co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G18170

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0008298: intracellular mRNA localization	0.00E+00
2	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
3	GO:0042371: vitamin K biosynthetic process	0.00E+00
4	GO:0006399: tRNA metabolic process	0.00E+00
5	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
6	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
7	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
8	GO:0042821: pyridoxal biosynthetic process	0.00E+00
9	GO:0042820: vitamin B6 catabolic process	0.00E+00
10	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
11	GO:0006114: glycerol biosynthetic process	0.00E+00
12	GO:1901965: endoplasmic reticulum to chloroplast transport	0.00E+00
13	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
14	GO:0015979: photosynthesis	1.21E-06
15	GO:1902326: positive regulation of chlorophyll biosynthetic process	6.00E-06
16	GO:0034755: iron ion transmembrane transport	6.00E-06
17	GO:0018298: protein-chromophore linkage	1.19E-05
18	GO:0009765: photosynthesis, light harvesting	8.19E-05
19	GO:0006021: inositol biosynthetic process	8.19E-05
20	GO:0010207: photosystem II assembly	1.02E-04
21	GO:0046855: inositol phosphate dephosphorylation	1.84E-04
22	GO:0000481: maturation of 5S rRNA	3.65E-04
23	GO:0006474: N-terminal protein amino acid acetylation	3.65E-04
24	GO:0017198: N-terminal peptidyl-serine acetylation	3.65E-04
25	GO:0006436: tryptophanyl-tRNA aminoacylation	3.65E-04
26	GO:0034337: RNA folding	3.65E-04
27	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	3.65E-04
28	GO:0006419: alanyl-tRNA aminoacylation	3.65E-04
29	GO:0000476: maturation of 4.5S rRNA	3.65E-04
30	GO:0009443: pyridoxal 5'-phosphate salvage	3.65E-04
31	GO:0018002: N-terminal peptidyl-glutamic acid acetylation	3.65E-04
32	GO:0000967: rRNA 5'-end processing	3.65E-04
33	GO:0033388: putrescine biosynthetic process from arginine	3.65E-04
34	GO:0006824: cobalt ion transport	3.65E-04
35	GO:0006475: internal protein amino acid acetylation	3.65E-04
36	GO:1990052: ER to chloroplast lipid transport	3.65E-04
37	GO:0048564: photosystem I assembly	4.05E-04
38	GO:0009657: plastid organization	4.96E-04
39	GO:0009446: putrescine biosynthetic process	7.94E-04
40	GO:0006568: tryptophan metabolic process	7.94E-04
41	GO:0034470: ncRNA processing	7.94E-04
42	GO:0010275: NAD(P)H dehydrogenase complex assembly	7.94E-04
43	GO:0080005: photosystem stoichiometry adjustment	7.94E-04
44	GO:0006435: threonyl-tRNA aminoacylation	7.94E-04
45	GO:0030187: melatonin biosynthetic process	7.94E-04
46	GO:0071457: cellular response to ozone	7.94E-04
47	GO:0006432: phenylalanyl-tRNA aminoacylation	7.94E-04
48	GO:0000256: allantoin catabolic process	7.94E-04
49	GO:0009793: embryo development ending in seed dormancy	9.90E-04
50	GO:0006790: sulfur compound metabolic process	1.07E-03
51	GO:0005977: glycogen metabolic process	1.29E-03
52	GO:0009405: pathogenesis	1.29E-03
53	GO:0006954: inflammatory response	1.29E-03
54	GO:0090391: granum assembly	1.29E-03
55	GO:0006013: mannose metabolic process	1.29E-03
56	GO:0010136: ureide catabolic process	1.29E-03
57	GO:0051604: protein maturation	1.29E-03
58	GO:0046854: phosphatidylinositol phosphorylation	1.53E-03
59	GO:0019853: L-ascorbic acid biosynthetic process	1.53E-03
60	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.85E-03
61	GO:2001141: regulation of RNA biosynthetic process	1.85E-03
62	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.85E-03
63	GO:0006020: inositol metabolic process	1.85E-03
64	GO:0071484: cellular response to light intensity	1.85E-03
65	GO:0009102: biotin biosynthetic process	1.85E-03
66	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.85E-03
67	GO:0006145: purine nucleobase catabolic process	1.85E-03
68	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.85E-03
69	GO:0051016: barbed-end actin filament capping	1.85E-03
70	GO:0046739: transport of virus in multicellular host	1.85E-03
71	GO:0009768: photosynthesis, light harvesting in photosystem I	2.09E-03
72	GO:0010114: response to red light	2.34E-03
73	GO:0010021: amylopectin biosynthetic process	2.49E-03
74	GO:0071486: cellular response to high light intensity	2.49E-03
75	GO:0016123: xanthophyll biosynthetic process	3.18E-03
76	GO:0071493: cellular response to UV-B	3.18E-03
77	GO:0016558: protein import into peroxisome matrix	3.18E-03
78	GO:0016120: carotene biosynthetic process	3.18E-03
79	GO:0006564: L-serine biosynthetic process	3.18E-03
80	GO:0010236: plastoquinone biosynthetic process	3.18E-03
81	GO:0006364: rRNA processing	3.42E-03
82	GO:0042549: photosystem II stabilization	3.93E-03
83	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.93E-03
84	GO:0006655: phosphatidylglycerol biosynthetic process	3.93E-03
85	GO:0010190: cytochrome b6f complex assembly	3.93E-03
86	GO:0009117: nucleotide metabolic process	3.93E-03
87	GO:0009643: photosynthetic acclimation	3.93E-03
88	GO:0009658: chloroplast organization	4.43E-03
89	GO:0042254: ribosome biogenesis	4.56E-03
90	GO:0010189: vitamin E biosynthetic process	4.74E-03
91	GO:0042372: phylloquinone biosynthetic process	4.74E-03
92	GO:1901259: chloroplast rRNA processing	4.74E-03
93	GO:0048280: vesicle fusion with Golgi apparatus	4.74E-03
94	GO:0009772: photosynthetic electron transport in photosystem II	5.60E-03
95	GO:0009645: response to low light intensity stimulus	5.60E-03
96	GO:0006400: tRNA modification	5.60E-03
97	GO:0080167: response to karrikin	6.14E-03
98	GO:0009231: riboflavin biosynthetic process	6.51E-03
99	GO:0016559: peroxisome fission	6.51E-03
100	GO:0009642: response to light intensity	6.51E-03
101	GO:0042255: ribosome assembly	6.51E-03
102	GO:0006353: DNA-templated transcription, termination	6.51E-03
103	GO:0006605: protein targeting	6.51E-03
104	GO:0032508: DNA duplex unwinding	6.51E-03
105	GO:0010027: thylakoid membrane organization	6.72E-03
106	GO:0017004: cytochrome complex assembly	7.47E-03
107	GO:0071482: cellular response to light stimulus	7.47E-03
108	GO:0019430: removal of superoxide radicals	7.47E-03
109	GO:0032544: plastid translation	7.47E-03
110	GO:0016311: dephosphorylation	8.35E-03
111	GO:0000373: Group II intron splicing	8.47E-03
112	GO:0006098: pentose-phosphate shunt	8.47E-03
113	GO:0009821: alkaloid biosynthetic process	8.47E-03
114	GO:0007568: aging	1.02E-02
115	GO:0032259: methylation	1.04E-02
116	GO:0006949: syncytium formation	1.06E-02
117	GO:0006896: Golgi to vacuole transport	1.06E-02
118	GO:0009637: response to blue light	1.12E-02
119	GO:0018119: peptidyl-cysteine S-nitrosylation	1.18E-02
120	GO:0019684: photosynthesis, light reaction	1.18E-02
121	GO:0009089: lysine biosynthetic process via diaminopimelate	1.18E-02
122	GO:0006415: translational termination	1.18E-02
123	GO:1903507: negative regulation of nucleic acid-templated transcription	1.18E-02
124	GO:0006879: cellular iron ion homeostasis	1.18E-02
125	GO:0006352: DNA-templated transcription, initiation	1.18E-02
126	GO:0055085: transmembrane transport	1.20E-02
127	GO:0016024: CDP-diacylglycerol biosynthetic process	1.30E-02
128	GO:0006094: gluconeogenesis	1.42E-02
129	GO:0009767: photosynthetic electron transport chain	1.42E-02
130	GO:2000012: regulation of auxin polar transport	1.42E-02
131	GO:0006807: nitrogen compound metabolic process	1.42E-02
132	GO:0006006: glucose metabolic process	1.42E-02
133	GO:0010020: chloroplast fission	1.55E-02
134	GO:0019253: reductive pentose-phosphate cycle	1.55E-02
135	GO:0009644: response to high light intensity	1.56E-02
136	GO:0055114: oxidation-reduction process	1.59E-02
137	GO:0006863: purine nucleobase transport	1.81E-02
138	GO:0006833: water transport	1.81E-02
139	GO:0019953: sexual reproduction	2.09E-02
140	GO:0008299: isoprenoid biosynthetic process	2.09E-02
141	GO:0006418: tRNA aminoacylation for protein translation	2.09E-02
142	GO:0007017: microtubule-based process	2.09E-02
143	GO:0048511: rhythmic process	2.24E-02
144	GO:0019915: lipid storage	2.24E-02
145	GO:0006096: glycolytic process	2.31E-02
146	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.38E-02
147	GO:0006012: galactose metabolic process	2.54E-02
148	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.54E-02
149	GO:0009306: protein secretion	2.69E-02
150	GO:0016117: carotenoid biosynthetic process	2.85E-02
151	GO:0042147: retrograde transport, endosome to Golgi	2.85E-02
152	GO:0006396: RNA processing	2.86E-02
153	GO:0008033: tRNA processing	3.01E-02
154	GO:0034220: ion transmembrane transport	3.01E-02
155	GO:0000413: protein peptidyl-prolyl isomerization	3.01E-02
156	GO:0048868: pollen tube development	3.18E-02
157	GO:0071472: cellular response to salt stress	3.18E-02
158	GO:0042752: regulation of circadian rhythm	3.35E-02
159	GO:0019252: starch biosynthetic process	3.52E-02
160	GO:0008654: phospholipid biosynthetic process	3.52E-02
161	GO:0006623: protein targeting to vacuole	3.52E-02
162	GO:0006635: fatty acid beta-oxidation	3.69E-02
163	GO:0002229: defense response to oomycetes	3.69E-02
164	GO:0010193: response to ozone	3.69E-02
165	GO:0006891: intra-Golgi vesicle-mediated transport	3.69E-02
166	GO:0006457: protein folding	3.82E-02
167	GO:0032502: developmental process	3.87E-02
168	GO:0010583: response to cyclopentenone	3.87E-02
169	GO:0016032: viral process	3.87E-02
170	GO:0009828: plant-type cell wall loosening	4.23E-02
171	GO:0006413: translational initiation	4.46E-02
172	GO:0007623: circadian rhythm	4.78E-02
173	GO:0001666: response to hypoxia	4.80E-02
174	GO:0009451: RNA modification	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0050126: N-carbamoylputrescine amidase activity	0.00E+00
2	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
3	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
4	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
5	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
6	GO:0004076: biotin synthase activity	0.00E+00
7	GO:0004059: aralkylamine N-acetyltransferase activity	0.00E+00
8	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
9	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
10	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
11	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
12	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
13	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
14	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
15	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
16	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
17	GO:0010276: phytol kinase activity	0.00E+00
18	GO:0042623: ATPase activity, coupled	0.00E+00
19	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
20	GO:0052832: inositol monophosphate 3-phosphatase activity	6.00E-06
21	GO:0008934: inositol monophosphate 1-phosphatase activity	6.00E-06
22	GO:0052833: inositol monophosphate 4-phosphatase activity	6.00E-06
23	GO:0016168: chlorophyll binding	6.98E-06
24	GO:0070402: NADPH binding	2.10E-05
25	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.57E-05
26	GO:0043495: protein anchor	8.19E-05
27	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.49E-04
28	GO:0022891: substrate-specific transmembrane transporter activity	2.81E-04
29	GO:0019899: enzyme binding	3.23E-04
30	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.65E-04
31	GO:0004830: tryptophan-tRNA ligase activity	3.65E-04
32	GO:0010347: L-galactose-1-phosphate phosphatase activity	3.65E-04
33	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	3.65E-04
34	GO:0004425: indole-3-glycerol-phosphate synthase activity	3.65E-04
35	GO:1990189: peptide-serine-N-acetyltransferase activity	3.65E-04
36	GO:0004813: alanine-tRNA ligase activity	3.65E-04
37	GO:1990190: peptide-glutamate-N-acetyltransferase activity	3.65E-04
38	GO:0004033: aldo-keto reductase (NADP) activity	4.05E-04
39	GO:0008080: N-acetyltransferase activity	4.29E-04
40	GO:0005381: iron ion transmembrane transporter activity	7.02E-04
41	GO:0004617: phosphoglycerate dehydrogenase activity	7.94E-04
42	GO:0030385: ferredoxin:thioredoxin reductase activity	7.94E-04
43	GO:0004826: phenylalanine-tRNA ligase activity	7.94E-04
44	GO:0004829: threonine-tRNA ligase activity	7.94E-04
45	GO:0019172: glyoxalase III activity	7.94E-04
46	GO:0019156: isoamylase activity	7.94E-04
47	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	7.94E-04
48	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	7.94E-04
49	GO:0000049: tRNA binding	1.07E-03
50	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.29E-03
51	GO:0004148: dihydrolipoyl dehydrogenase activity	1.29E-03
52	GO:0004751: ribose-5-phosphate isomerase activity	1.29E-03
53	GO:0019843: rRNA binding	1.39E-03
54	GO:0031409: pigment binding	1.71E-03
55	GO:0035529: NADH pyrophosphatase activity	1.85E-03
56	GO:0004792: thiosulfate sulfurtransferase activity	1.85E-03
57	GO:0016149: translation release factor activity, codon specific	1.85E-03
58	GO:0005528: FK506 binding	1.89E-03
59	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	2.49E-03
60	GO:0004659: prenyltransferase activity	2.49E-03
61	GO:0001053: plastid sigma factor activity	2.49E-03
62	GO:0005319: lipid transporter activity	2.49E-03
63	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.49E-03
64	GO:0008453: alanine-glyoxylate transaminase activity	2.49E-03
65	GO:0004045: aminoacyl-tRNA hydrolase activity	2.49E-03
66	GO:0016987: sigma factor activity	2.49E-03
67	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	2.49E-03
68	GO:0051537: 2 iron, 2 sulfur cluster binding	2.58E-03
69	GO:0003727: single-stranded RNA binding	2.98E-03
70	GO:0004605: phosphatidate cytidylyltransferase activity	3.93E-03
71	GO:0004332: fructose-bisphosphate aldolase activity	3.93E-03
72	GO:0004784: superoxide dismutase activity	3.93E-03
73	GO:0004556: alpha-amylase activity	3.93E-03
74	GO:0004462: lactoylglutathione lyase activity	3.93E-03
75	GO:0016462: pyrophosphatase activity	3.93E-03
76	GO:0042578: phosphoric ester hydrolase activity	3.93E-03
77	GO:0004559: alpha-mannosidase activity	4.74E-03
78	GO:0008195: phosphatidate phosphatase activity	4.74E-03
79	GO:0016597: amino acid binding	6.35E-03
80	GO:0043022: ribosome binding	6.51E-03
81	GO:0003747: translation release factor activity	8.47E-03
82	GO:0016844: strictosidine synthase activity	9.53E-03
83	GO:0003993: acid phosphatase activity	1.17E-02
84	GO:0009055: electron carrier activity	1.24E-02
85	GO:0042802: identical protein binding	1.46E-02
86	GO:0016491: oxidoreductase activity	1.57E-02
87	GO:0005198: structural molecule activity	1.62E-02
88	GO:0051287: NAD binding	1.75E-02
89	GO:0008168: methyltransferase activity	1.79E-02
90	GO:0003714: transcription corepressor activity	1.95E-02
91	GO:0043424: protein histidine kinase binding	2.09E-02
92	GO:0005345: purine nucleobase transmembrane transporter activity	2.09E-02
93	GO:0031625: ubiquitin protein ligase binding	2.16E-02
94	GO:0004176: ATP-dependent peptidase activity	2.24E-02
95	GO:0008233: peptidase activity	2.41E-02
96	GO:0003723: RNA binding	2.58E-02
97	GO:0004812: aminoacyl-tRNA ligase activity	2.85E-02
98	GO:0016746: transferase activity, transferring acyl groups	2.86E-02
99	GO:0016853: isomerase activity	3.35E-02
100	GO:0010181: FMN binding	3.35E-02
101	GO:0048038: quinone binding	3.69E-02
102	GO:0015250: water channel activity	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0009349: riboflavin synthase complex	0.00E+00
2	GO:0010368: chloroplast isoamylase complex	0.00E+00
3	GO:0009507: chloroplast	5.87E-58
4	GO:0009535: chloroplast thylakoid membrane	2.34E-21
5	GO:0009570: chloroplast stroma	4.86E-17
6	GO:0009543: chloroplast thylakoid lumen	2.55E-14
7	GO:0009941: chloroplast envelope	9.24E-11
8	GO:0031977: thylakoid lumen	3.37E-09
9	GO:0009534: chloroplast thylakoid	1.70E-08
10	GO:0031969: chloroplast membrane	7.25E-06
11	GO:0009579: thylakoid	9.69E-06
12	GO:0009523: photosystem II	4.28E-05
13	GO:0009654: photosystem II oxygen evolving complex	1.92E-04
14	GO:0042651: thylakoid membrane	1.92E-04
15	GO:0010287: plastoglobule	2.28E-04
16	GO:0009782: photosystem I antenna complex	3.65E-04
17	GO:0019898: extrinsic component of membrane	5.18E-04
18	GO:0042644: chloroplast nucleoid	5.94E-04
19	GO:0008290: F-actin capping protein complex	7.94E-04
20	GO:0031415: NatA complex	7.94E-04
21	GO:0030095: chloroplast photosystem II	1.37E-03
22	GO:0030076: light-harvesting complex	1.53E-03
23	GO:0042646: plastid nucleoid	1.85E-03
24	GO:0030286: dynein complex	2.49E-03
25	GO:0009526: plastid envelope	2.49E-03
26	GO:0055035: plastid thylakoid membrane	3.18E-03
27	GO:0009533: chloroplast stromal thylakoid	5.60E-03
28	GO:0005778: peroxisomal membrane	5.99E-03
29	GO:0012507: ER to Golgi transport vesicle membrane	6.51E-03
30	GO:0009538: photosystem I reaction center	6.51E-03
31	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	8.47E-03
32	GO:0005777: peroxisome	1.01E-02
33	GO:0012511: monolayer-surrounded lipid storage body	1.18E-02
34	GO:0090404: pollen tube tip	1.18E-02
35	GO:0032040: small-subunit processome	1.30E-02
36	GO:0009508: plastid chromosome	1.42E-02
37	GO:0005875: microtubule associated complex	1.81E-02
38	GO:0005840: ribosome	2.89E-02
39	GO:0009522: photosystem I	3.35E-02
40	GO:0016020: membrane	3.76E-02
41	GO:0009505: plant-type cell wall	3.88E-02
42	GO:0005759: mitochondrial matrix	4.35E-02
43	GO:0009295: nucleoid	4.42E-02
44	GO:0016021: integral component of membrane	4.48E-02
45	GO:0030529: intracellular ribonucleoprotein complex	4.80E-02