co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G12800

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0061635: regulation of protein complex stability	0.00E+00
2	GO:0005996: monosaccharide metabolic process	0.00E+00
3	GO:0016118: carotenoid catabolic process	0.00E+00
4	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
5	GO:0017038: protein import	0.00E+00
6	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
7	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
8	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
9	GO:0015979: photosynthesis	1.22E-10
10	GO:0006000: fructose metabolic process	1.16E-09
11	GO:0010196: nonphotochemical quenching	2.23E-07
12	GO:0016117: carotenoid biosynthetic process	2.71E-07
13	GO:0030388: fructose 1,6-bisphosphate metabolic process	3.86E-07
14	GO:0006002: fructose 6-phosphate metabolic process	5.12E-07
15	GO:0032544: plastid translation	5.12E-07
16	GO:0010206: photosystem II repair	7.30E-07
17	GO:0010205: photoinhibition	1.01E-06
18	GO:0010027: thylakoid membrane organization	1.47E-06
19	GO:0009773: photosynthetic electron transport in photosystem I	1.78E-06
20	GO:0018298: protein-chromophore linkage	2.66E-06
21	GO:0006094: gluconeogenesis	2.91E-06
22	GO:0010207: photosystem II assembly	3.64E-06
23	GO:0010021: amylopectin biosynthetic process	6.70E-06
24	GO:0009768: photosynthesis, light harvesting in photosystem I	7.79E-06
25	GO:0016123: xanthophyll biosynthetic process	1.12E-05
26	GO:0015995: chlorophyll biosynthetic process	6.95E-05
27	GO:0006438: valyl-tRNA aminoacylation	8.43E-05
28	GO:0051775: response to redox state	8.43E-05
29	GO:0080093: regulation of photorespiration	8.43E-05
30	GO:0043609: regulation of carbon utilization	8.43E-05
31	GO:0031998: regulation of fatty acid beta-oxidation	8.43E-05
32	GO:0006108: malate metabolic process	1.58E-04
33	GO:0005986: sucrose biosynthetic process	1.58E-04
34	GO:0019253: reductive pentose-phosphate cycle	1.80E-04
35	GO:0035304: regulation of protein dephosphorylation	2.00E-04
36	GO:0016124: xanthophyll catabolic process	2.00E-04
37	GO:0006432: phenylalanyl-tRNA aminoacylation	2.00E-04
38	GO:0018026: peptidyl-lysine monomethylation	2.00E-04
39	GO:0090342: regulation of cell aging	2.00E-04
40	GO:0097054: L-glutamate biosynthetic process	2.00E-04
41	GO:0016121: carotene catabolic process	2.00E-04
42	GO:0006636: unsaturated fatty acid biosynthetic process	2.29E-04
43	GO:0006418: tRNA aminoacylation for protein translation	2.83E-04
44	GO:0010581: regulation of starch biosynthetic process	3.35E-04
45	GO:0016050: vesicle organization	3.35E-04
46	GO:0006107: oxaloacetate metabolic process	4.84E-04
47	GO:0006537: glutamate biosynthetic process	4.84E-04
48	GO:0055114: oxidation-reduction process	5.01E-04
49	GO:0019252: starch biosynthetic process	5.85E-04
50	GO:0045727: positive regulation of translation	6.44E-04
51	GO:0051205: protein insertion into membrane	6.44E-04
52	GO:0006021: inositol biosynthetic process	6.44E-04
53	GO:0006734: NADH metabolic process	6.44E-04
54	GO:0010109: regulation of photosynthesis	6.44E-04
55	GO:0019676: ammonia assimilation cycle	6.44E-04
56	GO:0042742: defense response to bacterium	7.13E-04
57	GO:0009793: embryo development ending in seed dormancy	7.83E-04
58	GO:0016120: carotene biosynthetic process	8.14E-04
59	GO:0032543: mitochondrial translation	8.14E-04
60	GO:0010236: plastoquinone biosynthetic process	8.14E-04
61	GO:0045038: protein import into chloroplast thylakoid membrane	8.14E-04
62	GO:0006097: glyoxylate cycle	8.14E-04
63	GO:0009735: response to cytokinin	9.92E-04
64	GO:0009635: response to herbicide	9.94E-04
65	GO:0010304: PSII associated light-harvesting complex II catabolic process	9.94E-04
66	GO:0042549: photosystem II stabilization	9.94E-04
67	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	9.94E-04
68	GO:0009955: adaxial/abaxial pattern specification	1.18E-03
69	GO:1901259: chloroplast rRNA processing	1.18E-03
70	GO:0009409: response to cold	1.20E-03
71	GO:0009658: chloroplast organization	1.36E-03
72	GO:0009772: photosynthetic electron transport in photosystem II	1.39E-03
73	GO:0071446: cellular response to salicylic acid stimulus	1.39E-03
74	GO:0009769: photosynthesis, light harvesting in photosystem II	1.39E-03
75	GO:0006099: tricarboxylic acid cycle	1.50E-03
76	GO:0048564: photosystem I assembly	1.60E-03
77	GO:0005978: glycogen biosynthetic process	1.60E-03
78	GO:0006605: protein targeting	1.60E-03
79	GO:0019430: removal of superoxide radicals	1.83E-03
80	GO:2000031: regulation of salicylic acid mediated signaling pathway	1.83E-03
81	GO:0010114: response to red light	1.84E-03
82	GO:0009744: response to sucrose	1.84E-03
83	GO:0009644: response to high light intensity	1.99E-03
84	GO:0006098: pentose-phosphate shunt	2.06E-03
85	GO:0010380: regulation of chlorophyll biosynthetic process	2.30E-03
86	GO:0005982: starch metabolic process	2.30E-03
87	GO:0009688: abscisic acid biosynthetic process	2.56E-03
88	GO:0048829: root cap development	2.56E-03
89	GO:0006415: translational termination	2.82E-03
90	GO:0019684: photosynthesis, light reaction	2.82E-03
91	GO:0072593: reactive oxygen species metabolic process	2.82E-03
92	GO:0009073: aromatic amino acid family biosynthetic process	2.82E-03
93	GO:0043085: positive regulation of catalytic activity	2.82E-03
94	GO:0000272: polysaccharide catabolic process	2.82E-03
95	GO:0009750: response to fructose	2.82E-03
96	GO:0018119: peptidyl-cysteine S-nitrosylation	2.82E-03
97	GO:0006096: glycolytic process	2.91E-03
98	GO:0005983: starch catabolic process	3.09E-03
99	GO:0045037: protein import into chloroplast stroma	3.09E-03
100	GO:0010628: positive regulation of gene expression	3.37E-03
101	GO:0006006: glucose metabolic process	3.37E-03
102	GO:0009767: photosynthetic electron transport chain	3.37E-03
103	GO:0005985: sucrose metabolic process	3.95E-03
104	GO:0006633: fatty acid biosynthetic process	5.48E-03
105	GO:0016226: iron-sulfur cluster assembly	5.55E-03
106	GO:0007623: circadian rhythm	6.01E-03
107	GO:0006284: base-excision repair	6.24E-03
108	GO:0042631: cellular response to water deprivation	6.97E-03
109	GO:0010182: sugar mediated signaling pathway	7.34E-03
110	GO:0009646: response to absence of light	7.72E-03
111	GO:0008654: phospholipid biosynthetic process	8.10E-03
112	GO:0030163: protein catabolic process	9.30E-03
113	GO:0010090: trichome morphogenesis	9.30E-03
114	GO:0051607: defense response to virus	1.06E-02
115	GO:0016311: dephosphorylation	1.28E-02
116	GO:0045454: cell redox homeostasis	1.38E-02
117	GO:0009834: plant-type secondary cell wall biogenesis	1.42E-02
118	GO:0006499: N-terminal protein myristoylation	1.42E-02
119	GO:0010218: response to far red light	1.42E-02
120	GO:0009631: cold acclimation	1.47E-02
121	GO:0010119: regulation of stomatal movement	1.47E-02
122	GO:0009853: photorespiration	1.57E-02
123	GO:0009637: response to blue light	1.57E-02
124	GO:0006281: DNA repair	1.71E-02
125	GO:0009408: response to heat	1.71E-02
126	GO:0042542: response to hydrogen peroxide	1.83E-02
127	GO:0031347: regulation of defense response	2.15E-02
128	GO:0006364: rRNA processing	2.32E-02
129	GO:0046686: response to cadmium ion	2.57E-02
130	GO:0009416: response to light stimulus	3.04E-02
131	GO:0045893: positive regulation of transcription, DNA-templated	3.48E-02
132	GO:0009737: response to abscisic acid	3.79E-02
133	GO:0042744: hydrogen peroxide catabolic process	3.84E-02
134	GO:0016036: cellular response to phosphate starvation	4.19E-02
135	GO:0040008: regulation of growth	4.26E-02
136	GO:0010468: regulation of gene expression	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0010356: homogentisate geranylgeranyltransferase activity	0.00E+00
2	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
3	GO:0016166: phytoene dehydrogenase activity	0.00E+00
4	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
5	GO:0010357: homogentisate solanesyltransferase activity	0.00E+00
6	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
7	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
8	GO:0004823: leucine-tRNA ligase activity	0.00E+00
9	GO:0046408: chlorophyll synthetase activity	0.00E+00
10	GO:0010355: homogentisate farnesyltransferase activity	0.00E+00
11	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
12	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.86E-07
13	GO:0016851: magnesium chelatase activity	3.52E-06
14	GO:0031409: pigment binding	5.43E-06
15	GO:0016615: malate dehydrogenase activity	1.70E-05
16	GO:0030060: L-malate dehydrogenase activity	2.44E-05
17	GO:0016168: chlorophyll binding	5.89E-05
18	GO:0071949: FAD binding	6.88E-05
19	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	8.43E-05
20	GO:0010242: oxygen evolving activity	8.43E-05
21	GO:0045485: omega-6 fatty acid desaturase activity	8.43E-05
22	GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity	8.43E-05
23	GO:0004832: valine-tRNA ligase activity	8.43E-05
24	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	8.43E-05
25	GO:0008746: NAD(P)+ transhydrogenase activity	8.43E-05
26	GO:0016041: glutamate synthase (ferredoxin) activity	8.43E-05
27	GO:0008266: poly(U) RNA binding	1.80E-04
28	GO:0033201: alpha-1,4-glucan synthase activity	2.00E-04
29	GO:0004312: fatty acid synthase activity	2.00E-04
30	GO:0004826: phenylalanine-tRNA ligase activity	2.00E-04
31	GO:0004512: inositol-3-phosphate synthase activity	2.00E-04
32	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	2.00E-04
33	GO:0003844: 1,4-alpha-glucan branching enzyme activity	2.00E-04
34	GO:0008967: phosphoglycolate phosphatase activity	2.00E-04
35	GO:0010291: carotene beta-ring hydroxylase activity	2.00E-04
36	GO:0010297: heteropolysaccharide binding	2.00E-04
37	GO:0043169: cation binding	3.35E-04
38	GO:0004373: glycogen (starch) synthase activity	3.35E-04
39	GO:0003913: DNA photolyase activity	3.35E-04
40	GO:0002161: aminoacyl-tRNA editing activity	3.35E-04
41	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	3.35E-04
42	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	3.35E-04
43	GO:0015462: ATPase-coupled protein transmembrane transporter activity	3.35E-04
44	GO:0004324: ferredoxin-NADP+ reductase activity	3.35E-04
45	GO:0004812: aminoacyl-tRNA ligase activity	4.38E-04
46	GO:0016149: translation release factor activity, codon specific	4.84E-04
47	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	4.84E-04
48	GO:0019843: rRNA binding	5.30E-04
49	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	5.48E-04
50	GO:0009011: starch synthase activity	6.44E-04
51	GO:0016279: protein-lysine N-methyltransferase activity	6.44E-04
52	GO:0004040: amidase activity	8.14E-04
53	GO:0003959: NADPH dehydrogenase activity	8.14E-04
54	GO:0051538: 3 iron, 4 sulfur cluster binding	8.14E-04
55	GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity	8.14E-04
56	GO:0008725: DNA-3-methyladenine glycosylase activity	8.14E-04
57	GO:0004332: fructose-bisphosphate aldolase activity	9.94E-04
58	GO:2001070: starch binding	9.94E-04
59	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.18E-03
60	GO:0005515: protein binding	1.21E-03
61	GO:0009881: photoreceptor activity	1.39E-03
62	GO:0003747: translation release factor activity	2.06E-03
63	GO:0008047: enzyme activator activity	2.56E-03
64	GO:0004161: dimethylallyltranstransferase activity	2.82E-03
65	GO:0000049: tRNA binding	3.09E-03
66	GO:0031072: heat shock protein binding	3.37E-03
67	GO:0051536: iron-sulfur cluster binding	4.57E-03
68	GO:0016491: oxidoreductase activity	5.00E-03
69	GO:0004176: ATP-dependent peptidase activity	5.22E-03
70	GO:0003756: protein disulfide isomerase activity	6.24E-03
71	GO:0050662: coenzyme binding	7.72E-03
72	GO:0004791: thioredoxin-disulfide reductase activity	7.72E-03
73	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	9.30E-03
74	GO:0008237: metallopeptidase activity	1.01E-02
75	GO:0005524: ATP binding	1.10E-02
76	GO:0004497: monooxygenase activity	1.16E-02
77	GO:0008236: serine-type peptidase activity	1.28E-02
78	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.33E-02
79	GO:0046872: metal ion binding	1.35E-02
80	GO:0004222: metalloendopeptidase activity	1.42E-02
81	GO:0003746: translation elongation factor activity	1.57E-02
82	GO:0050661: NADP binding	1.72E-02
83	GO:0005198: structural molecule activity	2.04E-02
84	GO:0051287: NAD binding	2.15E-02
85	GO:0020037: heme binding	2.61E-02
86	GO:0051082: unfolded protein binding	2.98E-02
87	GO:0004252: serine-type endopeptidase activity	3.77E-02
88	GO:0008565: protein transporter activity	3.98E-02
89	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.00E-02
90	GO:0019825: oxygen binding	4.31E-02
91	GO:0003743: translation initiation factor activity	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0009783: photosystem II antenna complex	0.00E+00
2	GO:0042579: microbody	0.00E+00
3	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
4	GO:0009507: chloroplast	2.56E-42
5	GO:0009534: chloroplast thylakoid	2.05E-32
6	GO:0009570: chloroplast stroma	1.20E-31
7	GO:0009941: chloroplast envelope	9.68E-28
8	GO:0009535: chloroplast thylakoid membrane	3.23E-21
9	GO:0009579: thylakoid	1.05E-15
10	GO:0010287: plastoglobule	1.42E-09
11	GO:0009508: plastid chromosome	2.52E-08
12	GO:0031977: thylakoid lumen	1.62E-07
13	GO:0009295: nucleoid	1.13E-06
14	GO:0031969: chloroplast membrane	1.40E-06
15	GO:0010007: magnesium chelatase complex	1.47E-06
16	GO:0048046: apoplast	2.72E-06
17	GO:0042651: thylakoid membrane	7.79E-06
18	GO:0009522: photosystem I	2.40E-05
19	GO:0009706: chloroplast inner membrane	2.95E-05
20	GO:0009501: amyloplast	4.35E-05
21	GO:0010319: stromule	4.51E-05
22	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	8.43E-05
23	GO:0016020: membrane	1.69E-04
24	GO:0030095: chloroplast photosystem II	1.80E-04
25	GO:0000427: plastid-encoded plastid RNA polymerase complex	2.00E-04
26	GO:0030076: light-harvesting complex	2.04E-04
27	GO:0009654: photosystem II oxygen evolving complex	2.83E-04
28	GO:0009509: chromoplast	3.35E-04
29	GO:0009543: chloroplast thylakoid lumen	5.30E-04
30	GO:0019898: extrinsic component of membrane	5.85E-04
31	GO:0009517: PSII associated light-harvesting complex II	6.44E-04
32	GO:0055035: plastid thylakoid membrane	8.14E-04
33	GO:0009533: chloroplast stromal thylakoid	1.39E-03
34	GO:0042644: chloroplast nucleoid	2.06E-03
35	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.06E-03
36	GO:0005763: mitochondrial small ribosomal subunit	2.06E-03
37	GO:0009536: plastid	4.49E-03
38	GO:0005759: mitochondrial matrix	5.48E-03
39	GO:0009523: photosystem II	8.10E-03
40	GO:0005840: ribosome	1.56E-02
41	GO:0005777: peroxisome	3.48E-02
42	GO:0005623: cell	3.57E-02