co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G16730

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)	0.00E+00
2	GO:0009661: chromoplast organization	0.00E+00
3	GO:0010243: response to organonitrogen compound	0.00E+00
4	GO:0015843: methylammonium transport	0.00E+00
5	GO:0090470: shoot organ boundary specification	0.00E+00
6	GO:0046677: response to antibiotic	0.00E+00
7	GO:0071483: cellular response to blue light	2.15E-08
8	GO:0007623: circadian rhythm	2.86E-07
9	GO:0042754: negative regulation of circadian rhythm	4.63E-07
10	GO:0010100: negative regulation of photomorphogenesis	6.52E-07
11	GO:0010236: plastoquinone biosynthetic process	1.32E-05
12	GO:0009658: chloroplast organization	2.00E-05
13	GO:0009909: regulation of flower development	2.33E-05
14	GO:0010189: vitamin E biosynthetic process	2.87E-05
15	GO:0048574: long-day photoperiodism, flowering	6.46E-05
16	GO:0046467: membrane lipid biosynthetic process	9.33E-05
17	GO:0009640: photomorphogenesis	2.00E-04
18	GO:0043496: regulation of protein homodimerization activity	2.20E-04
19	GO:0050992: dimethylallyl diphosphate biosynthetic process	2.20E-04
20	GO:1904143: positive regulation of carotenoid biosynthetic process	2.20E-04
21	GO:0016122: xanthophyll metabolic process	2.20E-04
22	GO:0009915: phloem sucrose loading	2.20E-04
23	GO:0006898: receptor-mediated endocytosis	2.20E-04
24	GO:0008299: isoprenoid biosynthetic process	3.24E-04
25	GO:0044375: regulation of peroxisome size	3.67E-04
26	GO:0019419: sulfate reduction	3.67E-04
27	GO:0009624: response to nematode	4.73E-04
28	GO:0015696: ammonium transport	5.28E-04
29	GO:0006168: adenine salvage	5.28E-04
30	GO:2001141: regulation of RNA biosynthetic process	5.28E-04
31	GO:0010371: regulation of gibberellin biosynthetic process	5.28E-04
32	GO:0006166: purine ribonucleoside salvage	5.28E-04
33	GO:0071484: cellular response to light intensity	5.28E-04
34	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	5.28E-04
35	GO:0019252: starch biosynthetic process	6.66E-04
36	GO:0071585: detoxification of cadmium ion	7.02E-04
37	GO:0009902: chloroplast relocation	7.02E-04
38	GO:0010021: amylopectin biosynthetic process	7.02E-04
39	GO:0015994: chlorophyll metabolic process	7.02E-04
40	GO:0072488: ammonium transmembrane transport	7.02E-04
41	GO:0010117: photoprotection	8.88E-04
42	GO:0009904: chloroplast accumulation movement	8.88E-04
43	GO:0044209: AMP salvage	8.88E-04
44	GO:0016120: carotene biosynthetic process	8.88E-04
45	GO:0071805: potassium ion transmembrane transport	9.05E-04
46	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.08E-03
47	GO:0009903: chloroplast avoidance movement	1.29E-03
48	GO:0009648: photoperiodism	1.29E-03
49	GO:0070370: cellular heat acclimation	1.51E-03
50	GO:0045893: positive regulation of transcription, DNA-templated	1.71E-03
51	GO:0050821: protein stabilization	1.75E-03
52	GO:0016559: peroxisome fission	1.75E-03
53	GO:0009932: cell tip growth	2.00E-03
54	GO:0034765: regulation of ion transmembrane transport	2.25E-03
55	GO:0009644: response to high light intensity	2.27E-03
56	GO:0045454: cell redox homeostasis	2.64E-03
57	GO:0000103: sulfate assimilation	2.80E-03
58	GO:0009641: shade avoidance	2.80E-03
59	GO:0009970: cellular response to sulfate starvation	2.80E-03
60	GO:0006995: cellular response to nitrogen starvation	2.80E-03
61	GO:0006352: DNA-templated transcription, initiation	3.09E-03
62	GO:0016485: protein processing	3.09E-03
63	GO:0009773: photosynthetic electron transport in photosystem I	3.09E-03
64	GO:0008285: negative regulation of cell proliferation	3.09E-03
65	GO:0009767: photosynthetic electron transport chain	3.69E-03
66	GO:0005986: sucrose biosynthetic process	3.69E-03
67	GO:0009785: blue light signaling pathway	3.69E-03
68	GO:0006355: regulation of transcription, DNA-templated	3.75E-03
69	GO:0010207: photosystem II assembly	4.01E-03
70	GO:0007015: actin filament organization	4.01E-03
71	GO:0010223: secondary shoot formation	4.01E-03
72	GO:0009266: response to temperature stimulus	4.01E-03
73	GO:0007031: peroxisome organization	4.33E-03
74	GO:0042343: indole glucosinolate metabolic process	4.33E-03
75	GO:0006071: glycerol metabolic process	4.67E-03
76	GO:0051017: actin filament bundle assembly	5.01E-03
77	GO:0019344: cysteine biosynthetic process	5.01E-03
78	GO:0055114: oxidation-reduction process	5.07E-03
79	GO:0010073: meristem maintenance	5.36E-03
80	GO:0098542: defense response to other organism	5.72E-03
81	GO:0010017: red or far-red light signaling pathway	6.09E-03
82	GO:0009409: response to cold	6.40E-03
83	GO:0010227: floral organ abscission	6.47E-03
84	GO:0006817: phosphate ion transport	6.85E-03
85	GO:0009416: response to light stimulus	7.13E-03
86	GO:0010228: vegetative to reproductive phase transition of meristem	7.20E-03
87	GO:0006810: transport	7.24E-03
88	GO:0006606: protein import into nucleus	7.65E-03
89	GO:0042391: regulation of membrane potential	7.65E-03
90	GO:0009739: response to gibberellin	7.69E-03
91	GO:0010182: sugar mediated signaling pathway	8.06E-03
92	GO:0042752: regulation of circadian rhythm	8.47E-03
93	GO:0009567: double fertilization forming a zygote and endosperm	1.07E-02
94	GO:0006351: transcription, DNA-templated	1.14E-02
95	GO:0016126: sterol biosynthetic process	1.21E-02
96	GO:0009723: response to ethylene	1.23E-02
97	GO:0009737: response to abscisic acid	1.27E-02
98	GO:0015995: chlorophyll biosynthetic process	1.36E-02
99	GO:0044550: secondary metabolite biosynthetic process	1.44E-02
100	GO:0018298: protein-chromophore linkage	1.46E-02
101	GO:0008219: cell death	1.46E-02
102	GO:0015979: photosynthesis	1.51E-02
103	GO:0010218: response to far red light	1.56E-02
104	GO:0006811: ion transport	1.56E-02
105	GO:0045892: negative regulation of transcription, DNA-templated	1.61E-02
106	GO:0006865: amino acid transport	1.67E-02
107	GO:0009637: response to blue light	1.73E-02
108	GO:0006979: response to oxidative stress	1.76E-02
109	GO:0034599: cellular response to oxidative stress	1.78E-02
110	GO:0009751: response to salicylic acid	1.93E-02
111	GO:0006631: fatty acid metabolic process	1.95E-02
112	GO:0042542: response to hydrogen peroxide	2.01E-02
113	GO:0010114: response to red light	2.07E-02
114	GO:0009753: response to jasmonic acid	2.10E-02
115	GO:0031347: regulation of defense response	2.37E-02
116	GO:0042538: hyperosmotic salinity response	2.43E-02
117	GO:0006813: potassium ion transport	2.55E-02
118	GO:0010224: response to UV-B	2.62E-02
119	GO:0006096: glycolytic process	2.88E-02
120	GO:0046686: response to cadmium ion	3.04E-02
121	GO:0042744: hydrogen peroxide catabolic process	4.22E-02
122	GO:0016036: cellular response to phosphate starvation	4.61E-02

Rank	GO Term	Adjusted P value
1	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
2	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
3	GO:0050342: tocopherol O-methyltransferase activity	0.00E+00
4	GO:0009673: low-affinity phosphate transmembrane transporter activity	0.00E+00
5	GO:0009976: tocopherol cyclase activity	0.00E+00
6	GO:0033840: NDP-glucose-starch glucosyltransferase activity	0.00E+00
7	GO:0050347: trans-octaprenyltranstransferase activity	4.63E-07
8	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	4.63E-07
9	GO:0000989: transcription factor activity, transcription factor binding	9.28E-07
10	GO:0004373: glycogen (starch) synthase activity	1.76E-06
11	GO:0009011: starch synthase activity	7.97E-06
12	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	9.33E-05
13	GO:0004328: formamidase activity	9.33E-05
14	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	9.33E-05
15	GO:0035671: enone reductase activity	9.33E-05
16	GO:0019904: protein domain specific binding	1.37E-04
17	GO:0009973: adenylyl-sulfate reductase activity	2.20E-04
18	GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity	2.20E-04
19	GO:0033741: adenylyl-sulfate reductase (glutathione) activity	2.20E-04
20	GO:0033201: alpha-1,4-glucan synthase activity	2.20E-04
21	GO:0015173: aromatic amino acid transmembrane transporter activity	2.20E-04
22	GO:0050307: sucrose-phosphate phosphatase activity	3.67E-04
23	GO:0004096: catalase activity	3.67E-04
24	GO:0004180: carboxypeptidase activity	3.67E-04
25	GO:0010277: chlorophyllide a oxygenase [overall] activity	3.67E-04
26	GO:0003913: DNA photolyase activity	3.67E-04
27	GO:0003999: adenine phosphoribosyltransferase activity	5.28E-04
28	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	5.28E-04
29	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	5.28E-04
30	GO:0015175: neutral amino acid transmembrane transporter activity	5.28E-04
31	GO:0001053: plastid sigma factor activity	7.02E-04
32	GO:0016987: sigma factor activity	7.02E-04
33	GO:0004506: squalene monooxygenase activity	7.02E-04
34	GO:0003700: transcription factor activity, sequence-specific DNA binding	8.44E-04
35	GO:0051538: 3 iron, 4 sulfur cluster binding	8.88E-04
36	GO:0008519: ammonium transmembrane transporter activity	1.08E-03
37	GO:0004709: MAP kinase kinase kinase activity	1.08E-03
38	GO:0000293: ferric-chelate reductase activity	1.08E-03
39	GO:0042802: identical protein binding	1.25E-03
40	GO:0005242: inward rectifier potassium channel activity	1.29E-03
41	GO:0009881: photoreceptor activity	1.51E-03
42	GO:0030674: protein binding, bridging	1.75E-03
43	GO:0008889: glycerophosphodiester phosphodiesterase activity	2.25E-03
44	GO:0008270: zinc ion binding	3.02E-03
45	GO:0005315: inorganic phosphate transmembrane transporter activity	3.69E-03
46	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	3.69E-03
47	GO:0015079: potassium ion transmembrane transporter activity	5.36E-03
48	GO:0005249: voltage-gated potassium channel activity	7.65E-03
49	GO:0030551: cyclic nucleotide binding	7.65E-03
50	GO:0004527: exonuclease activity	8.06E-03
51	GO:0008080: N-acetyltransferase activity	8.06E-03
52	GO:0016853: isomerase activity	8.47E-03
53	GO:0010181: FMN binding	8.47E-03
54	GO:0005515: protein binding	9.44E-03
55	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.02E-02
56	GO:0016791: phosphatase activity	1.07E-02
57	GO:0004721: phosphoprotein phosphatase activity	1.36E-02
58	GO:0008236: serine-type peptidase activity	1.41E-02
59	GO:0050897: cobalt ion binding	1.62E-02
60	GO:0030145: manganese ion binding	1.62E-02
61	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1.71E-02
62	GO:0005506: iron ion binding	1.71E-02
63	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.84E-02
64	GO:0009055: electron carrier activity	2.10E-02
65	GO:0051537: 2 iron, 2 sulfur cluster binding	2.18E-02
66	GO:0015293: symporter activity	2.24E-02
67	GO:0016491: oxidoreductase activity	2.47E-02
68	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.55E-02
69	GO:0015171: amino acid transmembrane transporter activity	2.75E-02
70	GO:0016887: ATPase activity	3.03E-02
71	GO:0020037: heme binding	3.09E-02
72	GO:0015035: protein disulfide oxidoreductase activity	3.35E-02
73	GO:0016746: transferase activity, transferring acyl groups	3.35E-02
74	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.93E-02
75	GO:0008565: protein transporter activity	4.38E-02
76	GO:0019825: oxygen binding	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	2.35E-05
2	GO:0045254: pyruvate dehydrogenase complex	2.20E-04
3	GO:0009569: chloroplast starch grain	2.20E-04
4	GO:0009706: chloroplast inner membrane	4.73E-04
5	GO:0010319: stromule	9.05E-04
6	GO:0031982: vesicle	1.75E-03
7	GO:0009501: amyloplast	1.75E-03
8	GO:0009514: glyoxysome	2.00E-03
9	GO:0005779: integral component of peroxisomal membrane	2.00E-03
10	GO:0005884: actin filament	3.09E-03
11	GO:0009535: chloroplast thylakoid membrane	3.69E-03
12	GO:0010287: plastoglobule	4.73E-03
13	GO:0042651: thylakoid membrane	5.36E-03
14	GO:0009532: plastid stroma	5.72E-03
15	GO:0005777: peroxisome	8.49E-03
16	GO:0009534: chloroplast thylakoid	9.06E-03
17	GO:0005778: peroxisomal membrane	1.11E-02
18	GO:0031969: chloroplast membrane	1.32E-02
19	GO:0009941: chloroplast envelope	1.34E-02
20	GO:0009536: plastid	2.26E-02
21	GO:0009570: chloroplast stroma	2.36E-02
22	GO:0005887: integral component of plasma membrane	2.66E-02
23	GO:0005759: mitochondrial matrix	4.53E-02