co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G13820

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002184: cytoplasmic translational termination	0.00E+00
2	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
3	GO:0005996: monosaccharide metabolic process	0.00E+00
4	GO:0016118: carotenoid catabolic process	0.00E+00
5	GO:0017038: protein import	0.00E+00
6	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
7	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
8	GO:0015717: triose phosphate transport	0.00E+00
9	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
10	GO:0015979: photosynthesis	7.85E-26
11	GO:0009768: photosynthesis, light harvesting in photosystem I	1.63E-16
12	GO:0018298: protein-chromophore linkage	3.15E-13
13	GO:0010027: thylakoid membrane organization	5.73E-12
14	GO:0010196: nonphotochemical quenching	5.75E-11
15	GO:0009645: response to low light intensity stimulus	5.75E-11
16	GO:0009773: photosynthetic electron transport in photosystem I	2.08E-09
17	GO:0009644: response to high light intensity	8.21E-09
18	GO:0032544: plastid translation	4.13E-08
19	GO:0009409: response to cold	1.40E-07
20	GO:0015995: chlorophyll biosynthetic process	1.09E-06
21	GO:0010218: response to far red light	1.87E-06
22	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.01E-06
23	GO:0018026: peptidyl-lysine monomethylation	2.01E-06
24	GO:0009769: photosynthesis, light harvesting in photosystem II	2.03E-06
25	GO:0009658: chloroplast organization	2.16E-06
26	GO:0010114: response to red light	5.25E-06
27	GO:0010206: photosystem II repair	6.37E-06
28	GO:0006000: fructose metabolic process	7.40E-06
29	GO:0006412: translation	2.18E-05
30	GO:0006094: gluconeogenesis	2.33E-05
31	GO:0010207: photosystem II assembly	2.86E-05
32	GO:0010021: amylopectin biosynthetic process	3.11E-05
33	GO:0009637: response to blue light	5.47E-05
34	GO:0019252: starch biosynthetic process	1.71E-04
35	GO:0005978: glycogen biosynthetic process	1.73E-04
36	GO:0031115: negative regulation of microtubule polymerization	2.06E-04
37	GO:0080093: regulation of photorespiration	2.06E-04
38	GO:0043007: maintenance of rDNA	2.06E-04
39	GO:0031998: regulation of fatty acid beta-oxidation	2.06E-04
40	GO:0006002: fructose 6-phosphate metabolic process	2.15E-04
41	GO:0009416: response to light stimulus	4.34E-04
42	GO:0006729: tetrahydrobiopterin biosynthetic process	4.62E-04
43	GO:0016121: carotene catabolic process	4.62E-04
44	GO:0016124: xanthophyll catabolic process	4.62E-04
45	GO:0019388: galactose catabolic process	4.62E-04
46	GO:0097054: L-glutamate biosynthetic process	4.62E-04
47	GO:0005983: starch catabolic process	4.85E-04
48	GO:0005986: sucrose biosynthetic process	5.50E-04
49	GO:0090391: granum assembly	7.52E-04
50	GO:0006518: peptide metabolic process	7.52E-04
51	GO:0035436: triose phosphate transmembrane transport	7.52E-04
52	GO:0016050: vesicle organization	7.52E-04
53	GO:0009269: response to desiccation	1.02E-03
54	GO:0071484: cellular response to light intensity	1.07E-03
55	GO:0006537: glutamate biosynthetic process	1.07E-03
56	GO:0009590: detection of gravity	1.07E-03
57	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.07E-03
58	GO:0010109: regulation of photosynthesis	1.43E-03
59	GO:0019676: ammonia assimilation cycle	1.43E-03
60	GO:0015976: carbon utilization	1.43E-03
61	GO:0016117: carotenoid biosynthetic process	1.43E-03
62	GO:0019464: glycine decarboxylation via glycine cleavage system	1.43E-03
63	GO:0009765: photosynthesis, light harvesting	1.43E-03
64	GO:0006109: regulation of carbohydrate metabolic process	1.43E-03
65	GO:0045727: positive regulation of translation	1.43E-03
66	GO:0015994: chlorophyll metabolic process	1.43E-03
67	GO:0030104: water homeostasis	1.43E-03
68	GO:0015713: phosphoglycerate transport	1.43E-03
69	GO:0006546: glycine catabolic process	1.43E-03
70	GO:0006021: inositol biosynthetic process	1.43E-03
71	GO:0010106: cellular response to iron ion starvation	1.43E-03
72	GO:0009735: response to cytokinin	1.56E-03
73	GO:0006814: sodium ion transport	1.78E-03
74	GO:0016123: xanthophyll biosynthetic process	1.81E-03
75	GO:0016120: carotene biosynthetic process	1.81E-03
76	GO:0006097: glyoxylate cycle	1.81E-03
77	GO:0071554: cell wall organization or biogenesis	2.04E-03
78	GO:0042549: photosystem II stabilization	2.24E-03
79	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.24E-03
80	GO:0000470: maturation of LSU-rRNA	2.24E-03
81	GO:0042793: transcription from plastid promoter	2.24E-03
82	GO:0010190: cytochrome b6f complex assembly	2.24E-03
83	GO:0009635: response to herbicide	2.24E-03
84	GO:0009643: photosynthetic acclimation	2.24E-03
85	GO:0009955: adaxial/abaxial pattern specification	2.69E-03
86	GO:1901259: chloroplast rRNA processing	2.69E-03
87	GO:0030488: tRNA methylation	2.69E-03
88	GO:0009790: embryo development	3.01E-03
89	GO:0071446: cellular response to salicylic acid stimulus	3.16E-03
90	GO:0010038: response to metal ion	3.16E-03
91	GO:0016311: dephosphorylation	3.63E-03
92	GO:0009642: response to light intensity	3.67E-03
93	GO:0006605: protein targeting	3.67E-03
94	GO:0006810: transport	3.77E-03
95	GO:2000031: regulation of salicylic acid mediated signaling pathway	4.20E-03
96	GO:0017004: cytochrome complex assembly	4.20E-03
97	GO:0046685: response to arsenic-containing substance	4.75E-03
98	GO:0006098: pentose-phosphate shunt	4.75E-03
99	GO:0090333: regulation of stomatal closure	4.75E-03
100	GO:0000902: cell morphogenesis	4.75E-03
101	GO:0010205: photoinhibition	5.32E-03
102	GO:0005982: starch metabolic process	5.32E-03
103	GO:0031627: telomeric loop formation	5.93E-03
104	GO:0048829: root cap development	5.93E-03
105	GO:0006415: translational termination	6.55E-03
106	GO:0009073: aromatic amino acid family biosynthetic process	6.55E-03
107	GO:0043085: positive regulation of catalytic activity	6.55E-03
108	GO:0000272: polysaccharide catabolic process	6.55E-03
109	GO:0009750: response to fructose	6.55E-03
110	GO:0018119: peptidyl-cysteine S-nitrosylation	6.55E-03
111	GO:0042254: ribosome biogenesis	6.64E-03
112	GO:0045037: protein import into chloroplast stroma	7.20E-03
113	GO:0010628: positive regulation of gene expression	7.87E-03
114	GO:0006108: malate metabolic process	7.87E-03
115	GO:0006006: glucose metabolic process	7.87E-03
116	GO:0050826: response to freezing	7.87E-03
117	GO:0006364: rRNA processing	8.40E-03
118	GO:0006302: double-strand break repair	8.56E-03
119	GO:0048768: root hair cell tip growth	8.56E-03
120	GO:0019253: reductive pentose-phosphate cycle	8.56E-03
121	GO:0009793: embryo development ending in seed dormancy	9.17E-03
122	GO:0005985: sucrose metabolic process	9.27E-03
123	GO:0006636: unsaturated fatty acid biosynthetic process	1.00E-02
124	GO:0045454: cell redox homeostasis	1.07E-02
125	GO:0043622: cortical microtubule organization	1.15E-02
126	GO:0019915: lipid storage	1.23E-02
127	GO:0061077: chaperone-mediated protein folding	1.23E-02
128	GO:0051321: meiotic cell cycle	1.23E-02
129	GO:0071215: cellular response to abscisic acid stimulus	1.40E-02
130	GO:0009561: megagametogenesis	1.48E-02
131	GO:0042631: cellular response to water deprivation	1.66E-02
132	GO:0008360: regulation of cell shape	1.75E-02
133	GO:0006662: glycerol ether metabolic process	1.75E-02
134	GO:0009646: response to absence of light	1.84E-02
135	GO:0008654: phospholipid biosynthetic process	1.94E-02
136	GO:0055072: iron ion homeostasis	1.94E-02
137	GO:0007623: circadian rhythm	2.08E-02
138	GO:0042742: defense response to bacterium	2.15E-02
139	GO:0010090: trichome morphogenesis	2.23E-02
140	GO:0055114: oxidation-reduction process	2.49E-02
141	GO:0051607: defense response to virus	2.54E-02
142	GO:0009817: defense response to fungus, incompatible interaction	3.19E-02
143	GO:0009834: plant-type secondary cell wall biogenesis	3.42E-02
144	GO:0010119: regulation of stomatal movement	3.54E-02
145	GO:0009853: photorespiration	3.78E-02
146	GO:0006099: tricarboxylic acid cycle	3.90E-02
147	GO:0034599: cellular response to oxidative stress	3.90E-02
148	GO:0005975: carbohydrate metabolic process	3.96E-02
149	GO:0080167: response to karrikin	3.98E-02
150	GO:0042542: response to hydrogen peroxide	4.40E-02
151	GO:0009744: response to sucrose	4.52E-02

Rank	GO Term	Adjusted P value
1	GO:0051738: xanthophyll binding	0.00E+00
2	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
3	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
4	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
5	GO:0016166: phytoene dehydrogenase activity	0.00E+00
6	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
7	GO:0046408: chlorophyll synthetase activity	0.00E+00
8	GO:0031409: pigment binding	5.07E-17
9	GO:0016168: chlorophyll binding	1.42E-15
10	GO:0019843: rRNA binding	2.22E-10
11	GO:0016851: magnesium chelatase activity	5.45E-08
12	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.01E-06
13	GO:0003735: structural constituent of ribosome	7.30E-06
14	GO:0016279: protein-lysine N-methyltransferase activity	3.11E-05
15	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.06E-04
16	GO:0038023: signaling receptor activity	2.06E-04
17	GO:0045485: omega-6 fatty acid desaturase activity	2.06E-04
18	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	2.06E-04
19	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.06E-04
20	GO:0016041: glutamate synthase (ferredoxin) activity	2.06E-04
21	GO:0033201: alpha-1,4-glucan synthase activity	4.62E-04
22	GO:0003844: 1,4-alpha-glucan branching enzyme activity	4.62E-04
23	GO:0004512: inositol-3-phosphate synthase activity	4.62E-04
24	GO:1901981: phosphatidylinositol phosphate binding	4.62E-04
25	GO:0004614: phosphoglucomutase activity	4.62E-04
26	GO:0008967: phosphoglycolate phosphatase activity	4.62E-04
27	GO:0010291: carotene beta-ring hydroxylase activity	4.62E-04
28	GO:0047746: chlorophyllase activity	4.62E-04
29	GO:0010297: heteropolysaccharide binding	4.62E-04
30	GO:0031072: heat shock protein binding	5.50E-04
31	GO:0015462: ATPase-coupled protein transmembrane transporter activity	7.52E-04
32	GO:0043169: cation binding	7.52E-04
33	GO:0004373: glycogen (starch) synthase activity	7.52E-04
34	GO:0071917: triose-phosphate transmembrane transporter activity	7.52E-04
35	GO:0008508: bile acid:sodium symporter activity	1.07E-03
36	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.07E-03
37	GO:0016149: translation release factor activity, codon specific	1.07E-03
38	GO:0043023: ribosomal large subunit binding	1.07E-03
39	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.43E-03
40	GO:0009011: starch synthase activity	1.43E-03
41	GO:0015120: phosphoglycerate transmembrane transporter activity	1.43E-03
42	GO:0004040: amidase activity	1.81E-03
43	GO:0051538: 3 iron, 4 sulfur cluster binding	1.81E-03
44	GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity	1.81E-03
45	GO:0004332: fructose-bisphosphate aldolase activity	2.24E-03
46	GO:0016615: malate dehydrogenase activity	2.24E-03
47	GO:0030060: L-malate dehydrogenase activity	2.69E-03
48	GO:0016413: O-acetyltransferase activity	2.77E-03
49	GO:0004033: aldo-keto reductase (NADP) activity	3.67E-03
50	GO:0008173: RNA methyltransferase activity	4.20E-03
51	GO:0071949: FAD binding	4.75E-03
52	GO:0003747: translation release factor activity	4.75E-03
53	GO:0046872: metal ion binding	5.29E-03
54	GO:0005545: 1-phosphatidylinositol binding	5.93E-03
55	GO:0008047: enzyme activator activity	5.93E-03
56	GO:0000287: magnesium ion binding	6.33E-03
57	GO:0003691: double-stranded telomeric DNA binding	6.55E-03
58	GO:0004565: beta-galactosidase activity	7.87E-03
59	GO:0005315: inorganic phosphate transmembrane transporter activity	7.87E-03
60	GO:0004089: carbonate dehydratase activity	7.87E-03
61	GO:0016787: hydrolase activity	7.90E-03
62	GO:0008266: poly(U) RNA binding	8.56E-03
63	GO:0016491: oxidoreductase activity	1.02E-02
64	GO:0004857: enzyme inhibitor activity	1.08E-02
65	GO:0005528: FK506 binding	1.08E-02
66	GO:0051082: unfolded protein binding	1.20E-02
67	GO:0008408: 3'-5' exonuclease activity	1.23E-02
68	GO:0022891: substrate-specific transmembrane transporter activity	1.40E-02
69	GO:0008514: organic anion transmembrane transporter activity	1.48E-02
70	GO:0003756: protein disulfide isomerase activity	1.48E-02
71	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.54E-02
72	GO:0047134: protein-disulfide reductase activity	1.57E-02
73	GO:0004791: thioredoxin-disulfide reductase activity	1.84E-02
74	GO:0050662: coenzyme binding	1.84E-02
75	GO:0048038: quinone binding	2.03E-02
76	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.23E-02
77	GO:0004222: metalloendopeptidase activity	3.42E-02
78	GO:0030145: manganese ion binding	3.54E-02
79	GO:0003746: translation elongation factor activity	3.78E-02
80	GO:0003993: acid phosphatase activity	3.90E-02
81	GO:0005515: protein binding	3.98E-02
82	GO:0005198: structural molecule activity	4.91E-02
83	GO:0015293: symporter activity	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0009783: photosystem II antenna complex	0.00E+00
3	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
4	GO:0042579: microbody	0.00E+00
5	GO:0009507: chloroplast	1.79E-60
6	GO:0009534: chloroplast thylakoid	1.25E-59
7	GO:0009535: chloroplast thylakoid membrane	2.12E-42
8	GO:0009941: chloroplast envelope	6.61E-39
9	GO:0009570: chloroplast stroma	5.29E-26
10	GO:0009579: thylakoid	1.18E-25
11	GO:0010287: plastoglobule	1.56E-18
12	GO:0009522: photosystem I	5.46E-17
13	GO:0030076: light-harvesting complex	5.07E-15
14	GO:0009517: PSII associated light-harvesting complex II	3.39E-10
15	GO:0009523: photosystem II	3.91E-09
16	GO:0010007: magnesium chelatase complex	1.12E-08
17	GO:0005840: ribosome	3.50E-08
18	GO:0009543: chloroplast thylakoid lumen	1.52E-07
19	GO:0009508: plastid chromosome	4.17E-07
20	GO:0016020: membrane	1.28E-06
21	GO:0042651: thylakoid membrane	1.53E-06
22	GO:0009706: chloroplast inner membrane	1.55E-06
23	GO:0000427: plastid-encoded plastid RNA polymerase complex	2.01E-06
24	GO:0009295: nucleoid	1.58E-05
25	GO:0030095: chloroplast photosystem II	2.86E-05
26	GO:0031977: thylakoid lumen	7.57E-05
27	GO:0009501: amyloplast	1.73E-04
28	GO:0009782: photosystem I antenna complex	2.06E-04
29	GO:0000791: euchromatin	2.06E-04
30	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.06E-04
31	GO:0009515: granal stacked thylakoid	2.06E-04
32	GO:0009547: plastid ribosome	2.06E-04
33	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.61E-04
34	GO:0010319: stromule	2.68E-04
35	GO:0030093: chloroplast photosystem I	4.62E-04
36	GO:0030870: Mre11 complex	4.62E-04
37	GO:0043036: starch grain	4.62E-04
38	GO:0009509: chromoplast	7.52E-04
39	GO:0090575: RNA polymerase II transcription factor complex	7.52E-04
40	GO:0009654: photosystem II oxygen evolving complex	9.35E-04
41	GO:0048046: apoplast	9.75E-04
42	GO:0005960: glycine cleavage complex	1.07E-03
43	GO:0031969: chloroplast membrane	1.72E-03
44	GO:0055035: plastid thylakoid membrane	1.81E-03
45	GO:0000795: synaptonemal complex	1.81E-03
46	GO:0019898: extrinsic component of membrane	1.91E-03
47	GO:0005623: cell	2.56E-03
48	GO:0009533: chloroplast stromal thylakoid	3.16E-03
49	GO:0009538: photosystem I reaction center	3.67E-03
50	GO:0000783: nuclear telomere cap complex	4.20E-03
51	GO:0015934: large ribosomal subunit	4.42E-03
52	GO:0042644: chloroplast nucleoid	4.75E-03
53	GO:0005763: mitochondrial small ribosomal subunit	4.75E-03
54	GO:0055028: cortical microtubule	5.93E-03
55	GO:0000311: plastid large ribosomal subunit	7.20E-03
56	GO:0016021: integral component of membrane	1.03E-02
57	GO:0000785: chromatin	2.13E-02
58	GO:0090406: pollen tube	4.52E-02