Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G14345

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009249: protein lipoylation0.00E+00
2GO:0015871: choline transport0.00E+00
3GO:0010423: negative regulation of brassinosteroid biosynthetic process0.00E+00
4GO:0071000: response to magnetism0.00E+00
5GO:0046460: neutral lipid biosynthetic process0.00E+00
6GO:0009583: detection of light stimulus0.00E+00
7GO:0090470: shoot organ boundary specification0.00E+00
8GO:0016576: histone dephosphorylation0.00E+00
9GO:0046294: formaldehyde catabolic process0.00E+00
10GO:0018316: peptide cross-linking via L-cystine0.00E+00
11GO:0009106: lipoate metabolic process0.00E+00
12GO:0097164: ammonium ion metabolic process0.00E+00
13GO:0036172: thiamine salvage0.00E+00
14GO:0048856: anatomical structure development0.00E+00
15GO:0006907: pinocytosis0.00E+00
16GO:0010343: singlet oxygen-mediated programmed cell death6.59E-06
17GO:0009902: chloroplast relocation8.90E-05
18GO:0046283: anthocyanin-containing compound metabolic process1.39E-04
19GO:0009658: chloroplast organization2.45E-04
20GO:0080065: 4-alpha-methyl-delta7-sterol oxidation3.84E-04
21GO:0034970: histone H3-R2 methylation3.84E-04
22GO:0010362: negative regulation of anion channel activity by blue light3.84E-04
23GO:0034972: histone H3-R26 methylation3.84E-04
24GO:1902265: abscisic acid homeostasis3.84E-04
25GO:0034971: histone H3-R17 methylation3.84E-04
26GO:0072387: flavin adenine dinucleotide metabolic process3.84E-04
27GO:0042371: vitamin K biosynthetic process3.84E-04
28GO:0071454: cellular response to anoxia3.84E-04
29GO:0071461: cellular response to redox state3.84E-04
30GO:0048564: photosystem I assembly4.35E-04
31GO:0022900: electron transport chain5.32E-04
32GO:0009638: phototropism7.52E-04
33GO:0009098: leucine biosynthetic process7.52E-04
34GO:0010275: NAD(P)H dehydrogenase complex assembly8.33E-04
35GO:1901529: positive regulation of anion channel activity8.33E-04
36GO:0080005: photosystem stoichiometry adjustment8.33E-04
37GO:0060359: response to ammonium ion8.33E-04
38GO:0048255: mRNA stabilization8.33E-04
39GO:0010617: circadian regulation of calcium ion oscillation8.33E-04
40GO:0070981: L-asparagine biosynthetic process8.33E-04
41GO:0007154: cell communication8.33E-04
42GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation8.33E-04
43GO:0044419: interspecies interaction between organisms8.33E-04
44GO:0099402: plant organ development8.33E-04
45GO:0090603: sieve element differentiation8.33E-04
46GO:0035335: peptidyl-tyrosine dephosphorylation8.33E-04
47GO:0006529: asparagine biosynthetic process8.33E-04
48GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine8.33E-04
49GO:0080153: negative regulation of reductive pentose-phosphate cycle8.33E-04
50GO:0045036: protein targeting to chloroplast8.76E-04
51GO:0016126: sterol biosynthetic process9.84E-04
52GO:0009767: photosynthetic electron transport chain1.31E-03
53GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation1.35E-03
54GO:0009663: plasmodesma organization1.35E-03
55GO:0031022: nuclear migration along microfilament1.35E-03
56GO:1902448: positive regulation of shade avoidance1.35E-03
57GO:0009150: purine ribonucleotide metabolic process1.35E-03
58GO:1901672: positive regulation of systemic acquired resistance1.35E-03
59GO:0071492: cellular response to UV-A1.35E-03
60GO:0006696: ergosterol biosynthetic process1.35E-03
61GO:0044375: regulation of peroxisome size1.35E-03
62GO:0045739: positive regulation of DNA repair1.35E-03
63GO:0043157: response to cation stress1.35E-03
64GO:0010207: photosystem II assembly1.47E-03
65GO:0009637: response to blue light1.85E-03
66GO:0009647: skotomorphogenesis1.95E-03
67GO:0033014: tetrapyrrole biosynthetic process1.95E-03
68GO:0009399: nitrogen fixation1.95E-03
69GO:1901332: negative regulation of lateral root development1.95E-03
70GO:0009963: positive regulation of flavonoid biosynthetic process1.95E-03
71GO:0010088: phloem development1.95E-03
72GO:0006882: cellular zinc ion homeostasis1.95E-03
73GO:2001141: regulation of RNA biosynthetic process1.95E-03
74GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.95E-03
75GO:0010371: regulation of gibberellin biosynthetic process1.95E-03
76GO:1902476: chloride transmembrane transport1.95E-03
77GO:0007623: circadian rhythm2.54E-03
78GO:0009640: photomorphogenesis2.56E-03
79GO:0071486: cellular response to high light intensity2.62E-03
80GO:0042274: ribosomal small subunit biogenesis2.62E-03
81GO:0009765: photosynthesis, light harvesting2.62E-03
82GO:0009649: entrainment of circadian clock2.62E-03
83GO:1902347: response to strigolactone2.62E-03
84GO:0034613: cellular protein localization2.62E-03
85GO:0006542: glutamine biosynthetic process2.62E-03
86GO:0070534: protein K63-linked ubiquitination2.62E-03
87GO:0055114: oxidation-reduction process3.30E-03
88GO:0000304: response to singlet oxygen3.35E-03
89GO:0010117: photoprotection3.35E-03
90GO:0016120: carotene biosynthetic process3.35E-03
91GO:0009229: thiamine diphosphate biosynthetic process3.35E-03
92GO:0009107: lipoate biosynthetic process3.35E-03
93GO:0016117: carotenoid biosynthetic process3.47E-03
94GO:0010118: stomatal movement3.75E-03
95GO:0009958: positive gravitropism4.05E-03
96GO:0009959: negative gravitropism4.14E-03
97GO:0006555: methionine metabolic process4.14E-03
98GO:0060918: auxin transport4.14E-03
99GO:0006796: phosphate-containing compound metabolic process4.14E-03
100GO:0031053: primary miRNA processing4.14E-03
101GO:0042793: transcription from plastid promoter4.14E-03
102GO:1901371: regulation of leaf morphogenesis4.14E-03
103GO:0009228: thiamine biosynthetic process4.14E-03
104GO:0006301: postreplication repair4.14E-03
105GO:0010304: PSII associated light-harvesting complex II catabolic process4.14E-03
106GO:0016070: RNA metabolic process4.14E-03
107GO:0009646: response to absence of light4.35E-03
108GO:0010310: regulation of hydrogen peroxide metabolic process4.99E-03
109GO:0019509: L-methionine salvage from methylthioadenosine4.99E-03
110GO:0010244: response to low fluence blue light stimulus by blue low-fluence system4.99E-03
111GO:0034389: lipid particle organization4.99E-03
112GO:0009903: chloroplast avoidance movement4.99E-03
113GO:0010019: chloroplast-nucleus signaling pathway4.99E-03
114GO:1900056: negative regulation of leaf senescence5.89E-03
115GO:0006821: chloride transport5.89E-03
116GO:0030026: cellular manganese ion homeostasis5.89E-03
117GO:0051510: regulation of unidimensional cell growth5.89E-03
118GO:0007155: cell adhesion6.85E-03
119GO:0045292: mRNA cis splicing, via spliceosome6.85E-03
120GO:0010928: regulation of auxin mediated signaling pathway6.85E-03
121GO:0009787: regulation of abscisic acid-activated signaling pathway6.85E-03
122GO:0009704: de-etiolation6.85E-03
123GO:0000105: histidine biosynthetic process6.85E-03
124GO:0009231: riboflavin biosynthetic process6.85E-03
125GO:0016559: peroxisome fission6.85E-03
126GO:0046777: protein autophosphorylation7.61E-03
127GO:0071482: cellular response to light stimulus7.86E-03
128GO:0019430: removal of superoxide radicals7.86E-03
129GO:0010100: negative regulation of photomorphogenesis7.86E-03
130GO:0006526: arginine biosynthetic process7.86E-03
131GO:0032544: plastid translation7.86E-03
132GO:0009821: alkaloid biosynthetic process8.92E-03
133GO:0046916: cellular transition metal ion homeostasis8.92E-03
134GO:0019432: triglyceride biosynthetic process8.92E-03
135GO:0006783: heme biosynthetic process8.92E-03
136GO:0015780: nucleotide-sugar transport8.92E-03
137GO:0009416: response to light stimulus9.04E-03
138GO:0018298: protein-chromophore linkage9.46E-03
139GO:0000160: phosphorelay signal transduction system9.95E-03
140GO:0006779: porphyrin-containing compound biosynthetic process1.00E-02
141GO:0048354: mucilage biosynthetic process involved in seed coat development1.00E-02
142GO:0010380: regulation of chlorophyll biosynthetic process1.00E-02
143GO:0008356: asymmetric cell division1.00E-02
144GO:1900426: positive regulation of defense response to bacterium1.00E-02
145GO:0010192: mucilage biosynthetic process1.12E-02
146GO:0055062: phosphate ion homeostasis1.12E-02
147GO:0051555: flavonol biosynthetic process1.12E-02
148GO:0009641: shade avoidance1.12E-02
149GO:0006816: calcium ion transport1.24E-02
150GO:0043085: positive regulation of catalytic activity1.24E-02
151GO:0008285: negative regulation of cell proliferation1.24E-02
152GO:0006352: DNA-templated transcription, initiation1.24E-02
153GO:0018119: peptidyl-cysteine S-nitrosylation1.24E-02
154GO:0006790: sulfur compound metabolic process1.37E-02
155GO:0045037: protein import into chloroplast stroma1.37E-02
156GO:0030048: actin filament-based movement1.49E-02
157GO:0009785: blue light signaling pathway1.49E-02
158GO:0006108: malate metabolic process1.49E-02
159GO:0050826: response to freezing1.49E-02
160GO:0009718: anthocyanin-containing compound biosynthetic process1.49E-02
161GO:0010075: regulation of meristem growth1.49E-02
162GO:0009725: response to hormone1.49E-02
163GO:0009744: response to sucrose1.55E-02
164GO:0034605: cellular response to heat1.63E-02
165GO:0006541: glutamine metabolic process1.63E-02
166GO:0019253: reductive pentose-phosphate cycle1.63E-02
167GO:0007031: peroxisome organization1.77E-02
168GO:0009825: multidimensional cell growth1.77E-02
169GO:0000162: tryptophan biosynthetic process1.91E-02
170GO:0006071: glycerol metabolic process1.91E-02
171GO:0006289: nucleotide-excision repair2.05E-02
172GO:2000377: regulation of reactive oxygen species metabolic process2.05E-02
173GO:0009585: red, far-red light phototransduction2.10E-02
174GO:0007017: microtubule-based process2.20E-02
175GO:0010073: meristem maintenance2.20E-02
176GO:0006810: transport2.22E-02
177GO:0019915: lipid storage2.36E-02
178GO:0016226: iron-sulfur cluster assembly2.51E-02
179GO:0080092: regulation of pollen tube growth2.51E-02
180GO:0009693: ethylene biosynthetic process2.67E-02
181GO:0010227: floral organ abscission2.67E-02
182GO:0006012: galactose metabolic process2.67E-02
183GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.81E-02
184GO:0070417: cellular response to cold3.01E-02
185GO:0080022: primary root development3.18E-02
186GO:0010051: xylem and phloem pattern formation3.18E-02
187GO:0006520: cellular amino acid metabolic process3.35E-02
188GO:0042752: regulation of circadian rhythm3.53E-02
189GO:0009851: auxin biosynthetic process3.71E-02
190GO:0006508: proteolysis3.80E-02
191GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.89E-02
192GO:0009058: biosynthetic process3.94E-02
193GO:0007264: small GTPase mediated signal transduction4.08E-02
194GO:0019761: glucosinolate biosynthetic process4.08E-02
195GO:0009630: gravitropism4.08E-02
196GO:0030163: protein catabolic process4.27E-02
197GO:1901657: glycosyl compound metabolic process4.27E-02
198GO:0006464: cellular protein modification process4.46E-02
199GO:0048364: root development4.60E-02
200GO:0071805: potassium ion transmembrane transport4.66E-02
201GO:0000910: cytokinesis4.85E-02
202GO:0009409: response to cold4.95E-02
RankGO TermAdjusted P value
1GO:0045436: lycopene beta cyclase activity0.00E+00
2GO:0030946: protein tyrosine phosphatase activity, metal-dependent0.00E+00
3GO:0003992: N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity0.00E+00
4GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity0.00E+00
5GO:0018738: S-formylglutathione hydrolase activity0.00E+00
6GO:0050486: intramolecular transferase activity, transferring hydroxy groups0.00E+00
7GO:0015220: choline transmembrane transporter activity0.00E+00
8GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity0.00E+00
9GO:0047793: cycloeucalenol cycloisomerase activity0.00E+00
10GO:0046905: phytoene synthase activity0.00E+00
11GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity0.00E+00
12GO:0004417: hydroxyethylthiazole kinase activity0.00E+00
13GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
14GO:0033819: lipoyl(octanoyl) transferase activity0.00E+00
15GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
16GO:0004848: ureidoglycolate hydrolase activity2.30E-05
17GO:0000254: C-4 methylsterol oxidase activity5.04E-05
18GO:0009882: blue light photoreceptor activity5.04E-05
19GO:0046480: galactolipid galactosyltransferase activity3.84E-04
20GO:0046906: tetrapyrrole binding3.84E-04
21GO:0080079: cellobiose glucosidase activity3.84E-04
22GO:0033984: indole-3-glycerol-phosphate lyase activity3.84E-04
23GO:0015085: calcium ion transmembrane transporter activity3.84E-04
24GO:0016783: sulfurtransferase activity3.84E-04
25GO:0004424: imidazoleglycerol-phosphate dehydratase activity3.84E-04
26GO:0004071: aspartate-ammonia ligase activity3.84E-04
27GO:0004325: ferrochelatase activity3.84E-04
28GO:0051996: squalene synthase activity3.84E-04
29GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity3.84E-04
30GO:0016784: 3-mercaptopyruvate sulfurtransferase activity3.84E-04
31GO:0048038: quinone binding6.19E-04
32GO:0071949: FAD binding6.38E-04
33GO:0042802: identical protein binding8.10E-04
34GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity8.33E-04
35GO:0016415: octanoyltransferase activity8.33E-04
36GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity8.33E-04
37GO:0004046: aminoacylase activity8.33E-04
38GO:0004310: farnesyl-diphosphate farnesyltransferase activity8.33E-04
39GO:0003862: 3-isopropylmalate dehydrogenase activity8.33E-04
40GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity8.33E-04
41GO:0035241: protein-arginine omega-N monomethyltransferase activity8.33E-04
42GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity8.33E-04
43GO:0017118: lipoyltransferase activity8.33E-04
44GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity8.33E-04
45GO:0080045: quercetin 3'-O-glucosyltransferase activity8.33E-04
46GO:0043425: bHLH transcription factor binding8.33E-04
47GO:0004180: carboxypeptidase activity1.35E-03
48GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity1.35E-03
49GO:0010277: chlorophyllide a oxygenase [overall] activity1.35E-03
50GO:0046524: sucrose-phosphate synthase activity1.35E-03
51GO:0032947: protein complex scaffold1.35E-03
52GO:0019003: GDP binding1.35E-03
53GO:0003861: 3-isopropylmalate dehydratase activity1.35E-03
54GO:0003935: GTP cyclohydrolase II activity1.35E-03
55GO:0008469: histone-arginine N-methyltransferase activity1.35E-03
56GO:0004222: metalloendopeptidase activity1.55E-03
57GO:0004792: thiosulfate sulfurtransferase activity1.95E-03
58GO:0016851: magnesium chelatase activity1.95E-03
59GO:0000339: RNA cap binding1.95E-03
60GO:0047627: adenylylsulfatase activity1.95E-03
61GO:0046872: metal ion binding1.99E-03
62GO:0016491: oxidoreductase activity2.25E-03
63GO:0004176: ATP-dependent peptidase activity2.47E-03
64GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.62E-03
65GO:0015369: calcium:proton antiporter activity2.62E-03
66GO:0016987: sigma factor activity2.62E-03
67GO:0005253: anion channel activity2.62E-03
68GO:0015368: calcium:cation antiporter activity2.62E-03
69GO:0001053: plastid sigma factor activity2.62E-03
70GO:0004834: tryptophan synthase activity2.62E-03
71GO:0051537: 2 iron, 2 sulfur cluster binding2.83E-03
72GO:0004356: glutamate-ammonia ligase activity3.35E-03
73GO:0005506: iron ion binding3.46E-03
74GO:0008080: N-acetyltransferase activity4.05E-03
75GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity4.14E-03
76GO:0000293: ferric-chelate reductase activity4.14E-03
77GO:0004784: superoxide dismutase activity4.14E-03
78GO:0005247: voltage-gated chloride channel activity4.14E-03
79GO:0080046: quercetin 4'-O-glucosyltransferase activity4.14E-03
80GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups4.83E-03
81GO:0004144: diacylglycerol O-acyltransferase activity4.99E-03
82GO:0030060: L-malate dehydrogenase activity4.99E-03
83GO:0008113: peptide-methionine (S)-S-oxide reductase activity4.99E-03
84GO:0004518: nuclease activity5.34E-03
85GO:0005338: nucleotide-sugar transmembrane transporter activity5.89E-03
86GO:0004427: inorganic diphosphatase activity5.89E-03
87GO:0016621: cinnamoyl-CoA reductase activity5.89E-03
88GO:0019899: enzyme binding5.89E-03
89GO:0008237: metallopeptidase activity6.44E-03
90GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity6.85E-03
91GO:0004034: aldose 1-epimerase activity6.85E-03
92GO:0046914: transition metal ion binding7.86E-03
93GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen8.11E-03
94GO:0030247: polysaccharide binding8.53E-03
95GO:0042803: protein homodimerization activity9.70E-03
96GO:0016844: strictosidine synthase activity1.00E-02
97GO:0004713: protein tyrosine kinase activity1.12E-02
98GO:0005089: Rho guanyl-nucleotide exchange factor activity1.24E-02
99GO:0004860: protein kinase inhibitor activity1.24E-02
100GO:0004129: cytochrome-c oxidase activity1.24E-02
101GO:0008194: UDP-glycosyltransferase activity1.36E-02
102GO:0008378: galactosyltransferase activity1.37E-02
103GO:0031072: heat shock protein binding1.49E-02
104GO:0000155: phosphorelay sensor kinase activity1.49E-02
105GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.63E-02
106GO:0003887: DNA-directed DNA polymerase activity1.91E-02
107GO:0051536: iron-sulfur cluster binding2.05E-02
108GO:0016788: hydrolase activity, acting on ester bonds2.11E-02
109GO:0015079: potassium ion transmembrane transporter activity2.20E-02
110GO:0080044: quercetin 7-O-glucosyltransferase activity2.73E-02
111GO:0080043: quercetin 3-O-glucosyltransferase activity2.73E-02
112GO:0022857: transmembrane transporter activity2.81E-02
113GO:0003824: catalytic activity3.52E-02
114GO:0016853: isomerase activity3.53E-02
115GO:0050662: coenzyme binding3.53E-02
116GO:0010181: FMN binding3.53E-02
117GO:0004872: receptor activity3.71E-02
118GO:0030170: pyridoxal phosphate binding4.14E-02
119GO:0000156: phosphorelay response regulator activity4.27E-02
120GO:0016757: transferase activity, transferring glycosyl groups4.65E-02
121GO:0008483: transaminase activity4.66E-02
122GO:0016413: O-acetyltransferase activity4.85E-02
RankGO TermAdjusted P value
1GO:0030427: site of polarized growth0.00E+00
2GO:0097218: sieve plate0.00E+00
3GO:0009507: chloroplast2.49E-22
4GO:0009535: chloroplast thylakoid membrane5.07E-09
5GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.86E-05
6GO:0000152: nuclear ubiquitin ligase complex3.84E-04
7GO:0005845: mRNA cap binding complex3.84E-04
8GO:0009536: plastid6.33E-04
9GO:0016604: nuclear body7.52E-04
10GO:0009570: chloroplast stroma7.72E-04
11GO:0005846: nuclear cap binding complex8.33E-04
12GO:0009897: external side of plasma membrane1.35E-03
13GO:0016605: PML body1.35E-03
14GO:0031969: chloroplast membrane1.66E-03
15GO:0042646: plastid nucleoid1.95E-03
16GO:0030286: dynein complex2.62E-03
17GO:0031372: UBC13-MMS2 complex2.62E-03
18GO:0055035: plastid thylakoid membrane3.35E-03
19GO:0034707: chloride channel complex4.14E-03
20GO:0009840: chloroplastic endopeptidase Clp complex4.99E-03
21GO:0031359: integral component of chloroplast outer membrane5.89E-03
22GO:0009295: nucleoid6.44E-03
23GO:0005779: integral component of peroxisomal membrane7.86E-03
24GO:0005811: lipid particle7.86E-03
25GO:0005623: cell8.11E-03
26GO:0042644: chloroplast nucleoid8.92E-03
27GO:0016324: apical plasma membrane1.12E-02
28GO:0005773: vacuole1.16E-02
29GO:0009508: plastid chromosome1.49E-02
30GO:0005769: early endosome1.91E-02
31GO:0009941: chloroplast envelope1.91E-02
32GO:0043234: protein complex1.91E-02
33GO:0005875: microtubule associated complex1.91E-02
34GO:0042651: thylakoid membrane2.20E-02
35GO:0015935: small ribosomal subunit2.36E-02
36GO:0009706: chloroplast inner membrane2.99E-02
37GO:0005777: peroxisome3.57E-02
38GO:0009523: photosystem II3.71E-02
39GO:0009543: chloroplast thylakoid lumen3.74E-02
40GO:0009579: thylakoid3.79E-02
41GO:0005778: peroxisomal membrane4.66E-02
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Gene type



Gene DE type