Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G16460

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
2GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
3GO:0042820: vitamin B6 catabolic process0.00E+00
4GO:0015882: L-ascorbic acid transport0.00E+00
5GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
6GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
7GO:0006114: glycerol biosynthetic process0.00E+00
8GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
9GO:0070125: mitochondrial translational elongation0.00E+00
10GO:1901401: regulation of tetrapyrrole metabolic process0.00E+00
11GO:2000505: regulation of energy homeostasis0.00E+00
12GO:1901918: negative regulation of exoribonuclease activity0.00E+00
13GO:0098586: cellular response to virus0.00E+00
14GO:0017009: protein-phycocyanobilin linkage0.00E+00
15GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
16GO:0042821: pyridoxal biosynthetic process0.00E+00
17GO:0015979: photosynthesis1.93E-10
18GO:0018298: protein-chromophore linkage6.32E-08
19GO:0006021: inositol biosynthetic process2.05E-07
20GO:0009768: photosynthesis, light harvesting in photosystem I2.07E-06
21GO:0009642: response to light intensity3.94E-06
22GO:0010114: response to red light7.40E-06
23GO:0006000: fructose metabolic process8.79E-06
24GO:0090391: granum assembly8.79E-06
25GO:0009773: photosynthetic electron transport in photosystem I1.85E-05
26GO:0006790: sulfur compound metabolic process2.34E-05
27GO:0010027: thylakoid membrane organization2.64E-05
28GO:0010207: photosystem II assembly3.55E-05
29GO:0015995: chlorophyll biosynthetic process3.67E-05
30GO:0046854: phosphatidylinositol phosphorylation4.28E-05
31GO:0046855: inositol phosphate dephosphorylation8.60E-05
32GO:0009793: embryo development ending in seed dormancy1.17E-04
33GO:0009644: response to high light intensity1.30E-04
34GO:0009645: response to low light intensity stimulus1.57E-04
35GO:0010196: nonphotochemical quenching1.57E-04
36GO:0048564: photosystem I assembly2.00E-04
37GO:0019252: starch biosynthetic process2.07E-04
38GO:1904966: positive regulation of vitamin E biosynthetic process2.27E-04
39GO:0006475: internal protein amino acid acetylation2.27E-04
40GO:0051775: response to redox state2.27E-04
41GO:0071277: cellular response to calcium ion2.27E-04
42GO:0000481: maturation of 5S rRNA2.27E-04
43GO:1904964: positive regulation of phytol biosynthetic process2.27E-04
44GO:0006474: N-terminal protein amino acid acetylation2.27E-04
45GO:0017198: N-terminal peptidyl-serine acetylation2.27E-04
46GO:0043609: regulation of carbon utilization2.27E-04
47GO:0043007: maintenance of rDNA2.27E-04
48GO:0010028: xanthophyll cycle2.27E-04
49GO:0034337: RNA folding2.27E-04
50GO:0006419: alanyl-tRNA aminoacylation2.27E-04
51GO:0009443: pyridoxal 5'-phosphate salvage2.27E-04
52GO:0018002: N-terminal peptidyl-glutamic acid acetylation2.27E-04
53GO:0009657: plastid organization2.48E-04
54GO:0006002: fructose 6-phosphate metabolic process2.48E-04
55GO:0010206: photosystem II repair3.00E-04
56GO:0055114: oxidation-reduction process4.80E-04
57GO:0043085: positive regulation of catalytic activity4.83E-04
58GO:0042548: regulation of photosynthesis, light reaction5.05E-04
59GO:0030187: melatonin biosynthetic process5.05E-04
60GO:0006432: phenylalanyl-tRNA aminoacylation5.05E-04
61GO:0000256: allantoin catabolic process5.05E-04
62GO:0006435: threonyl-tRNA aminoacylation5.05E-04
63GO:0097054: L-glutamate biosynthetic process5.05E-04
64GO:0006729: tetrahydrobiopterin biosynthetic process5.05E-04
65GO:0006568: tryptophan metabolic process5.05E-04
66GO:0030388: fructose 1,6-bisphosphate metabolic process5.05E-04
67GO:0042853: L-alanine catabolic process5.05E-04
68GO:0046741: transport of virus in host, tissue to tissue5.05E-04
69GO:1902326: positive regulation of chlorophyll biosynthetic process5.05E-04
70GO:0010218: response to far red light5.98E-04
71GO:0006094: gluconeogenesis6.27E-04
72GO:0019253: reductive pentose-phosphate cycle7.06E-04
73GO:0010020: chloroplast fission7.06E-04
74GO:0009637: response to blue light7.12E-04
75GO:0009853: photorespiration7.12E-04
76GO:0034599: cellular response to oxidative stress7.52E-04
77GO:0010136: ureide catabolic process8.21E-04
78GO:0005977: glycogen metabolic process8.21E-04
79GO:0009405: pathogenesis8.21E-04
80GO:0042989: sequestering of actin monomers1.17E-03
81GO:0046739: transport of virus in multicellular host1.17E-03
82GO:0042823: pyridoxal phosphate biosynthetic process1.17E-03
83GO:0043572: plastid fission1.17E-03
84GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.17E-03
85GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.17E-03
86GO:0006020: inositol metabolic process1.17E-03
87GO:0006107: oxaloacetate metabolic process1.17E-03
88GO:0006537: glutamate biosynthetic process1.17E-03
89GO:0009052: pentose-phosphate shunt, non-oxidative branch1.17E-03
90GO:0006145: purine nucleobase catabolic process1.17E-03
91GO:0006734: NADH metabolic process1.56E-03
92GO:0010021: amylopectin biosynthetic process1.56E-03
93GO:0019676: ammonia assimilation cycle1.56E-03
94GO:0006545: glycine biosynthetic process1.56E-03
95GO:0006109: regulation of carbohydrate metabolic process1.56E-03
96GO:0015994: chlorophyll metabolic process1.56E-03
97GO:0006662: glycerol ether metabolic process1.89E-03
98GO:0030041: actin filament polymerization1.99E-03
99GO:0016123: xanthophyll biosynthetic process1.99E-03
100GO:0016558: protein import into peroxisome matrix1.99E-03
101GO:0009643: photosynthetic acclimation2.45E-03
102GO:0050665: hydrogen peroxide biosynthetic process2.45E-03
103GO:0042549: photosystem II stabilization2.45E-03
104GO:0010264: myo-inositol hexakisphosphate biosynthetic process2.45E-03
105GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.45E-03
106GO:0010189: vitamin E biosynthetic process2.94E-03
107GO:0009854: oxidative photosynthetic carbon pathway2.94E-03
108GO:0071470: cellular response to osmotic stress2.94E-03
109GO:0009769: photosynthesis, light harvesting in photosystem II3.47E-03
110GO:0006400: tRNA modification3.47E-03
111GO:0051510: regulation of unidimensional cell growth3.47E-03
112GO:0009704: de-etiolation4.02E-03
113GO:0032508: DNA duplex unwinding4.02E-03
114GO:0016559: peroxisome fission4.02E-03
115GO:0006413: translational initiation4.05E-03
116GO:0016311: dephosphorylation4.16E-03
117GO:0007623: circadian rhythm4.43E-03
118GO:0032544: plastid translation4.60E-03
119GO:0017004: cytochrome complex assembly4.60E-03
120GO:0071482: cellular response to light stimulus4.60E-03
121GO:0010262: somatic embryogenesis4.60E-03
122GO:0006810: transport4.95E-03
123GO:0090333: regulation of stomatal closure5.22E-03
124GO:0006754: ATP biosynthetic process5.22E-03
125GO:0098656: anion transmembrane transport5.22E-03
126GO:0009821: alkaloid biosynthetic process5.22E-03
127GO:0006098: pentose-phosphate shunt5.22E-03
128GO:0009688: abscisic acid biosynthetic process6.51E-03
129GO:0006415: translational termination7.20E-03
130GO:0009658: chloroplast organization7.71E-03
131GO:0006108: malate metabolic process8.66E-03
132GO:0006006: glucose metabolic process8.66E-03
133GO:0055046: microgametogenesis8.66E-03
134GO:0009767: photosynthetic electron transport chain8.66E-03
135GO:0005986: sucrose biosynthetic process8.66E-03
136GO:0009416: response to light stimulus9.16E-03
137GO:0080167: response to karrikin1.01E-02
138GO:0090351: seedling development1.02E-02
139GO:0019853: L-ascorbic acid biosynthetic process1.02E-02
140GO:0006833: water transport1.10E-02
141GO:0006096: glycolytic process1.14E-02
142GO:0007010: cytoskeleton organization1.19E-02
143GO:0006825: copper ion transport1.27E-02
144GO:0051302: regulation of cell division1.27E-02
145GO:0008299: isoprenoid biosynthetic process1.27E-02
146GO:0045454: cell redox homeostasis1.28E-02
147GO:0055085: transmembrane transport1.31E-02
148GO:0009409: response to cold1.35E-02
149GO:0009269: response to desiccation1.36E-02
150GO:0006396: RNA processing1.42E-02
151GO:0009561: megagametogenesis1.64E-02
152GO:0009408: response to heat1.66E-02
153GO:0046686: response to cadmium ion1.72E-02
154GO:0034220: ion transmembrane transport1.83E-02
155GO:0006606: protein import into nucleus1.83E-02
156GO:0009845: seed germination1.87E-02
157GO:0010182: sugar mediated signaling pathway1.93E-02
158GO:0006814: sodium ion transport2.03E-02
159GO:0008654: phospholipid biosynthetic process2.14E-02
160GO:0009791: post-embryonic development2.14E-02
161GO:0000302: response to reactive oxygen species2.24E-02
162GO:0006635: fatty acid beta-oxidation2.24E-02
163GO:0048510: regulation of timing of transition from vegetative to reproductive phase2.24E-02
164GO:0016032: viral process2.35E-02
165GO:0051607: defense response to virus2.80E-02
166GO:0001666: response to hypoxia2.91E-02
167GO:0009735: response to cytokinin3.05E-02
168GO:0042128: nitrate assimilation3.15E-02
169GO:0009817: defense response to fungus, incompatible interaction3.52E-02
170GO:0006811: ion transport3.77E-02
171GO:0006499: N-terminal protein myristoylation3.77E-02
172GO:0009407: toxin catabolic process3.77E-02
173GO:0048527: lateral root development3.90E-02
174GO:0016051: carbohydrate biosynthetic process4.17E-02
175GO:0006099: tricarboxylic acid cycle4.30E-02
176GO:0005975: carbohydrate metabolic process4.82E-02
177GO:0042542: response to hydrogen peroxide4.85E-02
178GO:0009744: response to sucrose4.98E-02
RankGO TermAdjusted P value
1GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
2GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
3GO:0004760: serine-pyruvate transaminase activity0.00E+00
4GO:0015229: L-ascorbic acid transporter activity0.00E+00
5GO:0042623: ATPase activity, coupled0.00E+00
6GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
7GO:0003858: 3-hydroxybutyrate dehydrogenase activity0.00E+00
8GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity0.00E+00
9GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
10GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
11GO:0009540: zeaxanthin epoxidase [overall] activity0.00E+00
12GO:0050281: serine-glyoxylate transaminase activity0.00E+00
13GO:0004059: aralkylamine N-acetyltransferase activity0.00E+00
14GO:0043136: glycerol-3-phosphatase activity0.00E+00
15GO:0000121: glycerol-1-phosphatase activity0.00E+00
16GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
17GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
18GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
19GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
20GO:0045550: geranylgeranyl reductase activity0.00E+00
21GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
22GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
23GO:0016168: chlorophyll binding3.17E-08
24GO:0031409: pigment binding1.29E-06
25GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity1.59E-06
26GO:0052832: inositol monophosphate 3-phosphatase activity2.41E-06
27GO:0008934: inositol monophosphate 1-phosphatase activity2.41E-06
28GO:0052833: inositol monophosphate 4-phosphatase activity2.41E-06
29GO:0070402: NADPH binding8.79E-06
30GO:0046872: metal ion binding2.73E-05
31GO:0031072: heat shock protein binding2.90E-05
32GO:0008453: alanine-glyoxylate transaminase activity3.66E-05
33GO:0008080: N-acetyltransferase activity1.69E-04
34GO:1990190: peptide-glutamate-N-acetyltransferase activity2.27E-04
35GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity2.27E-04
36GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity2.27E-04
37GO:0008746: NAD(P)+ transhydrogenase activity2.27E-04
38GO:0016041: glutamate synthase (ferredoxin) activity2.27E-04
39GO:0010347: L-galactose-1-phosphate phosphatase activity2.27E-04
40GO:0035671: enone reductase activity2.27E-04
41GO:0004425: indole-3-glycerol-phosphate synthase activity2.27E-04
42GO:1990189: peptide-serine-N-acetyltransferase activity2.27E-04
43GO:0047958: glycine:2-oxoglutarate aminotransferase activity2.27E-04
44GO:0004813: alanine-tRNA ligase activity2.27E-04
45GO:0004008: copper-exporting ATPase activity2.27E-04
46GO:0008047: enzyme activator activity4.18E-04
47GO:0004826: phenylalanine-tRNA ligase activity5.05E-04
48GO:0004512: inositol-3-phosphate synthase activity5.05E-04
49GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity5.05E-04
50GO:0047746: chlorophyllase activity5.05E-04
51GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.05E-04
52GO:0004829: threonine-tRNA ligase activity5.05E-04
53GO:0019172: glyoxalase III activity5.05E-04
54GO:0019156: isoamylase activity5.05E-04
55GO:0000049: tRNA binding5.53E-04
56GO:0004148: dihydrolipoyl dehydrogenase activity8.21E-04
57GO:0004751: ribose-5-phosphate isomerase activity8.21E-04
58GO:0030267: glyoxylate reductase (NADP) activity8.21E-04
59GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor8.21E-04
60GO:0005528: FK506 binding9.67E-04
61GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity1.17E-03
62GO:0016149: translation release factor activity, codon specific1.17E-03
63GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity1.17E-03
64GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.17E-03
65GO:0016851: magnesium chelatase activity1.17E-03
66GO:0008508: bile acid:sodium symporter activity1.17E-03
67GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity1.17E-03
68GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity1.17E-03
69GO:0022891: substrate-specific transmembrane transporter activity1.38E-03
70GO:0043495: protein anchor1.56E-03
71GO:0008891: glycolate oxidase activity1.56E-03
72GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.56E-03
73GO:0009011: starch synthase activity1.56E-03
74GO:0047134: protein-disulfide reductase activity1.63E-03
75GO:0003785: actin monomer binding1.99E-03
76GO:0051538: 3 iron, 4 sulfur cluster binding1.99E-03
77GO:0004791: thioredoxin-disulfide reductase activity2.03E-03
78GO:0016853: isomerase activity2.03E-03
79GO:0051082: unfolded protein binding2.21E-03
80GO:0004556: alpha-amylase activity2.45E-03
81GO:0000293: ferric-chelate reductase activity2.45E-03
82GO:0004462: lactoylglutathione lyase activity2.45E-03
83GO:0042578: phosphoric ester hydrolase activity2.45E-03
84GO:0016615: malate dehydrogenase activity2.45E-03
85GO:2001070: starch binding2.45E-03
86GO:0004332: fructose-bisphosphate aldolase activity2.45E-03
87GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.65E-03
88GO:0030060: L-malate dehydrogenase activity2.94E-03
89GO:0004017: adenylate kinase activity2.94E-03
90GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity2.94E-03
91GO:0019899: enzyme binding3.47E-03
92GO:0004721: phosphoprotein phosphatase activity3.95E-03
93GO:0004033: aldo-keto reductase (NADP) activity4.02E-03
94GO:0005375: copper ion transmembrane transporter activity4.60E-03
95GO:0008135: translation factor activity, RNA binding4.60E-03
96GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism5.22E-03
97GO:0003747: translation release factor activity5.22E-03
98GO:0071949: FAD binding5.22E-03
99GO:0003746: translation elongation factor activity5.54E-03
100GO:0016844: strictosidine synthase activity5.85E-03
101GO:0042802: identical protein binding6.00E-03
102GO:0005198: structural molecule activity8.03E-03
103GO:0003755: peptidyl-prolyl cis-trans isomerase activity8.34E-03
104GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism8.66E-03
105GO:0005315: inorganic phosphate transmembrane transporter activity8.66E-03
106GO:0051287: NAD binding8.66E-03
107GO:0004857: enzyme inhibitor activity1.19E-02
108GO:0016491: oxidoreductase activity1.29E-02
109GO:0015035: protein disulfide oxidoreductase activity1.42E-02
110GO:0003727: single-stranded RNA binding1.64E-02
111GO:0008514: organic anion transmembrane transporter activity1.64E-02
112GO:0003756: protein disulfide isomerase activity1.64E-02
113GO:0003924: GTPase activity1.66E-02
114GO:0010181: FMN binding2.03E-02
115GO:0048038: quinone binding2.24E-02
116GO:0003743: translation initiation factor activity2.79E-02
117GO:0016597: amino acid binding2.80E-02
118GO:0016887: ATPase activity2.88E-02
119GO:0015250: water channel activity2.91E-02
120GO:0016787: hydrolase activity2.95E-02
121GO:0015238: drug transmembrane transporter activity3.65E-02
122GO:0030145: manganese ion binding3.90E-02
123GO:0050897: cobalt ion binding3.90E-02
124GO:0003993: acid phosphatase activity4.30E-02
125GO:0050661: NADP binding4.57E-02
126GO:0004364: glutathione transferase activity4.85E-02
RankGO TermAdjusted P value
1GO:0010368: chloroplast isoamylase complex0.00E+00
2GO:0009515: granal stacked thylakoid0.00E+00
3GO:0009507: chloroplast1.39E-64
4GO:0009535: chloroplast thylakoid membrane1.36E-42
5GO:0009534: chloroplast thylakoid2.19E-29
6GO:0009570: chloroplast stroma2.66E-27
7GO:0009941: chloroplast envelope1.16E-23
8GO:0009579: thylakoid6.78E-18
9GO:0009543: chloroplast thylakoid lumen4.17E-13
10GO:0031977: thylakoid lumen4.44E-12
11GO:0009523: photosystem II2.97E-07
12GO:0010287: plastoglobule3.90E-06
13GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)8.05E-06
14GO:0030076: light-harvesting complex4.28E-05
15GO:0009654: photosystem II oxygen evolving complex7.03E-05
16GO:0048046: apoplast1.46E-04
17GO:0009522: photosystem I1.88E-04
18GO:0019898: extrinsic component of membrane2.07E-04
19GO:0009782: photosystem I antenna complex2.27E-04
20GO:0031969: chloroplast membrane4.27E-04
21GO:0031415: NatA complex5.05E-04
22GO:0005759: mitochondrial matrix6.88E-04
23GO:0030095: chloroplast photosystem II7.06E-04
24GO:0010007: magnesium chelatase complex8.21E-04
25GO:0042651: thylakoid membrane1.06E-03
26GO:0009517: PSII associated light-harvesting complex II1.56E-03
27GO:0009707: chloroplast outer membrane4.38E-03
28GO:0016020: membrane4.46E-03
29GO:0032040: small-subunit processome7.92E-03
30GO:0005938: cell cortex8.66E-03
31GO:0016602: CCAAT-binding factor complex8.66E-03
32GO:0005777: peroxisome1.13E-02
33GO:0009706: chloroplast inner membrane1.38E-02
34GO:0015629: actin cytoskeleton1.54E-02
35GO:0005623: cell1.77E-02
36GO:0005778: peroxisomal membrane2.68E-02
37GO:0010319: stromule2.68E-02
38GO:0022626: cytosolic ribosome3.23E-02
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Gene type



Gene DE type