Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G15740

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009583: detection of light stimulus0.00E+00
2GO:0048856: anatomical structure development0.00E+00
3GO:0071000: response to magnetism0.00E+00
4GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine0.00E+00
5GO:0016576: histone dephosphorylation0.00E+00
6GO:0010343: singlet oxygen-mediated programmed cell death1.11E-07
7GO:0072387: flavin adenine dinucleotide metabolic process4.18E-05
8GO:0048438: floral whorl development4.18E-05
9GO:0071266: 'de novo' L-methionine biosynthetic process4.18E-05
10GO:0019346: transsulfuration4.18E-05
11GO:0019343: cysteine biosynthetic process via cystathionine4.18E-05
12GO:0099402: plant organ development1.04E-04
13GO:0035335: peptidyl-tyrosine dephosphorylation1.04E-04
14GO:1901529: positive regulation of anion channel activity1.04E-04
15GO:0046373: L-arabinose metabolic process1.04E-04
16GO:0010617: circadian regulation of calcium ion oscillation1.04E-04
17GO:0071836: nectar secretion1.78E-04
18GO:0045493: xylan catabolic process1.78E-04
19GO:0045739: positive regulation of DNA repair1.78E-04
20GO:1902448: positive regulation of shade avoidance1.78E-04
21GO:1901672: positive regulation of systemic acquired resistance1.78E-04
22GO:0046653: tetrahydrofolate metabolic process2.63E-04
23GO:1901332: negative regulation of lateral root development2.63E-04
24GO:0031935: regulation of chromatin silencing3.53E-04
25GO:1902347: response to strigolactone3.53E-04
26GO:0007094: mitotic spindle assembly checkpoint4.50E-04
27GO:0000304: response to singlet oxygen4.50E-04
28GO:0010117: photoprotection4.50E-04
29GO:0046283: anthocyanin-containing compound metabolic process4.50E-04
30GO:0010304: PSII associated light-harvesting complex II catabolic process5.51E-04
31GO:1901371: regulation of leaf morphogenesis5.51E-04
32GO:0000741: karyogamy5.51E-04
33GO:0060918: auxin transport5.51E-04
34GO:0010310: regulation of hydrogen peroxide metabolic process6.58E-04
35GO:0010244: response to low fluence blue light stimulus by blue low-fluence system6.58E-04
36GO:0010076: maintenance of floral meristem identity6.58E-04
37GO:0010016: shoot system morphogenesis6.58E-04
38GO:0051510: regulation of unidimensional cell growth7.69E-04
39GO:0080111: DNA demethylation7.69E-04
40GO:0009396: folic acid-containing compound biosynthetic process7.69E-04
41GO:0044030: regulation of DNA methylation1.00E-03
42GO:0008356: asymmetric cell division1.25E-03
43GO:1900426: positive regulation of defense response to bacterium1.25E-03
44GO:0009638: phototropism1.25E-03
45GO:0035999: tetrahydrofolate interconversion1.25E-03
46GO:0010582: floral meristem determinacy1.67E-03
47GO:0010075: regulation of meristem growth1.82E-03
48GO:0009767: photosynthetic electron transport chain1.82E-03
49GO:0005986: sucrose biosynthetic process1.82E-03
50GO:0009785: blue light signaling pathway1.82E-03
51GO:0009266: response to temperature stimulus1.97E-03
52GO:2000377: regulation of reactive oxygen species metabolic process2.46E-03
53GO:0007017: microtubule-based process2.62E-03
54GO:0006470: protein dephosphorylation2.76E-03
55GO:0006730: one-carbon metabolic process2.97E-03
56GO:0010214: seed coat development3.33E-03
57GO:0010051: xylem and phloem pattern formation3.71E-03
58GO:0010087: phloem or xylem histogenesis3.71E-03
59GO:0010118: stomatal movement3.71E-03
60GO:0010197: polar nucleus fusion3.91E-03
61GO:0042752: regulation of circadian rhythm4.11E-03
62GO:0009646: response to absence of light4.11E-03
63GO:0006508: proteolysis4.39E-03
64GO:0016579: protein deubiquitination5.59E-03
65GO:0006974: cellular response to DNA damage stimulus6.27E-03
66GO:0032259: methylation6.50E-03
67GO:0018298: protein-chromophore linkage6.98E-03
68GO:0010218: response to far red light7.47E-03
69GO:0006811: ion transport7.47E-03
70GO:0009910: negative regulation of flower development7.72E-03
71GO:0009637: response to blue light8.23E-03
72GO:0009853: photorespiration8.23E-03
73GO:0006897: endocytosis9.28E-03
74GO:0010114: response to red light9.82E-03
75GO:0009640: photomorphogenesis9.82E-03
76GO:0009644: response to high light intensity1.04E-02
77GO:0009965: leaf morphogenesis1.07E-02
78GO:0000165: MAPK cascade1.12E-02
79GO:0010224: response to UV-B1.24E-02
80GO:0048367: shoot system development1.39E-02
81GO:0007623: circadian rhythm2.29E-02
82GO:0006351: transcription, DNA-templated2.41E-02
83GO:0030154: cell differentiation2.67E-02
84GO:0045944: positive regulation of transcription from RNA polymerase II promoter2.96E-02
85GO:0048366: leaf development3.52E-02
86GO:0005975: carbohydrate metabolic process3.71E-02
87GO:0046777: protein autophosphorylation3.83E-02
88GO:0045892: negative regulation of transcription, DNA-templated4.19E-02
89GO:0016042: lipid catabolic process4.71E-02
90GO:0006281: DNA repair4.81E-02
91GO:0006629: lipid metabolic process4.81E-02
92GO:0009408: response to heat4.81E-02
93GO:0048364: root development4.96E-02
RankGO TermAdjusted P value
1GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity0.00E+00
2GO:0030946: protein tyrosine phosphatase activity, metal-dependent0.00E+00
3GO:0046556: alpha-L-arabinofuranosidase activity2.02E-06
4GO:0004123: cystathionine gamma-lyase activity4.18E-05
5GO:0004121: cystathionine beta-lyase activity4.18E-05
6GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity1.04E-04
7GO:0004477: methenyltetrahydrofolate cyclohydrolase activity1.04E-04
8GO:0004176: ATP-dependent peptidase activity1.19E-04
9GO:0004180: carboxypeptidase activity1.78E-04
10GO:0046524: sucrose-phosphate synthase activity1.78E-04
11GO:0004848: ureidoglycolate hydrolase activity1.78E-04
12GO:0003962: cystathionine gamma-synthase activity1.78E-04
13GO:0000900: translation repressor activity, nucleic acid binding1.78E-04
14GO:0009882: blue light photoreceptor activity2.63E-04
15GO:0008237: metallopeptidase activity3.27E-04
16GO:0009044: xylan 1,4-beta-xylosidase activity3.53E-04
17GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor3.53E-04
18GO:0004806: triglyceride lipase activity4.32E-04
19GO:0004222: metalloendopeptidase activity5.25E-04
20GO:0000293: ferric-chelate reductase activity5.51E-04
21GO:0016157: sucrose synthase activity6.58E-04
22GO:0071949: FAD binding1.13E-03
23GO:0001055: RNA polymerase II activity1.25E-03
24GO:0001054: RNA polymerase I activity1.53E-03
25GO:0016887: ATPase activity1.57E-03
26GO:0001056: RNA polymerase III activity1.67E-03
27GO:0008168: methyltransferase activity3.59E-03
28GO:0004843: thiol-dependent ubiquitin-specific protease activity4.51E-03
29GO:0003677: DNA binding4.83E-03
30GO:0016798: hydrolase activity, acting on glycosyl bonds6.50E-03
31GO:0008236: serine-type peptidase activity6.74E-03
32GO:0005096: GTPase activator activity7.22E-03
33GO:0004712: protein serine/threonine/tyrosine kinase activity8.75E-03
34GO:0046872: metal ion binding9.83E-03
35GO:0035091: phosphatidylinositol binding1.04E-02
36GO:0051287: NAD binding1.12E-02
37GO:0016787: hydrolase activity1.20E-02
38GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.21E-02
39GO:0003777: microtubule motor activity1.30E-02
40GO:0022857: transmembrane transporter activity1.49E-02
41GO:0051082: unfolded protein binding1.55E-02
42GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.60E-02
43GO:0030170: pyridoxal phosphate binding1.96E-02
44GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding2.00E-02
45GO:0003824: catalytic activity2.69E-02
46GO:0042802: identical protein binding2.72E-02
47GO:0016491: oxidoreductase activity3.23E-02
48GO:0046983: protein dimerization activity3.27E-02
49GO:0008233: peptidase activity3.60E-02
50GO:0042803: protein homodimerization activity4.29E-02
51GO:0004722: protein serine/threonine phosphatase activity4.43E-02
RankGO TermAdjusted P value
1GO:0005578: proteinaceous extracellular matrix5.70E-05
2GO:0005875: microtubule associated complex8.51E-05
3GO:0016605: PML body1.78E-04
4GO:0030286: dynein complex3.53E-04
5GO:0030140: trans-Golgi network transport vesicle5.51E-04
6GO:0000123: histone acetyltransferase complex7.69E-04
7GO:0016604: nuclear body1.25E-03
8GO:0000419: DNA-directed RNA polymerase V complex2.29E-03
9GO:0042651: thylakoid membrane2.62E-03
10GO:0019005: SCF ubiquitin ligase complex6.98E-03
11GO:0005773: vacuole1.01E-02
12GO:0031966: mitochondrial membrane1.15E-02
13GO:0009506: plasmodesma1.25E-02
14GO:0005759: mitochondrial matrix2.14E-02
15GO:0005615: extracellular space2.48E-02
16GO:0005829: cytosol2.66E-02
17GO:0009505: plant-type cell wall3.07E-02
18GO:0031969: chloroplast membrane3.65E-02
19GO:0009507: chloroplast3.71E-02
20GO:0005743: mitochondrial inner membrane4.57E-02
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Gene type



Gene DE type