co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G15970

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
2	GO:0015717: triose phosphate transport	0.00E+00
3	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
4	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
5	GO:0002184: cytoplasmic translational termination	0.00E+00
6	GO:0030155: regulation of cell adhesion	0.00E+00
7	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
8	GO:0005996: monosaccharide metabolic process	0.00E+00
9	GO:0015979: photosynthesis	3.59E-13
10	GO:0009773: photosynthetic electron transport in photosystem I	9.94E-11
11	GO:0009735: response to cytokinin	1.01E-07
12	GO:0032544: plastid translation	1.57E-07
13	GO:0030388: fructose 1,6-bisphosphate metabolic process	4.35E-06
14	GO:0061077: chaperone-mediated protein folding	6.73E-06
15	GO:0006000: fructose metabolic process	1.55E-05
16	GO:0010206: photosystem II repair	1.70E-05
17	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	3.45E-05
18	GO:0010021: amylopectin biosynthetic process	6.18E-05
19	GO:0015976: carbon utilization	6.18E-05
20	GO:0006109: regulation of carbohydrate metabolic process	6.18E-05
21	GO:0010027: thylakoid membrane organization	6.26E-05
22	GO:0015995: chlorophyll biosynthetic process	8.53E-05
23	GO:0006412: translation	8.82E-05
24	GO:0009409: response to cold	8.91E-05
25	GO:0042742: defense response to bacterium	1.41E-04
26	GO:1901259: chloroplast rRNA processing	1.93E-04
27	GO:0080093: regulation of photorespiration	3.09E-04
28	GO:0043007: maintenance of rDNA	3.09E-04
29	GO:0031998: regulation of fatty acid beta-oxidation	3.09E-04
30	GO:0034337: RNA folding	3.09E-04
31	GO:0000023: maltose metabolic process	3.09E-04
32	GO:0006431: methionyl-tRNA aminoacylation	3.09E-04
33	GO:0000025: maltose catabolic process	3.09E-04
34	GO:0005980: glycogen catabolic process	3.09E-04
35	GO:0005978: glycogen biosynthetic process	3.17E-04
36	GO:0019252: starch biosynthetic process	3.77E-04
37	GO:0055114: oxidation-reduction process	3.78E-04
38	GO:0006002: fructose 6-phosphate metabolic process	3.89E-04
39	GO:0010205: photoinhibition	5.53E-04
40	GO:0009658: chloroplast organization	6.51E-04
41	GO:0042254: ribosome biogenesis	6.73E-04
42	GO:0018026: peptidyl-lysine monomethylation	6.76E-04
43	GO:0090342: regulation of cell aging	6.76E-04
44	GO:0097054: L-glutamate biosynthetic process	6.76E-04
45	GO:0031648: protein destabilization	6.76E-04
46	GO:0035304: regulation of protein dephosphorylation	6.76E-04
47	GO:0005976: polysaccharide metabolic process	6.76E-04
48	GO:0043085: positive regulation of catalytic activity	7.44E-04
49	GO:0005983: starch catabolic process	8.50E-04
50	GO:0006094: gluconeogenesis	9.61E-04
51	GO:0005986: sucrose biosynthetic process	9.61E-04
52	GO:0006518: peptide metabolic process	1.10E-03
53	GO:0035436: triose phosphate transmembrane transport	1.10E-03
54	GO:0016050: vesicle organization	1.10E-03
55	GO:0048281: inflorescence morphogenesis	1.10E-03
56	GO:0034599: cellular response to oxidative stress	1.31E-03
57	GO:0006810: transport	1.34E-03
58	GO:0010148: transpiration	1.57E-03
59	GO:1902358: sulfate transmembrane transport	1.57E-03
60	GO:0006537: glutamate biosynthetic process	1.57E-03
61	GO:0010731: protein glutathionylation	1.57E-03
62	GO:0051205: protein insertion into membrane	2.11E-03
63	GO:0015713: phosphoglycerate transport	2.11E-03
64	GO:0010037: response to carbon dioxide	2.11E-03
65	GO:0006808: regulation of nitrogen utilization	2.11E-03
66	GO:0019676: ammonia assimilation cycle	2.11E-03
67	GO:0051322: anaphase	2.11E-03
68	GO:0019464: glycine decarboxylation via glycine cleavage system	2.11E-03
69	GO:0045727: positive regulation of translation	2.11E-03
70	GO:2000122: negative regulation of stomatal complex development	2.11E-03
71	GO:0010600: regulation of auxin biosynthetic process	2.11E-03
72	GO:0006552: leucine catabolic process	2.11E-03
73	GO:0006546: glycine catabolic process	2.11E-03
74	GO:0016117: carotenoid biosynthetic process	2.53E-03
75	GO:0016120: carotene biosynthetic process	2.69E-03
76	GO:0045038: protein import into chloroplast thylakoid membrane	2.69E-03
77	GO:0006097: glyoxylate cycle	2.69E-03
78	GO:0006461: protein complex assembly	2.69E-03
79	GO:0016123: xanthophyll biosynthetic process	2.69E-03
80	GO:0006662: glycerol ether metabolic process	2.94E-03
81	GO:0009643: photosynthetic acclimation	3.32E-03
82	GO:0010304: PSII associated light-harvesting complex II catabolic process	3.32E-03
83	GO:0042549: photosystem II stabilization	3.32E-03
84	GO:0000470: maturation of LSU-rRNA	3.32E-03
85	GO:0010190: cytochrome b6f complex assembly	3.32E-03
86	GO:0006458: 'de novo' protein folding	4.00E-03
87	GO:0009955: adaxial/abaxial pattern specification	4.00E-03
88	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	4.00E-03
89	GO:0042026: protein refolding	4.00E-03
90	GO:0008272: sulfate transport	4.72E-03
91	GO:0009645: response to low light intensity stimulus	4.72E-03
92	GO:0022904: respiratory electron transport chain	4.72E-03
93	GO:0010103: stomatal complex morphogenesis	4.72E-03
94	GO:0010161: red light signaling pathway	4.72E-03
95	GO:0071446: cellular response to salicylic acid stimulus	4.72E-03
96	GO:0010196: nonphotochemical quenching	4.72E-03
97	GO:0070370: cellular heat acclimation	4.72E-03
98	GO:0009704: de-etiolation	5.48E-03
99	GO:0010928: regulation of auxin mediated signaling pathway	5.48E-03
100	GO:0009642: response to light intensity	5.48E-03
101	GO:0045454: cell redox homeostasis	5.54E-03
102	GO:0009657: plastid organization	6.28E-03
103	GO:2000031: regulation of salicylic acid mediated signaling pathway	6.28E-03
104	GO:0015996: chlorophyll catabolic process	6.28E-03
105	GO:0001558: regulation of cell growth	6.28E-03
106	GO:0009817: defense response to fungus, incompatible interaction	6.85E-03
107	GO:0006783: heme biosynthetic process	7.12E-03
108	GO:0051865: protein autoubiquitination	7.12E-03
109	GO:0005982: starch metabolic process	8.01E-03
110	GO:0042761: very long-chain fatty acid biosynthetic process	8.01E-03
111	GO:0048829: root cap development	8.92E-03
112	GO:0031627: telomeric loop formation	8.92E-03
113	GO:0006782: protoporphyrinogen IX biosynthetic process	8.92E-03
114	GO:0006415: translational termination	9.88E-03
115	GO:0000272: polysaccharide catabolic process	9.88E-03
116	GO:0009750: response to fructose	9.88E-03
117	GO:0018119: peptidyl-cysteine S-nitrosylation	9.88E-03
118	GO:0019684: photosynthesis, light reaction	9.88E-03
119	GO:0009073: aromatic amino acid family biosynthetic process	9.88E-03
120	GO:0045037: protein import into chloroplast stroma	1.09E-02
121	GO:0010102: lateral root morphogenesis	1.19E-02
122	GO:0010628: positive regulation of gene expression	1.19E-02
123	GO:0006108: malate metabolic process	1.19E-02
124	GO:0009767: photosynthetic electron transport chain	1.19E-02
125	GO:0019253: reductive pentose-phosphate cycle	1.30E-02
126	GO:0009266: response to temperature stimulus	1.30E-02
127	GO:0006302: double-strand break repair	1.30E-02
128	GO:0010207: photosystem II assembly	1.30E-02
129	GO:0010020: chloroplast fission	1.30E-02
130	GO:0005985: sucrose metabolic process	1.40E-02
131	GO:0006636: unsaturated fatty acid biosynthetic process	1.52E-02
132	GO:0010025: wax biosynthetic process	1.52E-02
133	GO:0006289: nucleotide-excision repair	1.63E-02
134	GO:0009944: polarity specification of adaxial/abaxial axis	1.63E-02
135	GO:0007017: microtubule-based process	1.75E-02
136	GO:0009768: photosynthesis, light harvesting in photosystem I	1.75E-02
137	GO:0051302: regulation of cell division	1.75E-02
138	GO:0006418: tRNA aminoacylation for protein translation	1.75E-02
139	GO:0006979: response to oxidative stress	1.77E-02
140	GO:0043086: negative regulation of catalytic activity	1.80E-02
141	GO:0019915: lipid storage	1.87E-02
142	GO:0051321: meiotic cell cycle	1.87E-02
143	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.00E-02
144	GO:0035428: hexose transmembrane transport	2.00E-02
145	GO:0010017: red or far-red light signaling pathway	2.00E-02
146	GO:0016226: iron-sulfur cluster assembly	2.00E-02
147	GO:0001944: vasculature development	2.12E-02
148	GO:0009686: gibberellin biosynthetic process	2.12E-02
149	GO:0042335: cuticle development	2.52E-02
150	GO:0042631: cellular response to water deprivation	2.52E-02
151	GO:0046323: glucose import	2.66E-02
152	GO:0009646: response to absence of light	2.80E-02
153	GO:0000302: response to reactive oxygen species	3.09E-02
154	GO:0071554: cell wall organization or biogenesis	3.09E-02
155	GO:0009790: embryo development	3.16E-02
156	GO:0008152: metabolic process	3.31E-02
157	GO:0071281: cellular response to iron ion	3.39E-02
158	GO:1901657: glycosyl compound metabolic process	3.39E-02
159	GO:0030163: protein catabolic process	3.39E-02
160	GO:0007623: circadian rhythm	3.74E-02
161	GO:0000910: cytokinesis	3.86E-02
162	GO:0016311: dephosphorylation	4.68E-02
163	GO:0018298: protein-chromophore linkage	4.85E-02
164	GO:0048481: plant ovule development	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
2	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
3	GO:0048039: ubiquinone binding	0.00E+00
4	GO:0009899: ent-kaurene synthase activity	0.00E+00
5	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
6	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
7	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
8	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
9	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
10	GO:0016166: phytoene dehydrogenase activity	0.00E+00
11	GO:0019843: rRNA binding	4.97E-12
12	GO:0010297: heteropolysaccharide binding	4.35E-06
13	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.35E-06
14	GO:0003735: structural constituent of ribosome	1.93E-05
15	GO:0016851: magnesium chelatase activity	3.45E-05
16	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	6.18E-05
17	GO:0004853: uroporphyrinogen decarboxylase activity	3.09E-04
18	GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity	3.09E-04
19	GO:0034256: chlorophyll(ide) b reductase activity	3.09E-04
20	GO:0045485: omega-6 fatty acid desaturase activity	3.09E-04
21	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.09E-04
22	GO:0004825: methionine-tRNA ligase activity	3.09E-04
23	GO:0016041: glutamate synthase (ferredoxin) activity	3.09E-04
24	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	3.09E-04
25	GO:0008184: glycogen phosphorylase activity	3.09E-04
26	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	3.09E-04
27	GO:0010242: oxygen evolving activity	3.09E-04
28	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	3.09E-04
29	GO:0004134: 4-alpha-glucanotransferase activity	3.09E-04
30	GO:0004645: phosphorylase activity	3.09E-04
31	GO:0016491: oxidoreductase activity	3.18E-04
32	GO:0048038: quinone binding	4.12E-04
33	GO:0008047: enzyme activator activity	6.45E-04
34	GO:0008967: phosphoglycolate phosphatase activity	6.76E-04
35	GO:0010291: carotene beta-ring hydroxylase activity	6.76E-04
36	GO:0016868: intramolecular transferase activity, phosphotransferases	6.76E-04
37	GO:0033201: alpha-1,4-glucan synthase activity	6.76E-04
38	GO:0003844: 1,4-alpha-glucan branching enzyme activity	6.76E-04
39	GO:0044183: protein binding involved in protein folding	7.44E-04
40	GO:0004089: carbonate dehydratase activity	9.61E-04
41	GO:0008266: poly(U) RNA binding	1.08E-03
42	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.10E-03
43	GO:0071917: triose-phosphate transmembrane transporter activity	1.10E-03
44	GO:0004324: ferredoxin-NADP+ reductase activity	1.10E-03
45	GO:0043169: cation binding	1.10E-03
46	GO:0004373: glycogen (starch) synthase activity	1.10E-03
47	GO:0017150: tRNA dihydrouridine synthase activity	1.10E-03
48	GO:0004857: enzyme inhibitor activity	1.49E-03
49	GO:0005528: FK506 binding	1.49E-03
50	GO:0016149: translation release factor activity, codon specific	1.57E-03
51	GO:0043023: ribosomal large subunit binding	1.57E-03
52	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.57E-03
53	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.57E-03
54	GO:0008878: glucose-1-phosphate adenylyltransferase activity	2.11E-03
55	GO:0042277: peptide binding	2.11E-03
56	GO:0015120: phosphoglycerate transmembrane transporter activity	2.11E-03
57	GO:0016279: protein-lysine N-methyltransferase activity	2.11E-03
58	GO:0009011: starch synthase activity	2.11E-03
59	GO:0019199: transmembrane receptor protein kinase activity	2.11E-03
60	GO:0047134: protein-disulfide reductase activity	2.53E-03
61	GO:0004040: amidase activity	2.69E-03
62	GO:0051538: 3 iron, 4 sulfur cluster binding	2.69E-03
63	GO:0003959: NADPH dehydrogenase activity	2.69E-03
64	GO:0050662: coenzyme binding	3.16E-03
65	GO:0004791: thioredoxin-disulfide reductase activity	3.16E-03
66	GO:0016615: malate dehydrogenase activity	3.32E-03
67	GO:2001070: starch binding	3.32E-03
68	GO:0004130: cytochrome-c peroxidase activity	3.32E-03
69	GO:0030060: L-malate dehydrogenase activity	4.00E-03
70	GO:0004602: glutathione peroxidase activity	4.00E-03
71	GO:0051920: peroxiredoxin activity	4.00E-03
72	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	4.00E-03
73	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.14E-03
74	GO:0004033: aldo-keto reductase (NADP) activity	5.48E-03
75	GO:0005337: nucleoside transmembrane transporter activity	5.48E-03
76	GO:0016209: antioxidant activity	5.48E-03
77	GO:0004252: serine-type endopeptidase activity	5.94E-03
78	GO:0008271: secondary active sulfate transmembrane transporter activity	6.28E-03
79	GO:0008236: serine-type peptidase activity	6.51E-03
80	GO:0003747: translation release factor activity	7.12E-03
81	GO:0004222: metalloendopeptidase activity	7.56E-03
82	GO:0047372: acylglycerol lipase activity	9.88E-03
83	GO:0003691: double-stranded telomeric DNA binding	9.88E-03
84	GO:0015116: sulfate transmembrane transporter activity	1.09E-02
85	GO:0004022: alcohol dehydrogenase (NAD) activity	1.19E-02
86	GO:0031072: heat shock protein binding	1.19E-02
87	GO:0004565: beta-galactosidase activity	1.19E-02
88	GO:0051537: 2 iron, 2 sulfur cluster binding	1.22E-02
89	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.31E-02
90	GO:0031409: pigment binding	1.52E-02
91	GO:0051536: iron-sulfur cluster binding	1.63E-02
92	GO:0008408: 3'-5' exonuclease activity	1.87E-02
93	GO:0022891: substrate-specific transmembrane transporter activity	2.12E-02
94	GO:0051082: unfolded protein binding	2.16E-02
95	GO:0015035: protein disulfide oxidoreductase activity	2.23E-02
96	GO:0003756: protein disulfide isomerase activity	2.25E-02
97	GO:0004812: aminoacyl-tRNA ligase activity	2.39E-02
98	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.79E-02
99	GO:0005355: glucose transmembrane transporter activity	2.80E-02
100	GO:0009055: electron carrier activity	3.20E-02
101	GO:0008237: metallopeptidase activity	3.70E-02
102	GO:0005200: structural constituent of cytoskeleton	3.70E-02
103	GO:0016413: O-acetyltransferase activity	3.86E-02
104	GO:0016168: chlorophyll binding	4.18E-02
105	GO:0102483: scopolin beta-glucosidase activity	4.51E-02
106	GO:0005509: calcium ion binding	4.52E-02
107	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0042579: microbody	0.00E+00
2	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
3	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
4	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
5	GO:0009507: chloroplast	3.51E-73
6	GO:0009570: chloroplast stroma	1.68E-50
7	GO:0009534: chloroplast thylakoid	3.59E-45
8	GO:0009535: chloroplast thylakoid membrane	1.65E-42
9	GO:0009941: chloroplast envelope	7.77E-41
10	GO:0009579: thylakoid	5.54E-24
11	GO:0031977: thylakoid lumen	1.93E-14
12	GO:0009543: chloroplast thylakoid lumen	1.68E-13
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.31E-09
14	GO:0005840: ribosome	1.18E-08
15	GO:0010287: plastoglobule	5.28E-08
16	GO:0009508: plastid chromosome	1.53E-06
17	GO:0030095: chloroplast photosystem II	2.04E-06
18	GO:0010319: stromule	2.36E-06
19	GO:0009295: nucleoid	2.36E-06
20	GO:0009654: photosystem II oxygen evolving complex	5.45E-06
21	GO:0009538: photosystem I reaction center	8.51E-06
22	GO:0009706: chloroplast inner membrane	8.69E-06
23	GO:0010007: magnesium chelatase complex	1.55E-05
24	GO:0019898: extrinsic component of membrane	2.64E-05
25	GO:0048046: apoplast	6.50E-05
26	GO:0009533: chloroplast stromal thylakoid	2.51E-04
27	GO:0009782: photosystem I antenna complex	3.09E-04
28	GO:0000791: euchromatin	3.09E-04
29	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	3.09E-04
30	GO:0009501: amyloplast	3.17E-04
31	GO:0030870: Mre11 complex	6.76E-04
32	GO:0000427: plastid-encoded plastid RNA polymerase complex	6.76E-04
33	GO:0030093: chloroplast photosystem I	6.76E-04
34	GO:0009509: chromoplast	1.10E-03
35	GO:0016020: membrane	1.26E-03
36	GO:0005960: glycine cleavage complex	1.57E-03
37	GO:0042651: thylakoid membrane	1.64E-03
38	GO:0055035: plastid thylakoid membrane	2.69E-03
39	GO:0000795: synaptonemal complex	2.69E-03
40	GO:0009536: plastid	2.76E-03
41	GO:0031969: chloroplast membrane	4.21E-03
42	GO:0031305: integral component of mitochondrial inner membrane	5.48E-03
43	GO:0000783: nuclear telomere cap complex	6.28E-03
44	GO:0042644: chloroplast nucleoid	7.12E-03
45	GO:0045298: tubulin complex	7.12E-03
46	GO:0005763: mitochondrial small ribosomal subunit	7.12E-03
47	GO:0005740: mitochondrial envelope	8.92E-03
48	GO:0032040: small-subunit processome	1.09E-02
49	GO:0009574: preprophase band	1.19E-02
50	GO:0030076: light-harvesting complex	1.40E-02
51	GO:0015935: small ribosomal subunit	1.87E-02
52	GO:0005623: cell	2.79E-02
53	GO:0009522: photosystem I	2.80E-02
54	GO:0009523: photosystem II	2.95E-02
55	GO:0000785: chromatin	3.24E-02