0008378: galactosyltransferase activity	1.06E-02
87	GO:0001056: RNA polymerase III activity	1.06E-02
88	GO:0004185: serine-type carboxypeptidase activity	1.08E-02
89	GO:0005315: inorganic phosphate transmembrane transporter activity	1.16E-02
90	GO:0031072: heat shock protein binding	1.16E-02
91	GO:0051537: 2 iron, 2 sulfur cluster binding	1.17E-02
92	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.26E-02
93	GO:0003887: DNA-directed DNA polymerase activity	1.48E-02
94	GO:0008514: organic anion transmembrane transporter activity	2.20E-02
95	GO:0042803: protein homodimerization activity	2.29E-02
96	GO:0050662: coenzyme binding	2.73E-02
97	GO:0016853: isomerase activity	2.73E-02
98	GO:0030170: pyridoxal phosphate binding	2.90E-02
99	GO:0004843: thiol-dependent ubiquitin-specific protease activity	3.01E-02
100	GO:0004518: nuclease activity	3.16E-02
101	GO:0004197: cysteine-type endopeptidase activity	3.16E-02
102	GO:0008483: transaminase activity	3.61E-02
103	GO:0016413: O-acetyltransferase activity	3.76E-02
104	GO:0016168: chlorophyll binding	4.07E-02
105	GO:0004806: triglyceride lipase activity	4.40E-02
106	GO:0030247: polysaccharide binding	4.40E-02
107	GO:0008236: serine-type peptidase activity	4.56E-02
108	GO:0005506: iron ion binding	4.71E-02
109	GO:0005096: GTPase activator activity	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0097708: intracellular vesicle	0.00E+00
2	GO:0030427: site of polarized growth	0.00E+00
3	GO:0009507: chloroplast	2.17E-06
4	GO:0005845: mRNA cap binding complex	3.02E-04
5	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.52E-04
6	GO:0005846: nuclear cap binding complex	6.60E-04
7	GO:0016605: PML body	1.07E-03
8	GO:0009517: PSII associated light-harvesting complex II	2.06E-03
9	GO:0030286: dynein complex	2.06E-03
10	GO:0005747: mitochondrial respiratory chain complex I	3.07E-03
11	GO:0030140: trans-Golgi network transport vesicle	3.24E-03
12	GO:0034707: chloride channel complex	3.24E-03
13	GO:0000793: condensed chromosome	3.24E-03
14	GO:0031463: Cul3-RING ubiquitin ligase complex	3.24E-03
15	GO:0009535: chloroplast thylakoid membrane	3.38E-03
16	GO:0031969: chloroplast membrane	3.98E-03
17	GO:0005773: vacuole	4.39E-03
18	GO:0031359: integral component of chloroplast outer membrane	4.60E-03
19	GO:0005811: lipid particle	6.13E-03
20	GO:0031090: organelle membrane	6.95E-03
21	GO:0016604: nuclear body	7.80E-03
22	GO:0005764: lysosome	1.26E-02
23	GO:0031966: mitochondrial membrane	1.36E-02
24	GO:0000419: DNA-directed RNA polymerase V complex	1.48E-02
25	GO:0005875: microtubule associated complex	1.48E-02
26	GO:0042651: thylakoid membrane	1.71E-02
27	GO:0045271: respiratory chain complex I	1.71E-02
28	GO:0015935: small ribosomal subunit	1.82E-02
29	GO:0009536: plastid	2.33E-02
30	GO:0016021: integral component of membrane	2.36E-02
31	GO:0005654: nucleoplasm	2.55E-02
32	GO:0005623: cell	2.69E-02
33	GO:0009523: photosystem II	2.87E-02
34	GO:0005622: intracellular	3.99E-02
35	GO:0005615: extracellular space	4.03E-02
36	GO:0009941: chloroplast envelope	4.32E-02
37	GO:0005783: endoplasmic reticulum	4.47E-02
38	GO:0019005: SCF ubiquitin ligase complex	4.73E-02
39	GO:0009707: chloroplast outer membrane	4.73E-02
40	GO:0005737: cytoplasm	4.94E-02