co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G16720

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000505: regulation of energy homeostasis	0.00E+00
2	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
3	GO:0098586: cellular response to virus	0.00E+00
4	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
5	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
6	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
7	GO:0015882: L-ascorbic acid transport	0.00E+00
8	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
9	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
10	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
11	GO:0070125: mitochondrial translational elongation	0.00E+00
12	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
13	GO:0015979: photosynthesis	9.19E-11
14	GO:0015995: chlorophyll biosynthetic process	2.93E-08
15	GO:0018298: protein-chromophore linkage	4.11E-08
16	GO:0009644: response to high light intensity	2.59E-07
17	GO:0009768: photosynthesis, light harvesting in photosystem I	1.53E-06
18	GO:0042853: L-alanine catabolic process	2.01E-06
19	GO:0009645: response to low light intensity stimulus	2.03E-06
20	GO:0009642: response to light intensity	3.11E-06
21	GO:0010114: response to red light	5.25E-06
22	GO:0006000: fructose metabolic process	7.40E-06
23	GO:0090391: granum assembly	7.40E-06
24	GO:0010136: ureide catabolic process	7.40E-06
25	GO:0009773: photosynthetic electron transport in photosystem I	1.48E-05
26	GO:0006145: purine nucleobase catabolic process	1.69E-05
27	GO:0019253: reductive pentose-phosphate cycle	2.86E-05
28	GO:0006021: inositol biosynthetic process	3.11E-05
29	GO:0055114: oxidation-reduction process	3.30E-05
30	GO:0016123: xanthophyll biosynthetic process	5.00E-05
31	GO:0009853: photorespiration	5.47E-05
32	GO:0010196: nonphotochemical quenching	1.35E-04
33	GO:0009769: photosynthesis, light harvesting in photosystem II	1.35E-04
34	GO:0018002: N-terminal peptidyl-glutamic acid acetylation	2.06E-04
35	GO:0031426: polycistronic mRNA processing	2.06E-04
36	GO:1904966: positive regulation of vitamin E biosynthetic process	2.06E-04
37	GO:0006475: internal protein amino acid acetylation	2.06E-04
38	GO:0051775: response to redox state	2.06E-04
39	GO:0071277: cellular response to calcium ion	2.06E-04
40	GO:0000481: maturation of 5S rRNA	2.06E-04
41	GO:1904964: positive regulation of phytol biosynthetic process	2.06E-04
42	GO:0006474: N-terminal protein amino acid acetylation	2.06E-04
43	GO:0017198: N-terminal peptidyl-serine acetylation	2.06E-04
44	GO:0043609: regulation of carbon utilization	2.06E-04
45	GO:0010028: xanthophyll cycle	2.06E-04
46	GO:0034337: RNA folding	2.06E-04
47	GO:0006419: alanyl-tRNA aminoacylation	2.06E-04
48	GO:0006002: fructose 6-phosphate metabolic process	2.15E-04
49	GO:0009657: plastid organization	2.15E-04
50	GO:0010206: photosystem II repair	2.61E-04
51	GO:0010027: thylakoid membrane organization	3.13E-04
52	GO:0043085: positive regulation of catalytic activity	4.23E-04
53	GO:0009416: response to light stimulus	4.34E-04
54	GO:0046741: transport of virus in host, tissue to tissue	4.62E-04
55	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.62E-04
56	GO:0010042: response to manganese ion	4.62E-04
57	GO:0042548: regulation of photosynthesis, light reaction	4.62E-04
58	GO:0030187: melatonin biosynthetic process	4.62E-04
59	GO:0006432: phenylalanyl-tRNA aminoacylation	4.62E-04
60	GO:0006435: threonyl-tRNA aminoacylation	4.62E-04
61	GO:0000256: allantoin catabolic process	4.62E-04
62	GO:0097054: L-glutamate biosynthetic process	4.62E-04
63	GO:0006729: tetrahydrobiopterin biosynthetic process	4.62E-04
64	GO:0006568: tryptophan metabolic process	4.62E-04
65	GO:0030388: fructose 1,6-bisphosphate metabolic process	4.62E-04
66	GO:0006790: sulfur compound metabolic process	4.85E-04
67	GO:0010218: response to far red light	5.03E-04
68	GO:0006006: glucose metabolic process	5.50E-04
69	GO:0006094: gluconeogenesis	5.50E-04
70	GO:0005986: sucrose biosynthetic process	5.50E-04
71	GO:0009637: response to blue light	6.01E-04
72	GO:0034599: cellular response to oxidative stress	6.35E-04
73	GO:0046854: phosphatidylinositol phosphorylation	6.92E-04
74	GO:0009405: pathogenesis	7.52E-04
75	GO:0006433: prolyl-tRNA aminoacylation	7.52E-04
76	GO:0002230: positive regulation of defense response to virus by host	7.52E-04
77	GO:1901672: positive regulation of systemic acquired resistance	7.52E-04
78	GO:0005977: glycogen metabolic process	7.52E-04
79	GO:0009269: response to desiccation	1.02E-03
80	GO:0006107: oxaloacetate metabolic process	1.07E-03
81	GO:0010239: chloroplast mRNA processing	1.07E-03
82	GO:0006537: glutamate biosynthetic process	1.07E-03
83	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.07E-03
84	GO:0046739: transport of virus in multicellular host	1.07E-03
85	GO:0043572: plastid fission	1.07E-03
86	GO:0006020: inositol metabolic process	1.07E-03
87	GO:0071484: cellular response to light intensity	1.07E-03
88	GO:0031935: regulation of chromatin silencing	1.43E-03
89	GO:0009765: photosynthesis, light harvesting	1.43E-03
90	GO:0006109: regulation of carbohydrate metabolic process	1.43E-03
91	GO:0015994: chlorophyll metabolic process	1.43E-03
92	GO:0006734: NADH metabolic process	1.43E-03
93	GO:0009902: chloroplast relocation	1.43E-03
94	GO:0010021: amylopectin biosynthetic process	1.43E-03
95	GO:0010109: regulation of photosynthesis	1.43E-03
96	GO:0019676: ammonia assimilation cycle	1.43E-03
97	GO:0006545: glycine biosynthetic process	1.43E-03
98	GO:0006096: glycolytic process	1.47E-03
99	GO:0006662: glycerol ether metabolic process	1.66E-03
100	GO:0034052: positive regulation of plant-type hypersensitive response	1.81E-03
101	GO:0010117: photoprotection	1.81E-03
102	GO:0006282: regulation of DNA repair	1.81E-03
103	GO:0009791: post-embryonic development	1.91E-03
104	GO:0019252: starch biosynthetic process	1.91E-03
105	GO:0046855: inositol phosphate dephosphorylation	2.24E-03
106	GO:0009643: photosynthetic acclimation	2.24E-03
107	GO:0050665: hydrogen peroxide biosynthetic process	2.24E-03
108	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.24E-03
109	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.24E-03
110	GO:0071470: cellular response to osmotic stress	2.69E-03
111	GO:0010189: vitamin E biosynthetic process	2.69E-03
112	GO:0009854: oxidative photosynthetic carbon pathway	2.69E-03
113	GO:0051607: defense response to virus	2.77E-03
114	GO:0009793: embryo development ending in seed dormancy	3.02E-03
115	GO:0030026: cellular manganese ion homeostasis	3.16E-03
116	GO:0006400: tRNA modification	3.16E-03
117	GO:0048528: post-embryonic root development	3.16E-03
118	GO:0009409: response to cold	3.21E-03
119	GO:0048564: photosystem I assembly	3.67E-03
120	GO:0009704: de-etiolation	3.67E-03
121	GO:0032508: DNA duplex unwinding	3.67E-03
122	GO:0007623: circadian rhythm	3.72E-03
123	GO:0071482: cellular response to light stimulus	4.20E-03
124	GO:0009821: alkaloid biosynthetic process	4.75E-03
125	GO:0006098: pentose-phosphate shunt	4.75E-03
126	GO:0090333: regulation of stomatal closure	4.75E-03
127	GO:0048507: meristem development	4.75E-03
128	GO:0006754: ATP biosynthetic process	4.75E-03
129	GO:0098656: anion transmembrane transport	4.75E-03
130	GO:1900426: positive regulation of defense response to bacterium	5.32E-03
131	GO:0009688: abscisic acid biosynthetic process	5.93E-03
132	GO:0009744: response to sucrose	6.23E-03
133	GO:0009658: chloroplast organization	6.48E-03
134	GO:0009735: response to cytokinin	6.50E-03
135	GO:0006415: translational termination	6.55E-03
136	GO:0018119: peptidyl-cysteine S-nitrosylation	6.55E-03
137	GO:0006108: malate metabolic process	7.87E-03
138	GO:0009767: photosynthetic electron transport chain	7.87E-03
139	GO:0010020: chloroplast fission	8.56E-03
140	GO:0046688: response to copper ion	9.27E-03
141	GO:0006833: water transport	1.00E-02
142	GO:0045454: cell redox homeostasis	1.07E-02
143	GO:0055085: transmembrane transport	1.07E-02
144	GO:0008299: isoprenoid biosynthetic process	1.15E-02
145	GO:0006418: tRNA aminoacylation for protein translation	1.15E-02
146	GO:0006825: copper ion transport	1.15E-02
147	GO:0051302: regulation of cell division	1.15E-02
148	GO:0006396: RNA processing	1.23E-02
149	GO:0046686: response to cadmium ion	1.36E-02
150	GO:0009408: response to heat	1.40E-02
151	GO:0016117: carotenoid biosynthetic process	1.57E-02
152	GO:0009058: biosynthetic process	1.59E-02
153	GO:0034220: ion transmembrane transport	1.66E-02
154	GO:0010182: sugar mediated signaling pathway	1.75E-02
155	GO:0006413: translational initiation	1.94E-02
156	GO:0008654: phospholipid biosynthetic process	1.94E-02
157	GO:0000302: response to reactive oxygen species	2.03E-02
158	GO:0031047: gene silencing by RNA	2.13E-02
159	GO:0016032: viral process	2.13E-02
160	GO:0030163: protein catabolic process	2.23E-02
161	GO:0001666: response to hypoxia	2.64E-02
162	GO:0009816: defense response to bacterium, incompatible interaction	2.75E-02
163	GO:0016311: dephosphorylation	3.08E-02
164	GO:0035556: intracellular signal transduction	3.08E-02
165	GO:0048481: plant ovule development	3.19E-02
166	GO:0006499: N-terminal protein myristoylation	3.42E-02
167	GO:0006811: ion transport	3.42E-02
168	GO:0007568: aging	3.54E-02
169	GO:0016051: carbohydrate biosynthetic process	3.78E-02
170	GO:0006099: tricarboxylic acid cycle	3.90E-02
171	GO:0006457: protein folding	3.96E-02
172	GO:0005975: carbohydrate metabolic process	3.96E-02
173	GO:0042542: response to hydrogen peroxide	4.40E-02

Rank	GO Term	Adjusted P value
1	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
2	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
3	GO:0047958: glycine:2-oxoglutarate aminotransferase activity	0.00E+00
4	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
5	GO:0045550: geranylgeranyl reductase activity	0.00E+00
6	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
7	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
8	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
9	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
10	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
11	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
12	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
13	GO:0003858: 3-hydroxybutyrate dehydrogenase activity	0.00E+00
14	GO:0010486: manganese:proton antiporter activity	0.00E+00
15	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
16	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
17	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
18	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
19	GO:0047652: allantoate deiminase activity	0.00E+00
20	GO:0004059: aralkylamine N-acetyltransferase activity	0.00E+00
21	GO:0016168: chlorophyll binding	2.05E-08
22	GO:0008453: alanine-glyoxylate transaminase activity	1.60E-07
23	GO:0031409: pigment binding	9.52E-07
24	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	2.01E-06
25	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	1.69E-05
26	GO:0016851: magnesium chelatase activity	1.69E-05
27	GO:0046872: metal ion binding	9.30E-05
28	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.02E-04
29	GO:0008080: N-acetyltransferase activity	1.40E-04
30	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.06E-04
31	GO:1990189: peptide-serine-N-acetyltransferase activity	2.06E-04
32	GO:0004813: alanine-tRNA ligase activity	2.06E-04
33	GO:0004008: copper-exporting ATPase activity	2.06E-04
34	GO:1990190: peptide-glutamate-N-acetyltransferase activity	2.06E-04
35	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	2.06E-04
36	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.06E-04
37	GO:0008746: NAD(P)+ transhydrogenase activity	2.06E-04
38	GO:0016041: glutamate synthase (ferredoxin) activity	2.06E-04
39	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	2.06E-04
40	GO:0035671: enone reductase activity	2.06E-04
41	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	2.06E-04
42	GO:0008047: enzyme activator activity	3.65E-04
43	GO:0052832: inositol monophosphate 3-phosphatase activity	4.62E-04
44	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.62E-04
45	GO:0008934: inositol monophosphate 1-phosphatase activity	4.62E-04
46	GO:0004829: threonine-tRNA ligase activity	4.62E-04
47	GO:0019172: glyoxalase III activity	4.62E-04
48	GO:0052833: inositol monophosphate 4-phosphatase activity	4.62E-04
49	GO:0019156: isoamylase activity	4.62E-04
50	GO:0004826: phenylalanine-tRNA ligase activity	4.62E-04
51	GO:0004512: inositol-3-phosphate synthase activity	4.62E-04
52	GO:0019200: carbohydrate kinase activity	4.62E-04
53	GO:0010291: carotene beta-ring hydroxylase activity	4.62E-04
54	GO:0047746: chlorophyllase activity	4.62E-04
55	GO:0000049: tRNA binding	4.85E-04
56	GO:0010277: chlorophyllide a oxygenase [overall] activity	7.52E-04
57	GO:0004827: proline-tRNA ligase activity	7.52E-04
58	GO:0003913: DNA photolyase activity	7.52E-04
59	GO:0004148: dihydrolipoyl dehydrogenase activity	7.52E-04
60	GO:0050307: sucrose-phosphate phosphatase activity	7.52E-04
61	GO:0004751: ribose-5-phosphate isomerase activity	7.52E-04
62	GO:0030267: glyoxylate reductase (NADP) activity	7.52E-04
63	GO:0070402: NADPH binding	7.52E-04
64	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	7.52E-04
65	GO:0048027: mRNA 5'-UTR binding	1.07E-03
66	GO:0004792: thiosulfate sulfurtransferase activity	1.07E-03
67	GO:0016149: translation release factor activity, codon specific	1.07E-03
68	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.07E-03
69	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.07E-03
70	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.07E-03
71	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.07E-03
72	GO:0022891: substrate-specific transmembrane transporter activity	1.21E-03
73	GO:0043495: protein anchor	1.43E-03
74	GO:0008891: glycolate oxidase activity	1.43E-03
75	GO:0047134: protein-disulfide reductase activity	1.43E-03
76	GO:0004791: thioredoxin-disulfide reductase activity	1.78E-03
77	GO:0016853: isomerase activity	1.78E-03
78	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.81E-03
79	GO:0051538: 3 iron, 4 sulfur cluster binding	1.81E-03
80	GO:0004332: fructose-bisphosphate aldolase activity	2.24E-03
81	GO:0004556: alpha-amylase activity	2.24E-03
82	GO:0000293: ferric-chelate reductase activity	2.24E-03
83	GO:0004462: lactoylglutathione lyase activity	2.24E-03
84	GO:0042578: phosphoric ester hydrolase activity	2.24E-03
85	GO:0016615: malate dehydrogenase activity	2.24E-03
86	GO:2001070: starch binding	2.24E-03
87	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.32E-03
88	GO:0004017: adenylate kinase activity	2.69E-03
89	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.69E-03
90	GO:0030060: L-malate dehydrogenase activity	2.69E-03
91	GO:0019899: enzyme binding	3.16E-03
92	GO:0008236: serine-type peptidase activity	3.63E-03
93	GO:0005375: copper ion transmembrane transporter activity	4.20E-03
94	GO:0008135: translation factor activity, RNA binding	4.20E-03
95	GO:0071949: FAD binding	4.75E-03
96	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	4.75E-03
97	GO:0003747: translation release factor activity	4.75E-03
98	GO:0003746: translation elongation factor activity	4.84E-03
99	GO:0045309: protein phosphorylated amino acid binding	5.32E-03
100	GO:0005384: manganese ion transmembrane transporter activity	5.32E-03
101	GO:0016844: strictosidine synthase activity	5.32E-03
102	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	5.32E-03
103	GO:0016887: ATPase activity	6.06E-03
104	GO:0019904: protein domain specific binding	6.55E-03
105	GO:0005198: structural molecule activity	7.00E-03
106	GO:0051287: NAD binding	7.55E-03
107	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	7.87E-03
108	GO:0005315: inorganic phosphate transmembrane transporter activity	7.87E-03
109	GO:0031072: heat shock protein binding	7.87E-03
110	GO:0004857: enzyme inhibitor activity	1.08E-02
111	GO:0008324: cation transmembrane transporter activity	1.15E-02
112	GO:0004176: ATP-dependent peptidase activity	1.23E-02
113	GO:0015035: protein disulfide oxidoreductase activity	1.23E-02
114	GO:0003727: single-stranded RNA binding	1.48E-02
115	GO:0008514: organic anion transmembrane transporter activity	1.48E-02
116	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.54E-02
117	GO:0004812: aminoacyl-tRNA ligase activity	1.57E-02
118	GO:0030170: pyridoxal phosphate binding	1.67E-02
119	GO:0010181: FMN binding	1.84E-02
120	GO:0005506: iron ion binding	2.10E-02
121	GO:0003743: translation initiation factor activity	2.43E-02
122	GO:0008237: metallopeptidase activity	2.43E-02
123	GO:0016597: amino acid binding	2.54E-02
124	GO:0042802: identical protein binding	2.64E-02
125	GO:0015250: water channel activity	2.64E-02
126	GO:0004721: phosphoprotein phosphatase activity	2.97E-02
127	GO:0016491: oxidoreductase activity	3.23E-02
128	GO:0050897: cobalt ion binding	3.54E-02
129	GO:0030145: manganese ion binding	3.54E-02
130	GO:0003993: acid phosphatase activity	3.90E-02
131	GO:0050661: NADP binding	4.15E-02
132	GO:0005524: ATP binding	4.44E-02
133	GO:0043621: protein self-association	4.78E-02
134	GO:0051537: 2 iron, 2 sulfur cluster binding	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009507: chloroplast	3.52E-59
3	GO:0009535: chloroplast thylakoid membrane	9.30E-31
4	GO:0009570: chloroplast stroma	3.36E-27
5	GO:0009534: chloroplast thylakoid	4.07E-24
6	GO:0009941: chloroplast envelope	4.58E-21
7	GO:0009579: thylakoid	1.88E-14
8	GO:0010287: plastoglobule	5.00E-09
9	GO:0009543: chloroplast thylakoid lumen	1.52E-07
10	GO:0031977: thylakoid lumen	1.55E-07
11	GO:0009523: photosystem II	2.06E-07
12	GO:0010007: magnesium chelatase complex	7.40E-06
13	GO:0048046: apoplast	1.96E-05
14	GO:0009517: PSII associated light-harvesting complex II	3.11E-05
15	GO:0030076: light-harvesting complex	3.45E-05
16	GO:0031969: chloroplast membrane	4.69E-05
17	GO:0042651: thylakoid membrane	5.71E-05
18	GO:0009522: photosystem I	1.55E-04
19	GO:0009782: photosystem I antenna complex	2.06E-04
20	GO:0017101: aminoacyl-tRNA synthetase multienzyme complex	2.06E-04
21	GO:0009706: chloroplast inner membrane	2.73E-04
22	GO:0031415: NatA complex	4.62E-04
23	GO:0005759: mitochondrial matrix	5.59E-04
24	GO:0005623: cell	2.56E-03
25	GO:0010319: stromule	2.62E-03
26	GO:0009707: chloroplast outer membrane	3.82E-03
27	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.75E-03
28	GO:0042644: chloroplast nucleoid	4.75E-03
29	GO:0032040: small-subunit processome	7.20E-03
30	GO:0005777: peroxisome	9.17E-03
31	GO:0016020: membrane	9.89E-03
32	GO:0005739: mitochondrion	1.01E-02
33	GO:0009654: photosystem II oxygen evolving complex	1.15E-02
34	GO:0005770: late endosome	1.75E-02
35	GO:0019898: extrinsic component of membrane	1.94E-02
36	GO:0022626: cytosolic ribosome	2.73E-02
37	GO:0031902: late endosome membrane	4.27E-02