co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G12820

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0048870: cell motility	0.00E+00
2	GO:0036172: thiamine salvage	0.00E+00
3	GO:0045740: positive regulation of DNA replication	0.00E+00
4	GO:0006720: isoprenoid metabolic process	0.00E+00
5	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	9.02E-09
6	GO:0016226: iron-sulfur cluster assembly	9.14E-05
7	GO:0006012: galactose metabolic process	1.04E-04
8	GO:0015991: ATP hydrolysis coupled proton transport	1.49E-04
9	GO:0016487: farnesol metabolic process	2.25E-04
10	GO:0009240: isopentenyl diphosphate biosynthetic process	2.25E-04
11	GO:0031468: nuclear envelope reassembly	2.25E-04
12	GO:0043255: regulation of carbohydrate biosynthetic process	5.00E-04
13	GO:0007163: establishment or maintenance of cell polarity	5.00E-04
14	GO:0006432: phenylalanyl-tRNA aminoacylation	5.00E-04
15	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	5.00E-04
16	GO:0019441: tryptophan catabolic process to kynurenine	5.00E-04
17	GO:0050992: dimethylallyl diphosphate biosynthetic process	5.00E-04
18	GO:0010476: gibberellin mediated signaling pathway	8.13E-04
19	GO:0010325: raffinose family oligosaccharide biosynthetic process	8.13E-04
20	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	8.13E-04
21	GO:0043617: cellular response to sucrose starvation	8.13E-04
22	GO:0046417: chorismate metabolic process	8.13E-04
23	GO:0071492: cellular response to UV-A	8.13E-04
24	GO:0006760: folic acid-containing compound metabolic process	8.13E-04
25	GO:0006107: oxaloacetate metabolic process	1.16E-03
26	GO:0035067: negative regulation of histone acetylation	1.16E-03
27	GO:0009399: nitrogen fixation	1.16E-03
28	GO:0006516: glycoprotein catabolic process	1.16E-03
29	GO:1901332: negative regulation of lateral root development	1.16E-03
30	GO:0015976: carbon utilization	1.54E-03
31	GO:0071486: cellular response to high light intensity	1.54E-03
32	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	1.54E-03
33	GO:0009765: photosynthesis, light harvesting	1.54E-03
34	GO:0006221: pyrimidine nucleotide biosynthetic process	1.54E-03
35	GO:0008295: spermidine biosynthetic process	1.54E-03
36	GO:0006749: glutathione metabolic process	1.54E-03
37	GO:0032366: intracellular sterol transport	1.54E-03
38	GO:0031507: heterochromatin assembly	1.54E-03
39	GO:0044205: 'de novo' UMP biosynthetic process	1.54E-03
40	GO:0006542: glutamine biosynthetic process	1.54E-03
41	GO:0018344: protein geranylgeranylation	1.97E-03
42	GO:0030041: actin filament polymerization	1.97E-03
43	GO:0009229: thiamine diphosphate biosynthetic process	1.97E-03
44	GO:0016070: RNA metabolic process	2.43E-03
45	GO:0006555: methionine metabolic process	2.43E-03
46	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	2.43E-03
47	GO:0031053: primary miRNA processing	2.43E-03
48	GO:0007035: vacuolar acidification	2.43E-03
49	GO:0009228: thiamine biosynthetic process	2.43E-03
50	GO:0009117: nucleotide metabolic process	2.43E-03
51	GO:0010090: trichome morphogenesis	2.61E-03
52	GO:0019509: L-methionine salvage from methylthioadenosine	2.91E-03
53	GO:0048444: floral organ morphogenesis	2.91E-03
54	GO:0007050: cell cycle arrest	3.43E-03
55	GO:0000082: G1/S transition of mitotic cell cycle	3.43E-03
56	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	3.43E-03
57	GO:0045292: mRNA cis splicing, via spliceosome	3.98E-03
58	GO:0000028: ribosomal small subunit assembly	3.98E-03
59	GO:0045010: actin nucleation	3.98E-03
60	GO:0010311: lateral root formation	4.53E-03
61	GO:0005975: carbohydrate metabolic process	5.13E-03
62	GO:0006754: ATP biosynthetic process	5.16E-03
63	GO:0009056: catabolic process	5.16E-03
64	GO:0000902: cell morphogenesis	5.16E-03
65	GO:0009853: photorespiration	5.46E-03
66	GO:0006099: tricarboxylic acid cycle	5.71E-03
67	GO:0006325: chromatin organization	6.45E-03
68	GO:0045036: protein targeting to chloroplast	6.45E-03
69	GO:0010015: root morphogenesis	7.13E-03
70	GO:0052544: defense response by callose deposition in cell wall	7.13E-03
71	GO:0072593: reactive oxygen species metabolic process	7.13E-03
72	GO:0009073: aromatic amino acid family biosynthetic process	7.13E-03
73	GO:0016485: protein processing	7.13E-03
74	GO:0006378: mRNA polyadenylation	7.13E-03
75	GO:0010102: lateral root morphogenesis	8.57E-03
76	GO:0006807: nitrogen compound metabolic process	8.57E-03
77	GO:0009691: cytokinin biosynthetic process	8.57E-03
78	GO:0006108: malate metabolic process	8.57E-03
79	GO:0006006: glucose metabolic process	8.57E-03
80	GO:2000028: regulation of photoperiodism, flowering	8.57E-03
81	GO:0050826: response to freezing	8.57E-03
82	GO:0048440: carpel development	9.33E-03
83	GO:0002237: response to molecule of bacterial origin	9.33E-03
84	GO:0007030: Golgi organization	1.01E-02
85	GO:0019853: L-ascorbic acid biosynthetic process	1.01E-02
86	GO:0010039: response to iron ion	1.01E-02
87	GO:0034976: response to endoplasmic reticulum stress	1.09E-02
88	GO:0006487: protein N-linked glycosylation	1.17E-02
89	GO:2000377: regulation of reactive oxygen species metabolic process	1.17E-02
90	GO:0045454: cell redox homeostasis	1.25E-02
91	GO:0051302: regulation of cell division	1.26E-02
92	GO:0008299: isoprenoid biosynthetic process	1.26E-02
93	GO:0016575: histone deacetylation	1.26E-02
94	GO:0016569: covalent chromatin modification	1.28E-02
95	GO:0010431: seed maturation	1.34E-02
96	GO:0061077: chaperone-mediated protein folding	1.34E-02
97	GO:0009294: DNA mediated transformation	1.53E-02
98	GO:0042391: regulation of membrane potential	1.81E-02
99	GO:0034220: ion transmembrane transport	1.81E-02
100	GO:0055114: oxidation-reduction process	1.82E-02
101	GO:0006342: chromatin silencing	1.91E-02
102	GO:0010268: brassinosteroid homeostasis	1.91E-02
103	GO:0006662: glycerol ether metabolic process	1.91E-02
104	GO:0009646: response to absence of light	2.01E-02
105	GO:0015986: ATP synthesis coupled proton transport	2.01E-02
106	GO:0061025: membrane fusion	2.01E-02
107	GO:0009791: post-embryonic development	2.11E-02
108	GO:0008654: phospholipid biosynthetic process	2.11E-02
109	GO:0016132: brassinosteroid biosynthetic process	2.22E-02
110	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.22E-02
111	GO:1901657: glycosyl compound metabolic process	2.43E-02
112	GO:0016125: sterol metabolic process	2.54E-02
113	GO:0006470: protein dephosphorylation	2.69E-02
114	GO:0051607: defense response to virus	2.77E-02
115	GO:0016126: sterol biosynthetic process	2.88E-02
116	GO:0042128: nitrate assimilation	3.12E-02
117	GO:0006974: cellular response to DNA damage stimulus	3.12E-02
118	GO:0015995: chlorophyll biosynthetic process	3.24E-02
119	GO:0009826: unidimensional cell growth	3.50E-02
120	GO:0035556: intracellular signal transduction	3.58E-02
121	GO:0009407: toxin catabolic process	3.73E-02
122	GO:0048527: lateral root development	3.86E-02
123	GO:0010043: response to zinc ion	3.86E-02
124	GO:0034599: cellular response to oxidative stress	4.25E-02
125	GO:0016192: vesicle-mediated transport	4.72E-02
126	GO:0009744: response to sucrose	4.93E-02
127	GO:0009926: auxin polar transport	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0052668: farnesol kinase activity	0.00E+00
2	GO:0010474: glucose-1-phosphate guanylyltransferase (GDP) activity	0.00E+00
3	GO:0010473: GDP-galactose:myoinositol-1-phosphate guanylyltransferase activity	0.00E+00
4	GO:0050152: omega-amidase activity	0.00E+00
5	GO:0052671: geranylgeraniol kinase activity	0.00E+00
6	GO:0003826: alpha-ketoacid dehydrogenase activity	0.00E+00
7	GO:0004151: dihydroorotase activity	0.00E+00
8	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
9	GO:0010471: GDP-galactose:mannose-1-phosphate guanylyltransferase activity	0.00E+00
10	GO:0015391: nucleobase:cation symporter activity	0.00E+00
11	GO:0010472: GDP-galactose:glucose-1-phosphate guanylyltransferase activity	0.00E+00
12	GO:0052669: CTP:2-trans,-6-trans-farnesol kinase activity	0.00E+00
13	GO:0004147: dihydrolipoamide branched chain acyltransferase activity	0.00E+00
14	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
15	GO:0008928: mannose-1-phosphate guanylyltransferase (GDP) activity	0.00E+00
16	GO:0043754: dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity	0.00E+00
17	GO:0052670: geraniol kinase activity	0.00E+00
18	GO:0004034: aldose 1-epimerase activity	3.84E-06
19	GO:0008137: NADH dehydrogenase (ubiquinone) activity	1.19E-05
20	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	3.60E-05
21	GO:0016787: hydrolase activity	8.50E-05
22	GO:0008143: poly(A) binding	1.54E-04
23	GO:0080048: GDP-D-glucose phosphorylase activity	2.25E-04
24	GO:0046480: galactolipid galactosyltransferase activity	2.25E-04
25	GO:0080079: cellobiose glucosidase activity	2.25E-04
26	GO:0004560: alpha-L-fucosidase activity	2.25E-04
27	GO:0010475: galactose-1-phosphate guanylyltransferase (GDP) activity	2.25E-04
28	GO:0080047: GDP-L-galactose phosphorylase activity	2.25E-04
29	GO:0004452: isopentenyl-diphosphate delta-isomerase activity	2.25E-04
30	GO:0019707: protein-cysteine S-acyltransferase activity	2.25E-04
31	GO:0030941: chloroplast targeting sequence binding	2.25E-04
32	GO:0015078: hydrogen ion transmembrane transporter activity	2.44E-04
33	GO:0046961: proton-transporting ATPase activity, rotational mechanism	4.76E-04
34	GO:0004766: spermidine synthase activity	5.00E-04
35	GO:0004826: phenylalanine-tRNA ligase activity	5.00E-04
36	GO:1990585: hydroxyproline O-arabinosyltransferase activity	5.00E-04
37	GO:0004106: chorismate mutase activity	5.00E-04
38	GO:0004061: arylformamidase activity	5.00E-04
39	GO:0010331: gibberellin binding	5.00E-04
40	GO:0052692: raffinose alpha-galactosidase activity	8.13E-04
41	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	8.13E-04
42	GO:0004557: alpha-galactosidase activity	8.13E-04
43	GO:0004663: Rab geranylgeranyltransferase activity	8.13E-04
44	GO:0032403: protein complex binding	8.13E-04
45	GO:0000254: C-4 methylsterol oxidase activity	1.16E-03
46	GO:0035529: NADH pyrophosphatase activity	1.16E-03
47	GO:0016656: monodehydroascorbate reductase (NADH) activity	1.16E-03
48	GO:0000339: RNA cap binding	1.16E-03
49	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.54E-03
50	GO:0004576: oligosaccharyl transferase activity	1.54E-03
51	GO:0016407: acetyltransferase activity	1.97E-03
52	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.97E-03
53	GO:0005496: steroid binding	1.97E-03
54	GO:0004356: glutamate-ammonia ligase activity	1.97E-03
55	GO:0016853: isomerase activity	2.00E-03
56	GO:0080046: quercetin 4'-O-glucosyltransferase activity	2.43E-03
57	GO:0004605: phosphatidate cytidylyltransferase activity	2.43E-03
58	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	2.43E-03
59	GO:0051117: ATPase binding	2.43E-03
60	GO:0005261: cation channel activity	2.91E-03
61	GO:0008235: metalloexopeptidase activity	3.43E-03
62	GO:0008320: protein transmembrane transporter activity	3.43E-03
63	GO:0005085: guanyl-nucleotide exchange factor activity	3.43E-03
64	GO:0035064: methylated histone binding	3.98E-03
65	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	4.56E-03
66	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	5.16E-03
67	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	5.16E-03
68	GO:0047617: acyl-CoA hydrolase activity	5.79E-03
69	GO:0008047: enzyme activator activity	6.45E-03
70	GO:0004129: cytochrome-c oxidase activity	7.13E-03
71	GO:0004177: aminopeptidase activity	7.13E-03
72	GO:0051537: 2 iron, 2 sulfur cluster binding	7.61E-03
73	GO:0008378: galactosyltransferase activity	7.84E-03
74	GO:0000049: tRNA binding	7.84E-03
75	GO:0000976: transcription regulatory region sequence-specific DNA binding	7.84E-03
76	GO:0004089: carbonate dehydratase activity	8.57E-03
77	GO:0030552: cAMP binding	1.01E-02
78	GO:0030553: cGMP binding	1.01E-02
79	GO:0004725: protein tyrosine phosphatase activity	1.09E-02
80	GO:0051536: iron-sulfur cluster binding	1.17E-02
81	GO:0004407: histone deacetylase activity	1.17E-02
82	GO:0043130: ubiquitin binding	1.17E-02
83	GO:0005528: FK506 binding	1.17E-02
84	GO:0005216: ion channel activity	1.26E-02
85	GO:0008324: cation transmembrane transporter activity	1.26E-02
86	GO:0022857: transmembrane transporter activity	1.28E-02
87	GO:0004298: threonine-type endopeptidase activity	1.34E-02
88	GO:0015035: protein disulfide oxidoreductase activity	1.40E-02
89	GO:0003756: protein disulfide isomerase activity	1.62E-02
90	GO:0047134: protein-disulfide reductase activity	1.71E-02
91	GO:0005249: voltage-gated potassium channel activity	1.81E-02
92	GO:0030551: cyclic nucleotide binding	1.81E-02
93	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.91E-02
94	GO:0004791: thioredoxin-disulfide reductase activity	2.01E-02
95	GO:0005515: protein binding	2.20E-02
96	GO:0004197: cysteine-type endopeptidase activity	2.32E-02
97	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.43E-02
98	GO:0005506: iron ion binding	2.52E-02
99	GO:0015250: water channel activity	2.88E-02
100	GO:0051213: dioxygenase activity	2.88E-02
101	GO:0016168: chlorophyll binding	3.00E-02
102	GO:0008375: acetylglucosaminyltransferase activity	3.12E-02
103	GO:0004806: triglyceride lipase activity	3.24E-02
104	GO:0016788: hydrolase activity, acting on ester bonds	3.70E-02
105	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.73E-02
106	GO:0008422: beta-glucosidase activity	4.39E-02
107	GO:0008233: peptidase activity	4.42E-02
108	GO:0051539: 4 iron, 4 sulfur cluster binding	4.52E-02
109	GO:0004364: glutathione transferase activity	4.79E-02
110	GO:0030246: carbohydrate binding	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0097361: CIA complex	0.00E+00
2	GO:0000221: vacuolar proton-transporting V-type ATPase, V1 domain	0.00E+00
3	GO:0005747: mitochondrial respiratory chain complex I	6.61E-11
4	GO:0005829: cytosol	8.93E-06
5	GO:0005773: vacuole	9.56E-06
6	GO:0033179: proton-transporting V-type ATPase, V0 domain	3.60E-05
7	GO:0031359: integral component of chloroplast outer membrane	1.54E-04
8	GO:0045273: respiratory chain complex II	1.97E-04
9	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	1.97E-04
10	GO:0005845: mRNA cap binding complex	2.25E-04
11	GO:0005846: nuclear cap binding complex	5.00E-04
12	GO:0005838: proteasome regulatory particle	8.13E-04
13	GO:0005758: mitochondrial intermembrane space	9.55E-04
14	GO:0045271: respiratory chain complex I	1.05E-03
15	GO:0005849: mRNA cleavage factor complex	1.16E-03
16	GO:0005968: Rab-protein geranylgeranyltransferase complex	1.16E-03
17	GO:0005774: vacuolar membrane	1.18E-03
18	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	1.54E-03
19	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	1.97E-03
20	GO:0008250: oligosaccharyltransferase complex	1.97E-03
21	GO:0031209: SCAR complex	2.43E-03
22	GO:0005801: cis-Golgi network	2.91E-03
23	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	3.43E-03
24	GO:0019773: proteasome core complex, alpha-subunit complex	4.56E-03
25	GO:0005677: chromatin silencing complex	4.56E-03
26	GO:0005763: mitochondrial small ribosomal subunit	5.16E-03
27	GO:0010494: cytoplasmic stress granule	5.16E-03
28	GO:0005737: cytoplasm	6.79E-03
29	GO:0022626: cytosolic ribosome	8.38E-03
30	GO:0031966: mitochondrial membrane	8.84E-03
31	GO:0005764: lysosome	9.33E-03
32	GO:0005753: mitochondrial proton-transporting ATP synthase complex	1.01E-02
33	GO:0009536: plastid	1.11E-02
34	GO:0016607: nuclear speck	1.16E-02
35	GO:0009507: chloroplast	1.30E-02
36	GO:0005839: proteasome core complex	1.34E-02
37	GO:0005783: endoplasmic reticulum	1.73E-02
38	GO:0009523: photosystem II	2.11E-02
39	GO:0005759: mitochondrial matrix	2.14E-02
40	GO:0000785: chromatin	2.32E-02
41	GO:0071944: cell periphery	2.43E-02
42	GO:0032580: Golgi cisterna membrane	2.54E-02
43	GO:0005615: extracellular space	2.63E-02
44	GO:0005778: peroxisomal membrane	2.65E-02
45	GO:0000932: P-body	2.88E-02
46	GO:0005788: endoplasmic reticulum lumen	3.00E-02
47	GO:0009707: chloroplast outer membrane	3.48E-02
48	GO:0000325: plant-type vacuole	3.86E-02
49	GO:0005739: mitochondrion	4.67E-02
50	GO:0005789: endoplasmic reticulum membrane	4.77E-02