co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G12845

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090706: specification of plant organ position	0.00E+00
2	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
3	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
4	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
5	GO:0080127: fruit septum development	0.00E+00
6	GO:1905177: tracheary element differentiation	0.00E+00
7	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
8	GO:0002184: cytoplasmic translational termination	0.00E+00
9	GO:0030155: regulation of cell adhesion	0.00E+00
10	GO:0018026: peptidyl-lysine monomethylation	5.84E-06
11	GO:0015979: photosynthesis	1.07E-05
12	GO:0061077: chaperone-mediated protein folding	1.08E-05
13	GO:0032544: plastid translation	1.78E-05
14	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	4.51E-05
15	GO:0015995: chlorophyll biosynthetic process	1.28E-04
16	GO:0006631: fatty acid metabolic process	3.07E-04
17	GO:0000025: maltose catabolic process	3.60E-04
18	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	3.60E-04
19	GO:0005980: glycogen catabolic process	3.60E-04
20	GO:0000476: maturation of 4.5S rRNA	3.60E-04
21	GO:0000967: rRNA 5'-end processing	3.60E-04
22	GO:0042371: vitamin K biosynthetic process	3.60E-04
23	GO:0043007: maintenance of rDNA	3.60E-04
24	GO:0010028: xanthophyll cycle	3.60E-04
25	GO:0010450: inflorescence meristem growth	3.60E-04
26	GO:0000023: maltose metabolic process	3.60E-04
27	GO:0005976: polysaccharide metabolic process	7.83E-04
28	GO:0031648: protein destabilization	7.83E-04
29	GO:0016122: xanthophyll metabolic process	7.83E-04
30	GO:0006521: regulation of cellular amino acid metabolic process	7.83E-04
31	GO:0030388: fructose 1,6-bisphosphate metabolic process	7.83E-04
32	GO:0034470: ncRNA processing	7.83E-04
33	GO:0048829: root cap development	8.01E-04
34	GO:0009773: photosynthetic electron transport in photosystem I	9.22E-04
35	GO:0005983: starch catabolic process	1.05E-03
36	GO:0010102: lateral root morphogenesis	1.19E-03
37	GO:0006000: fructose metabolic process	1.27E-03
38	GO:0009405: pathogenesis	1.27E-03
39	GO:0006518: peptide metabolic process	1.27E-03
40	GO:0010623: programmed cell death involved in cell development	1.27E-03
41	GO:0045165: cell fate commitment	1.27E-03
42	GO:0048281: inflorescence morphogenesis	1.27E-03
43	GO:0006412: translation	1.51E-03
44	GO:0010306: rhamnogalacturonan II biosynthetic process	1.83E-03
45	GO:0010148: transpiration	1.83E-03
46	GO:0010731: protein glutathionylation	1.83E-03
47	GO:1901332: negative regulation of lateral root development	1.83E-03
48	GO:0050482: arachidonic acid secretion	1.83E-03
49	GO:0009735: response to cytokinin	1.85E-03
50	GO:0009944: polarity specification of adaxial/abaxial axis	1.85E-03
51	GO:0003333: amino acid transmembrane transport	2.25E-03
52	GO:0015994: chlorophyll metabolic process	2.45E-03
53	GO:0010600: regulation of auxin biosynthetic process	2.45E-03
54	GO:0006552: leucine catabolic process	2.45E-03
55	GO:0015846: polyamine transport	2.45E-03
56	GO:0010508: positive regulation of autophagy	2.45E-03
57	GO:0010021: amylopectin biosynthetic process	2.45E-03
58	GO:0006808: regulation of nitrogen utilization	2.45E-03
59	GO:0006109: regulation of carbohydrate metabolic process	2.45E-03
60	GO:0000304: response to singlet oxygen	3.14E-03
61	GO:0010236: plastoquinone biosynthetic process	3.14E-03
62	GO:1902183: regulation of shoot apical meristem development	3.14E-03
63	GO:0010158: abaxial cell fate specification	3.14E-03
64	GO:0042793: transcription from plastid promoter	3.88E-03
65	GO:0010190: cytochrome b6f complex assembly	3.88E-03
66	GO:0003006: developmental process involved in reproduction	3.88E-03
67	GO:0042549: photosystem II stabilization	3.88E-03
68	GO:0000470: maturation of LSU-rRNA	3.88E-03
69	GO:0009658: chloroplast organization	4.29E-03
70	GO:0042254: ribosome biogenesis	4.41E-03
71	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	4.67E-03
72	GO:0042026: protein refolding	4.67E-03
73	GO:0042372: phylloquinone biosynthetic process	4.67E-03
74	GO:1901259: chloroplast rRNA processing	4.67E-03
75	GO:0006458: 'de novo' protein folding	4.67E-03
76	GO:0030488: tRNA methylation	4.67E-03
77	GO:0009955: adaxial/abaxial pattern specification	4.67E-03
78	GO:0032502: developmental process	4.86E-03
79	GO:0030497: fatty acid elongation	5.52E-03
80	GO:0070370: cellular heat acclimation	5.52E-03
81	GO:0022904: respiratory electron transport chain	5.52E-03
82	GO:0010103: stomatal complex morphogenesis	5.52E-03
83	GO:0010161: red light signaling pathway	5.52E-03
84	GO:0009772: photosynthetic electron transport in photosystem II	5.52E-03
85	GO:0009409: response to cold	5.62E-03
86	GO:0010928: regulation of auxin mediated signaling pathway	6.41E-03
87	GO:0005978: glycogen biosynthetic process	6.41E-03
88	GO:0006353: DNA-templated transcription, termination	6.41E-03
89	GO:0009704: de-etiolation	6.41E-03
90	GO:0006644: phospholipid metabolic process	6.41E-03
91	GO:0010027: thylakoid membrane organization	6.58E-03
92	GO:0006810: transport	6.69E-03
93	GO:0001558: regulation of cell growth	7.36E-03
94	GO:0010093: specification of floral organ identity	7.36E-03
95	GO:0006002: fructose 6-phosphate metabolic process	7.36E-03
96	GO:0016311: dephosphorylation	8.18E-03
97	GO:0051865: protein autoubiquitination	8.35E-03
98	GO:0048507: meristem development	8.35E-03
99	GO:2000024: regulation of leaf development	8.35E-03
100	GO:0006783: heme biosynthetic process	8.35E-03
101	GO:0005982: starch metabolic process	9.38E-03
102	GO:0009631: cold acclimation	9.96E-03
103	GO:0006782: protoporphyrinogen IX biosynthetic process	1.05E-02
104	GO:0043069: negative regulation of programmed cell death	1.05E-02
105	GO:0045490: pectin catabolic process	1.05E-02
106	GO:0031627: telomeric loop formation	1.05E-02
107	GO:0019684: photosynthesis, light reaction	1.16E-02
108	GO:0009089: lysine biosynthetic process via diaminopimelate	1.16E-02
109	GO:0006415: translational termination	1.16E-02
110	GO:0009073: aromatic amino acid family biosynthetic process	1.16E-02
111	GO:0043085: positive regulation of catalytic activity	1.16E-02
112	GO:0009750: response to fructose	1.16E-02
113	GO:0009684: indoleacetic acid biosynthetic process	1.16E-02
114	GO:0010015: root morphogenesis	1.16E-02
115	GO:0000038: very long-chain fatty acid metabolic process	1.16E-02
116	GO:0010582: floral meristem determinacy	1.28E-02
117	GO:0071365: cellular response to auxin stimulus	1.28E-02
118	GO:0010628: positive regulation of gene expression	1.40E-02
119	GO:0018107: peptidyl-threonine phosphorylation	1.40E-02
120	GO:0006094: gluconeogenesis	1.40E-02
121	GO:0005986: sucrose biosynthetic process	1.40E-02
122	GO:0009933: meristem structural organization	1.52E-02
123	GO:0010207: photosystem II assembly	1.52E-02
124	GO:0009266: response to temperature stimulus	1.52E-02
125	GO:0006302: double-strand break repair	1.52E-02
126	GO:0048467: gynoecium development	1.52E-02
127	GO:0010030: positive regulation of seed germination	1.65E-02
128	GO:0009734: auxin-activated signaling pathway	1.80E-02
129	GO:0006289: nucleotide-excision repair	1.92E-02
130	GO:0007017: microtubule-based process	2.06E-02
131	GO:0051302: regulation of cell division	2.06E-02
132	GO:0019915: lipid storage	2.20E-02
133	GO:0031408: oxylipin biosynthetic process	2.20E-02
134	GO:0051321: meiotic cell cycle	2.20E-02
135	GO:0010017: red or far-red light signaling pathway	2.35E-02
136	GO:0035428: hexose transmembrane transport	2.35E-02
137	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.35E-02
138	GO:0019748: secondary metabolic process	2.35E-02
139	GO:0030245: cellulose catabolic process	2.35E-02
140	GO:0009686: gibberellin biosynthetic process	2.50E-02
141	GO:0001944: vasculature development	2.50E-02
142	GO:0006979: response to oxidative stress	2.61E-02
143	GO:0055114: oxidation-reduction process	2.64E-02
144	GO:0010089: xylem development	2.65E-02
145	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.81E-02
146	GO:0042631: cellular response to water deprivation	2.97E-02
147	GO:0009733: response to auxin	3.12E-02
148	GO:0010154: fruit development	3.13E-02
149	GO:0006662: glycerol ether metabolic process	3.13E-02
150	GO:0048868: pollen tube development	3.13E-02
151	GO:0046323: glucose import	3.13E-02
152	GO:0009646: response to absence of light	3.30E-02
153	GO:0019252: starch biosynthetic process	3.47E-02
154	GO:0016042: lipid catabolic process	3.75E-02
155	GO:0010583: response to cyclopentenone	3.81E-02
156	GO:0071281: cellular response to iron ion	3.99E-02
157	GO:1901657: glycosyl compound metabolic process	3.99E-02
158	GO:0006633: fatty acid biosynthetic process	4.26E-02
159	GO:0008152: metabolic process	4.38E-02
160	GO:0009607: response to biotic stimulus	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
2	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
3	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
4	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
5	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
6	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
7	GO:0048039: ubiquinone binding	0.00E+00
8	GO:0009899: ent-kaurene synthase activity	0.00E+00
9	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
10	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
11	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
12	GO:0019843: rRNA binding	1.61E-07
13	GO:0016279: protein-lysine N-methyltransferase activity	8.00E-05
14	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	8.00E-05
15	GO:0005528: FK506 binding	1.62E-04
16	GO:0003735: structural constituent of ribosome	1.97E-04
17	GO:0030570: pectate lyase activity	2.73E-04
18	GO:0008184: glycogen phosphorylase activity	3.60E-04
19	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	3.60E-04
20	GO:0080132: fatty acid alpha-hydroxylase activity	3.60E-04
21	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	3.60E-04
22	GO:0004134: 4-alpha-glucanotransferase activity	3.60E-04
23	GO:0004853: uroporphyrinogen decarboxylase activity	3.60E-04
24	GO:0004645: phosphorylase activity	3.60E-04
25	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.60E-04
26	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	3.60E-04
27	GO:0048038: quinone binding	5.49E-04
28	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	7.83E-04
29	GO:0018708: thiol S-methyltransferase activity	7.83E-04
30	GO:0003844: 1,4-alpha-glucan branching enzyme activity	7.83E-04
31	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	7.83E-04
32	GO:0016868: intramolecular transferase activity, phosphotransferases	7.83E-04
33	GO:0010297: heteropolysaccharide binding	7.83E-04
34	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	7.83E-04
35	GO:0044183: protein binding involved in protein folding	9.22E-04
36	GO:0004565: beta-galactosidase activity	1.19E-03
37	GO:0043169: cation binding	1.27E-03
38	GO:0017150: tRNA dihydrouridine synthase activity	1.27E-03
39	GO:0005504: fatty acid binding	1.27E-03
40	GO:0090729: toxin activity	1.27E-03
41	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.27E-03
42	GO:0015203: polyamine transmembrane transporter activity	1.83E-03
43	GO:0016851: magnesium chelatase activity	1.83E-03
44	GO:0016149: translation release factor activity, codon specific	1.83E-03
45	GO:0043023: ribosomal large subunit binding	1.83E-03
46	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.83E-03
47	GO:0010328: auxin influx transmembrane transporter activity	2.45E-03
48	GO:0019199: transmembrane receptor protein kinase activity	2.45E-03
49	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	2.45E-03
50	GO:0045430: chalcone isomerase activity	2.45E-03
51	GO:0042277: peptide binding	2.45E-03
52	GO:0004659: prenyltransferase activity	2.45E-03
53	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.77E-03
54	GO:0004040: amidase activity	3.14E-03
55	GO:0004623: phospholipase A2 activity	3.14E-03
56	GO:2001070: starch binding	3.88E-03
57	GO:0080030: methyl indole-3-acetate esterase activity	3.88E-03
58	GO:0004602: glutathione peroxidase activity	4.67E-03
59	GO:0051920: peroxiredoxin activity	4.67E-03
60	GO:0004033: aldo-keto reductase (NADP) activity	6.41E-03
61	GO:0005337: nucleoside transmembrane transporter activity	6.41E-03
62	GO:0016209: antioxidant activity	6.41E-03
63	GO:0008173: RNA methyltransferase activity	7.36E-03
64	GO:0003747: translation release factor activity	8.35E-03
65	GO:0015174: basic amino acid transmembrane transporter activity	9.38E-03
66	GO:0008047: enzyme activator activity	1.05E-02
67	GO:0003691: double-stranded telomeric DNA binding	1.16E-02
68	GO:0047372: acylglycerol lipase activity	1.16E-02
69	GO:0016491: oxidoreductase activity	1.51E-02
70	GO:0043621: protein self-association	1.53E-02
71	GO:0051537: 2 iron, 2 sulfur cluster binding	1.53E-02
72	GO:0015293: symporter activity	1.59E-02
73	GO:0004190: aspartic-type endopeptidase activity	1.65E-02
74	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.78E-02
75	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.78E-02
76	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.78E-02
77	GO:0016788: hydrolase activity, acting on ester bonds	1.87E-02
78	GO:0004857: enzyme inhibitor activity	1.92E-02
79	GO:0008408: 3'-5' exonuclease activity	2.20E-02
80	GO:0008810: cellulase activity	2.50E-02
81	GO:0022891: substrate-specific transmembrane transporter activity	2.50E-02
82	GO:0047134: protein-disulfide reductase activity	2.81E-02
83	GO:0001085: RNA polymerase II transcription factor binding	3.13E-02
84	GO:0005355: glucose transmembrane transporter activity	3.30E-02
85	GO:0004791: thioredoxin-disulfide reductase activity	3.30E-02
86	GO:0016829: lyase activity	3.68E-02
87	GO:0004252: serine-type endopeptidase activity	3.77E-02
88	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.99E-02
89	GO:0009055: electron carrier activity	4.24E-02
90	GO:0005200: structural constituent of cytoskeleton	4.35E-02
91	GO:0016597: amino acid binding	4.54E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
3	GO:0009507: chloroplast	8.73E-30
4	GO:0009570: chloroplast stroma	4.79E-20
5	GO:0009535: chloroplast thylakoid membrane	3.55E-18
6	GO:0009534: chloroplast thylakoid	5.53E-14
7	GO:0009941: chloroplast envelope	1.44E-12
8	GO:0009579: thylakoid	1.36E-07
9	GO:0009543: chloroplast thylakoid lumen	1.61E-07
10	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.17E-07
11	GO:0031977: thylakoid lumen	3.08E-05
12	GO:0030095: chloroplast photosystem II	9.92E-05
13	GO:0005840: ribosome	3.19E-04
14	GO:0000791: euchromatin	3.60E-04
15	GO:0009538: photosystem I reaction center	3.97E-04
16	GO:0030870: Mre11 complex	7.83E-04
17	GO:0000427: plastid-encoded plastid RNA polymerase complex	7.83E-04
18	GO:0010287: plastoglobule	1.24E-03
19	GO:0010007: magnesium chelatase complex	1.27E-03
20	GO:0009654: photosystem II oxygen evolving complex	2.05E-03
21	GO:0015935: small ribosomal subunit	2.25E-03
22	GO:0030660: Golgi-associated vesicle membrane	2.45E-03
23	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	2.45E-03
24	GO:0000795: synaptonemal complex	3.14E-03
25	GO:0019898: extrinsic component of membrane	4.25E-03
26	GO:0009840: chloroplastic endopeptidase Clp complex	4.67E-03
27	GO:0009295: nucleoid	5.86E-03
28	GO:0010319: stromule	5.86E-03
29	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	6.41E-03
30	GO:0031305: integral component of mitochondrial inner membrane	6.41E-03
31	GO:0009501: amyloplast	6.41E-03
32	GO:0000783: nuclear telomere cap complex	7.36E-03
33	GO:0045298: tubulin complex	8.35E-03
34	GO:0005763: mitochondrial small ribosomal subunit	8.35E-03
35	GO:0005740: mitochondrial envelope	1.05E-02
36	GO:0005765: lysosomal membrane	1.16E-02
37	GO:0009508: plastid chromosome	1.40E-02
38	GO:0043234: protein complex	1.78E-02
39	GO:0042651: thylakoid membrane	2.06E-02
40	GO:0009532: plastid stroma	2.20E-02
41	GO:0031410: cytoplasmic vesicle	2.35E-02
42	GO:0031969: chloroplast membrane	2.39E-02
43	GO:0009536: plastid	3.61E-02
44	GO:0009505: plant-type cell wall	3.75E-02
45	GO:0000785: chromatin	3.81E-02
46	GO:0048046: apoplast	4.39E-02
47	GO:0005773: vacuole	4.40E-02