Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G13950

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0007530: sex determination0.00E+00
2GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
3GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
4GO:0009236: cobalamin biosynthetic process0.00E+00
5GO:0001881: receptor recycling0.00E+00
6GO:0006592: ornithine biosynthetic process0.00E+00
7GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
8GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
9GO:0032211: negative regulation of telomere maintenance via telomerase0.00E+00
10GO:0015746: citrate transport0.00E+00
11GO:0006412: translation5.57E-42
12GO:0042254: ribosome biogenesis2.05E-21
13GO:0006511: ubiquitin-dependent protein catabolic process4.68E-07
14GO:0000027: ribosomal large subunit assembly1.46E-06
15GO:0000028: ribosomal small subunit assembly4.61E-05
16GO:0008333: endosome to lysosome transport5.42E-05
17GO:1902626: assembly of large subunit precursor of preribosome5.42E-05
18GO:0051603: proteolysis involved in cellular protein catabolic process4.00E-04
19GO:0043248: proteasome assembly4.12E-04
20GO:0010265: SCF complex assembly6.16E-04
21GO:2001006: regulation of cellulose biosynthetic process6.16E-04
22GO:0019354: siroheme biosynthetic process6.16E-04
23GO:0000413: protein peptidyl-prolyl isomerization1.05E-03
24GO:0015991: ATP hydrolysis coupled proton transport1.05E-03
25GO:0006662: glycerol ether metabolic process1.15E-03
26GO:0009245: lipid A biosynthetic process1.26E-03
27GO:0051788: response to misfolded protein1.32E-03
28GO:0006432: phenylalanyl-tRNA aminoacylation1.32E-03
29GO:0071668: plant-type cell wall assembly1.32E-03
30GO:0015786: UDP-glucose transport1.32E-03
31GO:0002181: cytoplasmic translation2.18E-03
32GO:0046417: chorismate metabolic process2.18E-03
33GO:0015940: pantothenate biosynthetic process2.18E-03
34GO:0045793: positive regulation of cell size2.18E-03
35GO:0006760: folic acid-containing compound metabolic process2.18E-03
36GO:0015783: GDP-fucose transport2.18E-03
37GO:0034227: tRNA thio-modification2.18E-03
38GO:0046168: glycerol-3-phosphate catabolic process2.18E-03
39GO:0016925: protein sumoylation2.32E-03
40GO:0006006: glucose metabolic process2.64E-03
41GO:0046686: response to cadmium ion3.03E-03
42GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity3.17E-03
43GO:1901332: negative regulation of lateral root development3.17E-03
44GO:0006165: nucleoside diphosphate phosphorylation3.17E-03
45GO:0006168: adenine salvage3.17E-03
46GO:0006228: UTP biosynthetic process3.17E-03
47GO:0051131: chaperone-mediated protein complex assembly3.17E-03
48GO:0006882: cellular zinc ion homeostasis3.17E-03
49GO:0001676: long-chain fatty acid metabolic process3.17E-03
50GO:0032877: positive regulation of DNA endoreduplication3.17E-03
51GO:0046836: glycolipid transport3.17E-03
52GO:1902358: sulfate transmembrane transport3.17E-03
53GO:0006166: purine ribonucleoside salvage3.17E-03
54GO:0070301: cellular response to hydrogen peroxide3.17E-03
55GO:0006107: oxaloacetate metabolic process3.17E-03
56GO:0009647: skotomorphogenesis3.17E-03
57GO:0006241: CTP biosynthetic process3.17E-03
58GO:0072334: UDP-galactose transmembrane transport3.17E-03
59GO:0006072: glycerol-3-phosphate metabolic process3.17E-03
60GO:0006487: protein N-linked glycosylation4.15E-03
61GO:0032366: intracellular sterol transport4.28E-03
62GO:0051781: positive regulation of cell division4.28E-03
63GO:0006183: GTP biosynthetic process4.28E-03
64GO:0010363: regulation of plant-type hypersensitive response4.28E-03
65GO:0006621: protein retention in ER lumen4.28E-03
66GO:0009853: photorespiration4.62E-03
67GO:0034599: cellular response to oxidative stress4.89E-03
68GO:0015992: proton transport5.04E-03
69GO:0010431: seed maturation5.04E-03
70GO:0061077: chaperone-mediated protein folding5.04E-03
71GO:0060776: simple leaf morphogenesis5.49E-03
72GO:0036065: fucosylation5.49E-03
73GO:1902183: regulation of shoot apical meristem development5.49E-03
74GO:0044209: AMP salvage5.49E-03
75GO:0016192: vesicle-mediated transport6.47E-03
76GO:0006574: valine catabolic process6.81E-03
77GO:0006555: methionine metabolic process6.81E-03
78GO:0006796: phosphate-containing compound metabolic process6.81E-03
79GO:0042147: retrograde transport, endosome to Golgi7.12E-03
80GO:0045454: cell redox homeostasis8.12E-03
81GO:0006120: mitochondrial electron transport, NADH to ubiquinone8.24E-03
82GO:0009955: adaxial/abaxial pattern specification8.24E-03
83GO:0019509: L-methionine salvage from methylthioadenosine8.24E-03
84GO:1901001: negative regulation of response to salt stress8.24E-03
85GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response8.24E-03
86GO:0009612: response to mechanical stimulus8.24E-03
87GO:0015986: ATP synthesis coupled proton transport8.94E-03
88GO:0009735: response to cytokinin9.26E-03
89GO:0010044: response to aluminum ion9.76E-03
90GO:0032880: regulation of protein localization9.76E-03
91GO:0048528: post-embryonic root development9.76E-03
92GO:1900056: negative regulation of leaf senescence9.76E-03
93GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c9.76E-03
94GO:0009651: response to salt stress1.09E-02
95GO:0009642: response to light intensity1.14E-02
96GO:0009690: cytokinin metabolic process1.14E-02
97GO:0006506: GPI anchor biosynthetic process1.14E-02
98GO:0048658: anther wall tapetum development1.14E-02
99GO:0031540: regulation of anthocyanin biosynthetic process1.14E-02
100GO:0009231: riboflavin biosynthetic process1.14E-02
101GO:0010928: regulation of auxin mediated signaling pathway1.14E-02
102GO:0006914: autophagy1.25E-02
103GO:0006526: arginine biosynthetic process1.31E-02
104GO:0010204: defense response signaling pathway, resistance gene-independent1.31E-02
105GO:0009808: lignin metabolic process1.31E-02
106GO:0022900: electron transport chain1.31E-02
107GO:0015996: chlorophyll catabolic process1.31E-02
108GO:0016569: covalent chromatin modification1.37E-02
109GO:0006754: ATP biosynthetic process1.49E-02
110GO:0048589: developmental growth1.49E-02
111GO:0015780: nucleotide-sugar transport1.49E-02
112GO:0098656: anion transmembrane transport1.49E-02
113GO:0080144: amino acid homeostasis1.49E-02
114GO:0071577: zinc II ion transmembrane transport1.67E-02
115GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process1.67E-02
116GO:0000387: spliceosomal snRNP assembly1.67E-02
117GO:0000103: sulfate assimilation1.87E-02
118GO:0006032: chitin catabolic process1.87E-02
119GO:0043069: negative regulation of programmed cell death1.87E-02
120GO:0009793: embryo development ending in seed dormancy2.00E-02
121GO:0052544: defense response by callose deposition in cell wall2.07E-02
122GO:0015770: sucrose transport2.07E-02
123GO:0000272: polysaccharide catabolic process2.07E-02
124GO:0009073: aromatic amino acid family biosynthetic process2.07E-02
125GO:0006913: nucleocytoplasmic transport2.07E-02
126GO:0010043: response to zinc ion2.27E-02
127GO:0008361: regulation of cell size2.28E-02
128GO:0006820: anion transport2.28E-02
129GO:0006414: translational elongation2.37E-02
130GO:0010628: positive regulation of gene expression2.50E-02
131GO:0006626: protein targeting to mitochondrion2.50E-02
132GO:0010102: lateral root morphogenesis2.50E-02
133GO:0006108: malate metabolic process2.50E-02
134GO:0006807: nitrogen compound metabolic process2.50E-02
135GO:0006446: regulation of translational initiation2.73E-02
136GO:0048467: gynoecium development2.73E-02
137GO:0007034: vacuolar transport2.73E-02
138GO:0010039: response to iron ion2.96E-02
139GO:0009969: xyloglucan biosynthetic process2.96E-02
140GO:0019853: L-ascorbic acid biosynthetic process2.96E-02
141GO:0006071: glycerol metabolic process3.20E-02
142GO:0009926: auxin polar transport3.21E-02
143GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process3.38E-02
144GO:0006406: mRNA export from nucleus3.44E-02
145GO:0006289: nucleotide-excision repair3.44E-02
146GO:0009116: nucleoside metabolic process3.44E-02
147GO:0009965: leaf morphogenesis3.60E-02
148GO:0043622: cortical microtubule organization3.69E-02
149GO:0051302: regulation of cell division3.69E-02
150GO:0006855: drug transmembrane transport3.74E-02
151GO:0051260: protein homooligomerization3.95E-02
152GO:0007005: mitochondrion organization4.21E-02
153GO:0016226: iron-sulfur cluster assembly4.21E-02
154GO:0006486: protein glycosylation4.31E-02
155GO:0006457: protein folding4.74E-02
156GO:0019722: calcium-mediated signaling4.75E-02
157GO:0010584: pollen exine formation4.75E-02
RankGO TermAdjusted P value
1GO:0010472: GDP-galactose:glucose-1-phosphate guanylyltransferase activity0.00E+00
2GO:0051266: sirohydrochlorin ferrochelatase activity0.00E+00
3GO:0004746: riboflavin synthase activity0.00E+00
4GO:0003796: lysozyme activity0.00E+00
5GO:0010471: GDP-galactose:mannose-1-phosphate guanylyltransferase activity0.00E+00
6GO:0008777: acetylornithine deacetylase activity0.00E+00
7GO:0016852: sirohydrochlorin cobaltochelatase activity0.00E+00
8GO:0008928: mannose-1-phosphate guanylyltransferase (GDP) activity0.00E+00
9GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
10GO:0010474: glucose-1-phosphate guanylyltransferase (GDP) activity0.00E+00
11GO:0010473: GDP-galactose:myoinositol-1-phosphate guanylyltransferase activity0.00E+00
12GO:0050152: omega-amidase activity0.00E+00
13GO:0003735: structural constituent of ribosome4.46E-58
14GO:0004298: threonine-type endopeptidase activity7.21E-15
15GO:0003729: mRNA binding1.98E-10
16GO:0008233: peptidase activity2.00E-08
17GO:0004129: cytochrome-c oxidase activity7.74E-06
18GO:0019843: rRNA binding3.35E-05
19GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.73E-05
20GO:0004576: oligosaccharyl transferase activity1.95E-04
21GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity2.95E-04
22GO:0031386: protein tag2.95E-04
23GO:0031177: phosphopantetheine binding4.12E-04
24GO:0000035: acyl binding5.47E-04
25GO:0102293: pheophytinase b activity6.16E-04
26GO:0080048: GDP-D-glucose phosphorylase activity6.16E-04
27GO:0015137: citrate transmembrane transporter activity6.16E-04
28GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity6.16E-04
29GO:0010475: galactose-1-phosphate guanylyltransferase (GDP) activity6.16E-04
30GO:0080047: GDP-L-galactose phosphorylase activity6.16E-04
31GO:0050897: cobalt ion binding7.17E-04
32GO:0035064: methylated histone binding8.71E-04
33GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process8.71E-04
34GO:0047134: protein-disulfide reductase activity9.51E-04
35GO:0046933: proton-transporting ATP synthase activity, rotational mechanism1.15E-03
36GO:0004791: thioredoxin-disulfide reductase activity1.26E-03
37GO:0004826: phenylalanine-tRNA ligase activity1.32E-03
38GO:0008517: folic acid transporter activity1.32E-03
39GO:0047746: chlorophyllase activity1.32E-03
40GO:0018708: thiol S-methyltransferase activity1.32E-03
41GO:0004106: chorismate mutase activity1.32E-03
42GO:0001055: RNA polymerase II activity1.50E-03
43GO:0008137: NADH dehydrogenase (ubiquinone) activity1.51E-03
44GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor1.78E-03
45GO:0001054: RNA polymerase I activity2.02E-03
46GO:0004557: alpha-galactosidase activity2.18E-03
47GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity2.18E-03
48GO:0005457: GDP-fucose transmembrane transporter activity2.18E-03
49GO:0052692: raffinose alpha-galactosidase activity2.18E-03
50GO:0008430: selenium binding2.18E-03
51GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity2.18E-03
52GO:0001056: RNA polymerase III activity2.32E-03
53GO:0005460: UDP-glucose transmembrane transporter activity3.17E-03
54GO:0004550: nucleoside diphosphate kinase activity3.17E-03
55GO:0008097: 5S rRNA binding3.17E-03
56GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity3.17E-03
57GO:0017089: glycolipid transporter activity3.17E-03
58GO:0003999: adenine phosphoribosyltransferase activity3.17E-03
59GO:0015035: protein disulfide oxidoreductase activity3.45E-03
60GO:0005528: FK506 binding4.15E-03
61GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances4.28E-03
62GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor4.28E-03
63GO:0010011: auxin binding4.28E-03
64GO:0051861: glycolipid binding4.28E-03
65GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds4.28E-03
66GO:0070628: proteasome binding4.28E-03
67GO:0046923: ER retention sequence binding4.28E-03
68GO:0004040: amidase activity5.49E-03
69GO:0005496: steroid binding5.49E-03
70GO:0005459: UDP-galactose transmembrane transporter activity5.49E-03
71GO:0016462: pyrophosphatase activity6.81E-03
72GO:0080046: quercetin 4'-O-glucosyltransferase activity6.81E-03
73GO:0031593: polyubiquitin binding6.81E-03
74GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity6.81E-03
75GO:0102391: decanoate--CoA ligase activity8.24E-03
76GO:0004602: glutathione peroxidase activity8.24E-03
77GO:0051920: peroxiredoxin activity8.24E-03
78GO:0003899: DNA-directed 5'-3' RNA polymerase activity9.38E-03
79GO:0004872: receptor activity9.61E-03
80GO:0008143: poly(A) binding9.76E-03
81GO:0008320: protein transmembrane transporter activity9.76E-03
82GO:0005085: guanyl-nucleotide exchange factor activity9.76E-03
83GO:0004467: long-chain fatty acid-CoA ligase activity9.76E-03
84GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity9.76E-03
85GO:0005338: nucleotide-sugar transmembrane transporter activity9.76E-03
86GO:0042162: telomeric DNA binding9.76E-03
87GO:0004427: inorganic diphosphatase activity9.76E-03
88GO:0008121: ubiquinol-cytochrome-c reductase activity9.76E-03
89GO:0015288: porin activity1.14E-02
90GO:0016209: antioxidant activity1.14E-02
91GO:0052747: sinapyl alcohol dehydrogenase activity1.14E-02
92GO:0008271: secondary active sulfate transmembrane transporter activity1.31E-02
93GO:0015078: hydrogen ion transmembrane transporter activity1.31E-02
94GO:0008308: voltage-gated anion channel activity1.31E-02
95GO:0008417: fucosyltransferase activity1.49E-02
96GO:0000989: transcription factor activity, transcription factor binding1.49E-02
97GO:0008889: glycerophosphodiester phosphodiesterase activity1.49E-02
98GO:0004568: chitinase activity1.87E-02
99GO:0046961: proton-transporting ATPase activity, rotational mechanism2.07E-02
100GO:0008794: arsenate reductase (glutaredoxin) activity2.07E-02
101GO:0008559: xenobiotic-transporting ATPase activity2.07E-02
102GO:0008515: sucrose transmembrane transporter activity2.07E-02
103GO:0000049: tRNA binding2.28E-02
104GO:0045551: cinnamyl-alcohol dehydrogenase activity2.28E-02
105GO:0015116: sulfate transmembrane transporter activity2.28E-02
106GO:0003746: translation elongation factor activity2.49E-02
107GO:0003697: single-stranded DNA binding2.49E-02
108GO:0004089: carbonate dehydratase activity2.50E-02
109GO:0003993: acid phosphatase activity2.60E-02
110GO:0008266: poly(U) RNA binding2.73E-02
111GO:0051539: 4 iron, 4 sulfur cluster binding2.83E-02
112GO:0051119: sugar transmembrane transporter activity2.96E-02
113GO:0003714: transcription corepressor activity3.44E-02
114GO:0051536: iron-sulfur cluster binding3.44E-02
115GO:0005385: zinc ion transmembrane transporter activity3.44E-02
116GO:0043130: ubiquitin binding3.44E-02
117GO:0043621: protein self-association3.47E-02
118GO:0051087: chaperone binding3.69E-02
119GO:0051287: NAD binding3.88E-02
120GO:0008514: organic anion transmembrane transporter activity4.75E-02
RankGO TermAdjusted P value
1GO:0016469: proton-transporting two-sector ATPase complex0.00E+00
2GO:0097361: CIA complex0.00E+00
3GO:0005840: ribosome3.64E-42
4GO:0022626: cytosolic ribosome9.05E-40
5GO:0022625: cytosolic large ribosomal subunit1.95E-39
6GO:0022627: cytosolic small ribosomal subunit1.94E-19
7GO:0005829: cytosol6.83E-19
8GO:0000502: proteasome complex2.73E-15
9GO:0005839: proteasome core complex7.21E-15
10GO:0005737: cytoplasm9.68E-15
11GO:0005730: nucleolus1.23E-11
12GO:0016020: membrane8.37E-09
13GO:0005774: vacuolar membrane1.06E-08
14GO:0019773: proteasome core complex, alpha-subunit complex2.18E-08
15GO:0005773: vacuole2.28E-08
16GO:0015934: large ribosomal subunit5.55E-07
17GO:0005747: mitochondrial respiratory chain complex I8.37E-07
18GO:0005771: multivesicular body1.21E-05
19GO:0005753: mitochondrial proton-transporting ATP synthase complex2.35E-05
20GO:0005783: endoplasmic reticulum4.15E-05
21GO:0009506: plasmodesma1.23E-04
22GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)1.95E-04
23GO:0005665: DNA-directed RNA polymerase II, core complex2.17E-04
24GO:0008250: oligosaccharyltransferase complex2.95E-04
25GO:0005750: mitochondrial respiratory chain complex III3.07E-04
26GO:0005618: cell wall3.16E-04
27GO:0030904: retromer complex4.12E-04
28GO:0000419: DNA-directed RNA polymerase V complex4.17E-04
29GO:0045271: respiratory chain complex I5.44E-04
30GO:0005732: small nucleolar ribonucleoprotein complex8.33E-04
31GO:0000421: autophagosome membrane8.71E-04
32GO:0005736: DNA-directed RNA polymerase I complex1.26E-03
33GO:0005697: telomerase holoenzyme complex1.32E-03
34GO:0035145: exon-exon junction complex1.32E-03
35GO:0005666: DNA-directed RNA polymerase III complex1.50E-03
36GO:0008541: proteasome regulatory particle, lid subcomplex2.02E-03
37GO:0005853: eukaryotic translation elongation factor 1 complex2.18E-03
38GO:0005751: mitochondrial respiratory chain complex IV2.18E-03
39GO:0046861: glyoxysomal membrane2.18E-03
40GO:0005788: endoplasmic reticulum lumen2.60E-03
41GO:0009331: glycerol-3-phosphate dehydrogenase complex3.17E-03
42GO:0033180: proton-transporting V-type ATPase, V1 domain3.17E-03
43GO:1990726: Lsm1-7-Pat1 complex3.17E-03
44GO:0005758: mitochondrial intermembrane space4.15E-03
45GO:0033179: proton-transporting V-type ATPase, V0 domain4.28E-03
46GO:0016471: vacuolar proton-transporting V-type ATPase complex4.28E-03
47GO:0070469: respiratory chain4.58E-03
48GO:0015935: small ribosomal subunit5.04E-03
49GO:0005746: mitochondrial respiratory chain5.49E-03
50GO:0031410: cytoplasmic vesicle5.52E-03
51GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)6.81E-03
52GO:0016272: prefoldin complex8.24E-03
53GO:0031966: mitochondrial membrane8.57E-03
54GO:0009507: chloroplast8.75E-03
55GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane9.76E-03
56GO:0045273: respiratory chain complex II1.14E-02
57GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)1.14E-02
58GO:0005688: U6 snRNP1.14E-02
59GO:0032580: Golgi cisterna membrane1.25E-02
60GO:0046930: pore complex1.31E-02
61GO:0009514: glyoxysome1.31E-02
62GO:0046540: U4/U6 x U5 tri-snRNP complex1.31E-02
63GO:0031090: organelle membrane1.49E-02
64GO:0005763: mitochondrial small ribosomal subunit1.49E-02
65GO:0071011: precatalytic spliceosome1.67E-02
66GO:0005789: endoplasmic reticulum membrane1.74E-02
67GO:0000418: DNA-directed RNA polymerase IV complex1.87E-02
68GO:0005740: mitochondrial envelope1.87E-02
69GO:0071013: catalytic step 2 spliceosome2.07E-02
70GO:0000325: plant-type vacuole2.27E-02
71GO:0019013: viral nucleocapsid2.50E-02
72GO:0009508: plastid chromosome2.50E-02
73GO:0005759: mitochondrial matrix2.62E-02
74GO:0005795: Golgi stack2.96E-02
75GO:0031902: late endosome membrane2.96E-02
76GO:0005741: mitochondrial outer membrane3.95E-02
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Gene type



Gene DE type