co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G18360

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
2	GO:0002184: cytoplasmic translational termination	0.00E+00
3	GO:0030155: regulation of cell adhesion	0.00E+00
4	GO:0000025: maltose catabolic process	0.00E+00
5	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
6	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
7	GO:0090627: plant epidermal cell differentiation	0.00E+00
8	GO:0090279: regulation of calcium ion import	0.00E+00
9	GO:1905177: tracheary element differentiation	0.00E+00
10	GO:0071474: cellular hyperosmotic response	0.00E+00
11	GO:0015979: photosynthesis	2.69E-08
12	GO:0005983: starch catabolic process	1.04E-06
13	GO:0030388: fructose 1,6-bisphosphate metabolic process	4.15E-06
14	GO:0015995: chlorophyll biosynthetic process	4.52E-06
15	GO:0009735: response to cytokinin	7.63E-06
16	GO:0032544: plastid translation	1.16E-05
17	GO:0042254: ribosome biogenesis	1.38E-05
18	GO:0006000: fructose metabolic process	1.48E-05
19	GO:0005982: starch metabolic process	2.15E-05
20	GO:0009773: photosynthetic electron transport in photosystem I	3.59E-05
21	GO:0006412: translation	7.48E-05
22	GO:0009409: response to cold	7.84E-05
23	GO:0010190: cytochrome b6f complex assembly	1.36E-04
24	GO:0043007: maintenance of rDNA	3.02E-04
25	GO:0010028: xanthophyll cycle	3.02E-04
26	GO:0000023: maltose metabolic process	3.02E-04
27	GO:0006431: methionyl-tRNA aminoacylation	3.02E-04
28	GO:0005980: glycogen catabolic process	3.02E-04
29	GO:0006002: fructose 6-phosphate metabolic process	3.75E-04
30	GO:0010206: photosystem II repair	4.52E-04
31	GO:0010027: thylakoid membrane organization	6.32E-04
32	GO:0031648: protein destabilization	6.60E-04
33	GO:0016122: xanthophyll metabolic process	6.60E-04
34	GO:0006521: regulation of cellular amino acid metabolic process	6.60E-04
35	GO:0051262: protein tetramerization	6.60E-04
36	GO:0005976: polysaccharide metabolic process	6.60E-04
37	GO:0090342: regulation of cell aging	6.60E-04
38	GO:0009817: defense response to fungus, incompatible interaction	8.83E-04
39	GO:0006094: gluconeogenesis	9.29E-04
40	GO:0005986: sucrose biosynthetic process	9.29E-04
41	GO:0010102: lateral root morphogenesis	9.29E-04
42	GO:0016050: vesicle organization	1.07E-03
43	GO:0048281: inflorescence morphogenesis	1.07E-03
44	GO:0006518: peptide metabolic process	1.07E-03
45	GO:0010623: programmed cell death involved in cell development	1.07E-03
46	GO:0006289: nucleotide-excision repair	1.44E-03
47	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.53E-03
48	GO:0010148: transpiration	1.53E-03
49	GO:0010731: protein glutathionylation	1.53E-03
50	GO:0006424: glutamyl-tRNA aminoacylation	1.53E-03
51	GO:0006418: tRNA aminoacylation for protein translation	1.58E-03
52	GO:0061077: chaperone-mediated protein folding	1.74E-03
53	GO:0006808: regulation of nitrogen utilization	2.06E-03
54	GO:0015976: carbon utilization	2.06E-03
55	GO:0051322: anaphase	2.06E-03
56	GO:0019464: glycine decarboxylation via glycine cleavage system	2.06E-03
57	GO:0006109: regulation of carbohydrate metabolic process	2.06E-03
58	GO:0015994: chlorophyll metabolic process	2.06E-03
59	GO:0010600: regulation of auxin biosynthetic process	2.06E-03
60	GO:2000122: negative regulation of stomatal complex development	2.06E-03
61	GO:0010508: positive regulation of autophagy	2.06E-03
62	GO:0015846: polyamine transport	2.06E-03
63	GO:0051205: protein insertion into membrane	2.06E-03
64	GO:0006546: glycine catabolic process	2.06E-03
65	GO:0010021: amylopectin biosynthetic process	2.06E-03
66	GO:0010037: response to carbon dioxide	2.06E-03
67	GO:0008152: metabolic process	2.09E-03
68	GO:0006284: base-excision repair	2.25E-03
69	GO:0006461: protein complex assembly	2.63E-03
70	GO:0000304: response to singlet oxygen	2.63E-03
71	GO:0032543: mitochondrial translation	2.63E-03
72	GO:0045038: protein import into chloroplast thylakoid membrane	2.63E-03
73	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.24E-03
74	GO:0000470: maturation of LSU-rRNA	3.24E-03
75	GO:0009913: epidermal cell differentiation	3.24E-03
76	GO:0019252: starch biosynthetic process	3.27E-03
77	GO:0009955: adaxial/abaxial pattern specification	3.90E-03
78	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.90E-03
79	GO:0042026: protein refolding	3.90E-03
80	GO:1901259: chloroplast rRNA processing	3.90E-03
81	GO:0006458: 'de novo' protein folding	3.90E-03
82	GO:0030488: tRNA methylation	3.90E-03
83	GO:0030163: protein catabolic process	3.99E-03
84	GO:0010103: stomatal complex morphogenesis	4.60E-03
85	GO:0010161: red light signaling pathway	4.60E-03
86	GO:0070370: cellular heat acclimation	4.60E-03
87	GO:0010928: regulation of auxin mediated signaling pathway	5.35E-03
88	GO:0008610: lipid biosynthetic process	5.35E-03
89	GO:0005978: glycogen biosynthetic process	5.35E-03
90	GO:0030091: protein repair	5.35E-03
91	GO:0006353: DNA-templated transcription, termination	5.35E-03
92	GO:0009704: de-etiolation	5.35E-03
93	GO:0055114: oxidation-reduction process	5.44E-03
94	GO:0017004: cytochrome complex assembly	6.13E-03
95	GO:0009657: plastid organization	6.13E-03
96	GO:0001558: regulation of cell growth	6.13E-03
97	GO:0051865: protein autoubiquitination	6.95E-03
98	GO:0006783: heme biosynthetic process	6.95E-03
99	GO:0009631: cold acclimation	7.65E-03
100	GO:0042761: very long-chain fatty acid biosynthetic process	7.80E-03
101	GO:0048829: root cap development	8.70E-03
102	GO:0006782: protoporphyrinogen IX biosynthetic process	8.70E-03
103	GO:0043069: negative regulation of programmed cell death	8.70E-03
104	GO:0034599: cellular response to oxidative stress	8.77E-03
105	GO:0019684: photosynthesis, light reaction	9.63E-03
106	GO:0009089: lysine biosynthetic process via diaminopimelate	9.63E-03
107	GO:0006415: translational termination	9.63E-03
108	GO:0009073: aromatic amino acid family biosynthetic process	9.63E-03
109	GO:0043085: positive regulation of catalytic activity	9.63E-03
110	GO:0009750: response to fructose	9.63E-03
111	GO:0006631: fatty acid metabolic process	9.98E-03
112	GO:0010628: positive regulation of gene expression	1.16E-02
113	GO:0006006: glucose metabolic process	1.16E-02
114	GO:0005975: carbohydrate metabolic process	1.19E-02
115	GO:0009266: response to temperature stimulus	1.26E-02
116	GO:0010020: chloroplast fission	1.26E-02
117	GO:0019253: reductive pentose-phosphate cycle	1.26E-02
118	GO:0009658: chloroplast organization	1.31E-02
119	GO:0005985: sucrose metabolic process	1.37E-02
120	GO:0010025: wax biosynthetic process	1.48E-02
121	GO:0000027: ribosomal large subunit assembly	1.59E-02
122	GO:0009944: polarity specification of adaxial/abaxial axis	1.59E-02
123	GO:0051017: actin filament bundle assembly	1.59E-02
124	GO:0042742: defense response to bacterium	1.65E-02
125	GO:0051302: regulation of cell division	1.71E-02
126	GO:0007017: microtubule-based process	1.71E-02
127	GO:0019915: lipid storage	1.82E-02
128	GO:0031408: oxylipin biosynthetic process	1.82E-02
129	GO:0003333: amino acid transmembrane transport	1.82E-02
130	GO:0010017: red or far-red light signaling pathway	1.95E-02
131	GO:0035428: hexose transmembrane transport	1.95E-02
132	GO:0016226: iron-sulfur cluster assembly	1.95E-02
133	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.95E-02
134	GO:0009686: gibberellin biosynthetic process	2.07E-02
135	GO:0001944: vasculature development	2.07E-02
136	GO:0045454: cell redox homeostasis	2.16E-02
137	GO:0010089: xylem development	2.20E-02
138	GO:0046323: glucose import	2.59E-02
139	GO:0006662: glycerol ether metabolic process	2.59E-02
140	GO:0006281: DNA repair	2.80E-02
141	GO:0048825: cotyledon development	2.87E-02
142	GO:0000302: response to reactive oxygen species	3.01E-02
143	GO:1901657: glycosyl compound metabolic process	3.31E-02
144	GO:0007623: circadian rhythm	3.61E-02
145	GO:0000910: cytokinesis	3.76E-02
146	GO:0016126: sterol biosynthetic process	3.92E-02
147	GO:0009627: systemic acquired resistance	4.24E-02
148	GO:0006508: proteolysis	4.45E-02
149	GO:0016311: dephosphorylation	4.56E-02
150	GO:0009414: response to water deprivation	4.65E-02
151	GO:0048481: plant ovule development	4.73E-02
152	GO:0006979: response to oxidative stress	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0009899: ent-kaurene synthase activity	0.00E+00
2	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
3	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
4	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
5	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
6	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
7	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
8	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
9	GO:0004134: 4-alpha-glucanotransferase activity	0.00E+00
10	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
11	GO:0019843: rRNA binding	2.67E-09
12	GO:0005528: FK506 binding	8.23E-08
13	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.15E-06
14	GO:0003735: structural constituent of ribosome	1.64E-05
15	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.93E-05
16	GO:0016851: magnesium chelatase activity	3.30E-05
17	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	3.02E-04
18	GO:0005227: calcium activated cation channel activity	3.02E-04
19	GO:0008184: glycogen phosphorylase activity	3.02E-04
20	GO:0080132: fatty acid alpha-hydroxylase activity	3.02E-04
21	GO:0004856: xylulokinase activity	3.02E-04
22	GO:0004853: uroporphyrinogen decarboxylase activity	3.02E-04
23	GO:0004645: phosphorylase activity	3.02E-04
24	GO:0019203: carbohydrate phosphatase activity	3.02E-04
25	GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity	3.02E-04
26	GO:0004825: methionine-tRNA ligase activity	3.02E-04
27	GO:0016868: intramolecular transferase activity, phosphotransferases	6.60E-04
28	GO:0010297: heteropolysaccharide binding	6.60E-04
29	GO:0033201: alpha-1,4-glucan synthase activity	6.60E-04
30	GO:0018708: thiol S-methyltransferase activity	6.60E-04
31	GO:0003844: 1,4-alpha-glucan branching enzyme activity	6.60E-04
32	GO:0008967: phosphoglycolate phosphatase activity	6.60E-04
33	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	6.60E-04
34	GO:0044183: protein binding involved in protein folding	7.19E-04
35	GO:0004565: beta-galactosidase activity	9.29E-04
36	GO:0004324: ferredoxin-NADP+ reductase activity	1.07E-03
37	GO:0043169: cation binding	1.07E-03
38	GO:0004373: glycogen (starch) synthase activity	1.07E-03
39	GO:0017150: tRNA dihydrouridine synthase activity	1.07E-03
40	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.07E-03
41	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.53E-03
42	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.53E-03
43	GO:0015203: polyamine transmembrane transporter activity	1.53E-03
44	GO:0016149: translation release factor activity, codon specific	1.53E-03
45	GO:0043023: ribosomal large subunit binding	1.53E-03
46	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.06E-03
47	GO:0019104: DNA N-glycosylase activity	2.06E-03
48	GO:0004506: squalene monooxygenase activity	2.06E-03
49	GO:0019199: transmembrane receptor protein kinase activity	2.06E-03
50	GO:0009011: starch synthase activity	2.06E-03
51	GO:0042277: peptide binding	2.06E-03
52	GO:0004812: aminoacyl-tRNA ligase activity	2.44E-03
53	GO:0008725: DNA-3-methyladenine glycosylase activity	2.63E-03
54	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.63E-03
55	GO:0003959: NADPH dehydrogenase activity	2.63E-03
56	GO:0004040: amidase activity	2.63E-03
57	GO:0016491: oxidoreductase activity	2.98E-03
58	GO:2001070: starch binding	3.24E-03
59	GO:0004130: cytochrome-c peroxidase activity	3.24E-03
60	GO:0048038: quinone binding	3.50E-03
61	GO:0051920: peroxiredoxin activity	3.90E-03
62	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.90E-03
63	GO:0005261: cation channel activity	3.90E-03
64	GO:0004620: phospholipase activity	4.60E-03
65	GO:0005337: nucleoside transmembrane transporter activity	5.35E-03
66	GO:0016209: antioxidant activity	5.35E-03
67	GO:0004033: aldo-keto reductase (NADP) activity	5.35E-03
68	GO:0004252: serine-type endopeptidase activity	5.68E-03
69	GO:0008173: RNA methyltransferase activity	6.13E-03
70	GO:0008236: serine-type peptidase activity	6.28E-03
71	GO:0003747: translation release factor activity	6.95E-03
72	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	6.95E-03
73	GO:0004222: metalloendopeptidase activity	7.29E-03
74	GO:0015174: basic amino acid transmembrane transporter activity	7.80E-03
75	GO:0008047: enzyme activator activity	8.70E-03
76	GO:0015386: potassium:proton antiporter activity	9.63E-03
77	GO:0004089: carbonate dehydratase activity	1.16E-02
78	GO:0043621: protein self-association	1.17E-02
79	GO:0008266: poly(U) RNA binding	1.26E-02
80	GO:0004190: aspartic-type endopeptidase activity	1.37E-02
81	GO:0051536: iron-sulfur cluster binding	1.59E-02
82	GO:0004857: enzyme inhibitor activity	1.59E-02
83	GO:0015079: potassium ion transmembrane transporter activity	1.71E-02
84	GO:0022891: substrate-specific transmembrane transporter activity	2.07E-02
85	GO:0030570: pectate lyase activity	2.07E-02
86	GO:0047134: protein-disulfide reductase activity	2.33E-02
87	GO:0004791: thioredoxin-disulfide reductase activity	2.73E-02
88	GO:0005355: glucose transmembrane transporter activity	2.73E-02
89	GO:0003924: GTPase activity	2.80E-02
90	GO:0051015: actin filament binding	3.31E-02
91	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.31E-02
92	GO:0003684: damaged DNA binding	3.46E-02
93	GO:0008237: metallopeptidase activity	3.61E-02
94	GO:0005200: structural constituent of cytoskeleton	3.61E-02
95	GO:0016597: amino acid binding	3.76E-02
96	GO:0102483: scopolin beta-glucosidase activity	4.40E-02
97	GO:0030247: polysaccharide binding	4.40E-02
98	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
3	GO:0044391: ribosomal subunit	0.00E+00
4	GO:0009507: chloroplast	1.38E-48
5	GO:0009570: chloroplast stroma	9.79E-37
6	GO:0009534: chloroplast thylakoid	2.47E-31
7	GO:0009535: chloroplast thylakoid membrane	2.47E-24
8	GO:0009941: chloroplast envelope	7.01E-21
9	GO:0009543: chloroplast thylakoid lumen	4.08E-15
10	GO:0009579: thylakoid	8.67E-14
11	GO:0031977: thylakoid lumen	2.97E-11
12	GO:0005840: ribosome	7.00E-07
13	GO:0009501: amyloplast	8.02E-06
14	GO:0010007: magnesium chelatase complex	1.48E-05
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.60E-05
16	GO:0010319: stromule	4.68E-05
17	GO:0030095: chloroplast photosystem II	6.71E-05
18	GO:0009533: chloroplast stromal thylakoid	2.42E-04
19	GO:0009538: photosystem I reaction center	3.05E-04
20	GO:0009295: nucleoid	5.46E-04
21	GO:0010287: plastoglobule	8.38E-04
22	GO:0009508: plastid chromosome	9.29E-04
23	GO:0005960: glycine cleavage complex	1.53E-03
24	GO:0009536: plastid	2.55E-03
25	GO:0055035: plastid thylakoid membrane	2.63E-03
26	GO:0048046: apoplast	4.10E-03
27	GO:0005763: mitochondrial small ribosomal subunit	6.95E-03
28	GO:0042644: chloroplast nucleoid	6.95E-03
29	GO:0045298: tubulin complex	6.95E-03
30	GO:0009574: preprophase band	1.16E-02
31	GO:0016020: membrane	1.27E-02
32	GO:0043234: protein complex	1.48E-02
33	GO:0009654: photosystem II oxygen evolving complex	1.71E-02
34	GO:0042651: thylakoid membrane	1.71E-02
35	GO:0031969: chloroplast membrane	1.72E-02
36	GO:0015935: small ribosomal subunit	1.82E-02
37	GO:0015629: actin cytoskeleton	2.07E-02
38	GO:0009706: chloroplast inner membrane	2.09E-02
39	GO:0009523: photosystem II	2.87E-02
40	GO:0019898: extrinsic component of membrane	2.87E-02