co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G12530

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0036172: thiamine salvage	0.00E+00
2	GO:0006721: terpenoid metabolic process	0.00E+00
3	GO:0009236: cobalamin biosynthetic process	0.00E+00
4	GO:0034053: modulation by symbiont of host defense-related programmed cell death	0.00E+00
5	GO:0045740: positive regulation of DNA replication	0.00E+00
6	GO:0006720: isoprenoid metabolic process	0.00E+00
7	GO:0048870: cell motility	0.00E+00
8	GO:0032780: negative regulation of ATPase activity	0.00E+00
9	GO:0015822: ornithine transport	0.00E+00
10	GO:0016487: farnesol metabolic process	0.00E+00
11	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	1.56E-08
12	GO:0009853: photorespiration	2.74E-07
13	GO:0048527: lateral root development	8.94E-05
14	GO:0016226: iron-sulfur cluster assembly	1.29E-04
15	GO:0006012: galactose metabolic process	1.47E-04
16	GO:0035556: intracellular signal transduction	2.44E-04
17	GO:0043407: negative regulation of MAP kinase activity	2.65E-04
18	GO:0031468: nuclear envelope reassembly	2.65E-04
19	GO:0048438: floral whorl development	2.65E-04
20	GO:0000066: mitochondrial ornithine transport	2.65E-04
21	GO:0019354: siroheme biosynthetic process	2.65E-04
22	GO:0009240: isopentenyl diphosphate biosynthetic process	2.65E-04
23	GO:0030010: establishment of cell polarity	5.83E-04
24	GO:0007163: establishment or maintenance of cell polarity	5.83E-04
25	GO:0006432: phenylalanyl-tRNA aminoacylation	5.83E-04
26	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	5.83E-04
27	GO:2000071: regulation of defense response by callose deposition	5.83E-04
28	GO:0006501: C-terminal protein lipidation	5.83E-04
29	GO:0010220: positive regulation of vernalization response	5.83E-04
30	GO:0019441: tryptophan catabolic process to kynurenine	5.83E-04
31	GO:0050992: dimethylallyl diphosphate biosynthetic process	5.83E-04
32	GO:0034051: negative regulation of plant-type hypersensitive response	9.47E-04
33	GO:0043617: cellular response to sucrose starvation	9.47E-04
34	GO:0046417: chorismate metabolic process	9.47E-04
35	GO:0015940: pantothenate biosynthetic process	9.47E-04
36	GO:0071492: cellular response to UV-A	9.47E-04
37	GO:0006760: folic acid-containing compound metabolic process	9.47E-04
38	GO:0034599: cellular response to oxidative stress	9.91E-04
39	GO:0006979: response to oxidative stress	1.09E-03
40	GO:0006487: protein N-linked glycosylation	1.20E-03
41	GO:0055114: oxidation-reduction process	1.25E-03
42	GO:0009647: skotomorphogenesis	1.35E-03
43	GO:0009399: nitrogen fixation	1.35E-03
44	GO:0009963: positive regulation of flavonoid biosynthetic process	1.35E-03
45	GO:1901332: negative regulation of lateral root development	1.35E-03
46	GO:0006516: glycoprotein catabolic process	1.35E-03
47	GO:0006107: oxaloacetate metabolic process	1.35E-03
48	GO:0015992: proton transport	1.44E-03
49	GO:0061077: chaperone-mediated protein folding	1.44E-03
50	GO:0006221: pyrimidine nucleotide biosynthetic process	1.81E-03
51	GO:0042594: response to starvation	1.81E-03
52	GO:0009649: entrainment of circadian clock	1.81E-03
53	GO:0006749: glutathione metabolic process	1.81E-03
54	GO:0044205: 'de novo' UMP biosynthetic process	1.81E-03
55	GO:0034613: cellular protein localization	1.81E-03
56	GO:0044804: nucleophagy	1.81E-03
57	GO:0006542: glutamine biosynthetic process	1.81E-03
58	GO:0009755: hormone-mediated signaling pathway	1.81E-03
59	GO:0070534: protein K63-linked ubiquitination	1.81E-03
60	GO:0015976: carbon utilization	1.81E-03
61	GO:0071486: cellular response to high light intensity	1.81E-03
62	GO:0009765: photosynthesis, light harvesting	1.81E-03
63	GO:0071249: cellular response to nitrate	1.81E-03
64	GO:0015991: ATP hydrolysis coupled proton transport	2.19E-03
65	GO:0000422: mitophagy	2.31E-03
66	GO:0030041: actin filament polymerization	2.31E-03
67	GO:0046283: anthocyanin-containing compound metabolic process	2.31E-03
68	GO:0009229: thiamine diphosphate biosynthetic process	2.31E-03
69	GO:0006520: cellular amino acid metabolic process	2.36E-03
70	GO:0006662: glycerol ether metabolic process	2.36E-03
71	GO:0000045: autophagosome assembly	2.85E-03
72	GO:0006796: phosphate-containing compound metabolic process	2.85E-03
73	GO:0007035: vacuolar acidification	2.85E-03
74	GO:0009228: thiamine biosynthetic process	2.85E-03
75	GO:0009117: nucleotide metabolic process	2.85E-03
76	GO:0000060: protein import into nucleus, translocation	2.85E-03
77	GO:0006301: postreplication repair	2.85E-03
78	GO:0006777: Mo-molybdopterin cofactor biosynthetic process	2.85E-03
79	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	2.85E-03
80	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.90E-03
81	GO:0010090: trichome morphogenesis	3.30E-03
82	GO:0010076: maintenance of floral meristem identity	3.43E-03
83	GO:0010077: maintenance of inflorescence meristem identity	3.43E-03
84	GO:0009396: folic acid-containing compound biosynthetic process	4.04E-03
85	GO:0000082: G1/S transition of mitotic cell cycle	4.04E-03
86	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	4.04E-03
87	GO:0022904: respiratory electron transport chain	4.04E-03
88	GO:0007050: cell cycle arrest	4.04E-03
89	GO:0009787: regulation of abscisic acid-activated signaling pathway	4.69E-03
90	GO:0006506: GPI anchor biosynthetic process	4.69E-03
91	GO:0000028: ribosomal small subunit assembly	4.69E-03
92	GO:0045010: actin nucleation	4.69E-03
93	GO:0009880: embryonic pattern specification	5.37E-03
94	GO:0010204: defense response signaling pathway, resistance gene-independent	5.37E-03
95	GO:0010311: lateral root formation	5.74E-03
96	GO:0006754: ATP biosynthetic process	6.09E-03
97	GO:0000902: cell morphogenesis	6.09E-03
98	GO:0008152: metabolic process	6.25E-03
99	GO:0042761: very long-chain fatty acid biosynthetic process	6.83E-03
100	GO:0035999: tetrahydrofolate interconversion	6.83E-03
101	GO:0006995: cellular response to nitrogen starvation	7.61E-03
102	GO:0009870: defense response signaling pathway, resistance gene-dependent	7.61E-03
103	GO:0000103: sulfate assimilation	7.61E-03
104	GO:0009641: shade avoidance	7.61E-03
105	GO:0009682: induced systemic resistance	8.42E-03
106	GO:0052544: defense response by callose deposition in cell wall	8.42E-03
107	GO:0009073: aromatic amino acid family biosynthetic process	8.42E-03
108	GO:0010015: root morphogenesis	8.42E-03
109	GO:0010152: pollen maturation	9.26E-03
110	GO:0010582: floral meristem determinacy	9.26E-03
111	GO:0010102: lateral root morphogenesis	1.01E-02
112	GO:0006807: nitrogen compound metabolic process	1.01E-02
113	GO:0009691: cytokinin biosynthetic process	1.01E-02
114	GO:0006108: malate metabolic process	1.01E-02
115	GO:0006006: glucose metabolic process	1.01E-02
116	GO:0006094: gluconeogenesis	1.01E-02
117	GO:0006829: zinc II ion transport	1.01E-02
118	GO:0048440: carpel development	1.10E-02
119	GO:0002237: response to molecule of bacterial origin	1.10E-02
120	GO:0007030: Golgi organization	1.20E-02
121	GO:0019853: L-ascorbic acid biosynthetic process	1.20E-02
122	GO:0010039: response to iron ion	1.20E-02
123	GO:0010224: response to UV-B	1.25E-02
124	GO:0034976: response to endoplasmic reticulum stress	1.29E-02
125	GO:0000162: tryptophan biosynthetic process	1.29E-02
126	GO:2000377: regulation of reactive oxygen species metabolic process	1.39E-02
127	GO:0008299: isoprenoid biosynthetic process	1.49E-02
128	GO:0009737: response to abscisic acid	1.58E-02
129	GO:0010431: seed maturation	1.59E-02
130	GO:0019915: lipid storage	1.59E-02
131	GO:0016569: covalent chromatin modification	1.62E-02
132	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.70E-02
133	GO:0045454: cell redox homeostasis	1.70E-02
134	GO:0015031: protein transport	1.79E-02
135	GO:0009693: ethylene biosynthetic process	1.81E-02
136	GO:0048443: stamen development	1.92E-02
137	GO:0032259: methylation	2.09E-02
138	GO:0080022: primary root development	2.15E-02
139	GO:0010118: stomatal movement	2.15E-02
140	GO:0010154: fruit development	2.26E-02
141	GO:0010182: sugar mediated signaling pathway	2.26E-02
142	GO:0009058: biosynthetic process	2.28E-02
143	GO:0015986: ATP synthesis coupled proton transport	2.38E-02
144	GO:0061025: membrane fusion	2.38E-02
145	GO:0009646: response to absence of light	2.38E-02
146	GO:0005975: carbohydrate metabolic process	2.41E-02
147	GO:0048825: cotyledon development	2.51E-02
148	GO:0009749: response to glucose	2.51E-02
149	GO:0008654: phospholipid biosynthetic process	2.51E-02
150	GO:0002229: defense response to oomycetes	2.63E-02
151	GO:0010193: response to ozone	2.63E-02
152	GO:0010150: leaf senescence	2.98E-02
153	GO:0006914: autophagy	3.02E-02
154	GO:0016126: sterol biosynthetic process	3.42E-02
155	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.56E-02
156	GO:0042742: defense response to bacterium	3.66E-02
157	GO:0009651: response to salt stress	3.69E-02
158	GO:0006906: vesicle fusion	3.70E-02
159	GO:0042128: nitrate assimilation	3.70E-02
160	GO:0015995: chlorophyll biosynthetic process	3.84E-02
161	GO:0048573: photoperiodism, flowering	3.84E-02
162	GO:0009826: unidimensional cell growth	4.43E-02
163	GO:0006499: N-terminal protein myristoylation	4.43E-02
164	GO:0009407: toxin catabolic process	4.43E-02
165	GO:0010119: regulation of stomatal movement	4.58E-02
166	GO:0010043: response to zinc ion	4.58E-02
167	GO:0009867: jasmonic acid mediated signaling pathway	4.88E-02
168	GO:0045087: innate immune response	4.88E-02
169	GO:0006970: response to osmotic stress	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0050152: omega-amidase activity	0.00E+00
2	GO:0052671: geranylgeraniol kinase activity	0.00E+00
3	GO:0003826: alpha-ketoacid dehydrogenase activity	0.00E+00
4	GO:0051266: sirohydrochlorin ferrochelatase activity	0.00E+00
5	GO:0010472: GDP-galactose:glucose-1-phosphate guanylyltransferase activity	0.00E+00
6	GO:0061799: cyclic pyranopterin monophosphate synthase activity	0.00E+00
7	GO:0004151: dihydroorotase activity	0.00E+00
8	GO:0010471: GDP-galactose:mannose-1-phosphate guanylyltransferase activity	0.00E+00
9	GO:0052669: CTP:2-trans,-6-trans-farnesol kinase activity	0.00E+00
10	GO:0047886: farnesol dehydrogenase activity	0.00E+00
11	GO:0004147: dihydrolipoamide branched chain acyltransferase activity	0.00E+00
12	GO:0016852: sirohydrochlorin cobaltochelatase activity	0.00E+00
13	GO:0042030: ATPase inhibitor activity	0.00E+00
14	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
15	GO:0008928: mannose-1-phosphate guanylyltransferase (GDP) activity	0.00E+00
16	GO:0043754: dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity	0.00E+00
17	GO:0052670: geraniol kinase activity	0.00E+00
18	GO:0052668: farnesol kinase activity	0.00E+00
19	GO:0010474: glucose-1-phosphate guanylyltransferase (GDP) activity	0.00E+00
20	GO:0010473: GDP-galactose:myoinositol-1-phosphate guanylyltransferase activity	0.00E+00
21	GO:0008137: NADH dehydrogenase (ubiquinone) activity	6.53E-07
22	GO:0004034: aldose 1-epimerase activity	5.79E-06
23	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	1.10E-04
24	GO:0010475: galactose-1-phosphate guanylyltransferase (GDP) activity	2.65E-04
25	GO:0080047: GDP-L-galactose phosphorylase activity	2.65E-04
26	GO:0004048: anthranilate phosphoribosyltransferase activity	2.65E-04
27	GO:0004452: isopentenyl-diphosphate delta-isomerase activity	2.65E-04
28	GO:0019707: protein-cysteine S-acyltransferase activity	2.65E-04
29	GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity	2.65E-04
30	GO:0080048: GDP-D-glucose phosphorylase activity	2.65E-04
31	GO:0033549: MAP kinase phosphatase activity	2.65E-04
32	GO:0004560: alpha-L-fucosidase activity	2.65E-04
33	GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity	2.65E-04
34	GO:0015078: hydrogen ion transmembrane transporter activity	3.10E-04
35	GO:0004106: chorismate mutase activity	5.83E-04
36	GO:0000064: L-ornithine transmembrane transporter activity	5.83E-04
37	GO:0004826: phenylalanine-tRNA ligase activity	5.83E-04
38	GO:0004061: arylformamidase activity	5.83E-04
39	GO:0019172: glyoxalase III activity	5.83E-04
40	GO:0004089: carbonate dehydratase activity	7.76E-04
41	GO:0050897: cobalt ion binding	8.37E-04
42	GO:0004557: alpha-galactosidase activity	9.47E-04
43	GO:0032403: protein complex binding	9.47E-04
44	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	9.47E-04
45	GO:0052692: raffinose alpha-galactosidase activity	9.47E-04
46	GO:0051536: iron-sulfur cluster binding	1.20E-03
47	GO:0005528: FK506 binding	1.20E-03
48	GO:0003824: catalytic activity	1.31E-03
49	GO:0035529: NADH pyrophosphatase activity	1.35E-03
50	GO:0016656: monodehydroascorbate reductase (NADH) activity	1.35E-03
51	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.35E-03
52	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	1.35E-03
53	GO:0000254: C-4 methylsterol oxidase activity	1.35E-03
54	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.81E-03
55	GO:0004576: oligosaccharyl transferase activity	1.81E-03
56	GO:0019776: Atg8 ligase activity	1.81E-03
57	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.81E-03
58	GO:0010011: auxin binding	1.81E-03
59	GO:0016787: hydrolase activity	1.92E-03
60	GO:0047134: protein-disulfide reductase activity	2.03E-03
61	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	2.31E-03
62	GO:0016651: oxidoreductase activity, acting on NAD(P)H	2.31E-03
63	GO:0005496: steroid binding	2.31E-03
64	GO:0004356: glutamate-ammonia ligase activity	2.31E-03
65	GO:0016407: acetyltransferase activity	2.31E-03
66	GO:0004791: thioredoxin-disulfide reductase activity	2.53E-03
67	GO:0016853: isomerase activity	2.53E-03
68	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	2.85E-03
69	GO:0051117: ATPase binding	2.85E-03
70	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	2.85E-03
71	GO:0080046: quercetin 4'-O-glucosyltransferase activity	2.85E-03
72	GO:0004605: phosphatidate cytidylyltransferase activity	2.85E-03
73	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.30E-03
74	GO:0070300: phosphatidic acid binding	3.43E-03
75	GO:0004427: inorganic diphosphatase activity	4.04E-03
76	GO:0008143: poly(A) binding	4.04E-03
77	GO:0008320: protein transmembrane transporter activity	4.04E-03
78	GO:0005085: guanyl-nucleotide exchange factor activity	4.04E-03
79	GO:0035064: methylated histone binding	4.69E-03
80	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	4.69E-03
81	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	6.09E-03
82	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	6.09E-03
83	GO:0005507: copper ion binding	6.42E-03
84	GO:0001055: RNA polymerase II activity	6.83E-03
85	GO:0008047: enzyme activator activity	7.61E-03
86	GO:0051539: 4 iron, 4 sulfur cluster binding	7.90E-03
87	GO:0042802: identical protein binding	7.98E-03
88	GO:0004129: cytochrome-c oxidase activity	8.42E-03
89	GO:0046961: proton-transporting ATPase activity, rotational mechanism	8.42E-03
90	GO:0001054: RNA polymerase I activity	8.42E-03
91	GO:0001056: RNA polymerase III activity	9.26E-03
92	GO:0000049: tRNA binding	9.26E-03
93	GO:0008168: methyltransferase activity	9.77E-03
94	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.04E-02
95	GO:0004725: protein tyrosine phosphatase activity	1.29E-02
96	GO:0003714: transcription corepressor activity	1.39E-02
97	GO:0043130: ubiquitin binding	1.39E-02
98	GO:0004298: threonine-type endopeptidase activity	1.59E-02
99	GO:0022857: transmembrane transporter activity	1.62E-02
100	GO:0015035: protein disulfide oxidoreductase activity	1.78E-02
101	GO:0004386: helicase activity	1.88E-02
102	GO:0003756: protein disulfide isomerase activity	1.92E-02
103	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.26E-02
104	GO:0046873: metal ion transmembrane transporter activity	2.26E-02
105	GO:0050662: coenzyme binding	2.38E-02
106	GO:0030170: pyridoxal phosphate binding	2.40E-02
107	GO:0048038: quinone binding	2.63E-02
108	GO:0008483: transaminase activity	3.15E-02
109	GO:0016597: amino acid binding	3.28E-02
110	GO:0016168: chlorophyll binding	3.56E-02
111	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.70E-02
112	GO:0004683: calmodulin-dependent protein kinase activity	3.84E-02
113	GO:0008270: zinc ion binding	4.06E-02
114	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.43E-02
115	GO:0000166: nucleotide binding	4.49E-02
116	GO:0004601: peroxidase activity	4.60E-02
117	GO:0016788: hydrolase activity, acting on ester bonds	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0097361: CIA complex	0.00E+00
2	GO:0005747: mitochondrial respiratory chain complex I	8.96E-17
3	GO:0045271: respiratory chain complex I	6.58E-08
4	GO:0031966: mitochondrial membrane	2.23E-05
5	GO:0033179: proton-transporting V-type ATPase, V0 domain	4.76E-05
6	GO:0005829: cytosol	1.46E-04
7	GO:0000152: nuclear ubiquitin ligase complex	2.65E-04
8	GO:0005662: DNA replication factor A complex	2.65E-04
9	GO:0009507: chloroplast	3.91E-04
10	GO:0034274: Atg12-Atg5-Atg16 complex	5.83E-04
11	GO:0005783: endoplasmic reticulum	8.92E-04
12	GO:0005838: proteasome regulatory particle	9.47E-04
13	GO:0005753: mitochondrial proton-transporting ATP synthase complex	9.75E-04
14	GO:0005737: cytoplasm	1.00E-03
15	GO:0005758: mitochondrial intermembrane space	1.20E-03
16	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	1.81E-03
17	GO:0031372: UBC13-MMS2 complex	1.81E-03
18	GO:0008250: oligosaccharyltransferase complex	2.31E-03
19	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	2.31E-03
20	GO:0005739: mitochondrion	2.36E-03
21	GO:0005773: vacuole	2.59E-03
22	GO:0005789: endoplasmic reticulum membrane	2.71E-03
23	GO:0031209: SCAR complex	2.85E-03
24	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	2.85E-03
25	GO:0000974: Prp19 complex	2.85E-03
26	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	4.04E-03
27	GO:0009501: amyloplast	4.69E-03
28	GO:0045273: respiratory chain complex II	4.69E-03
29	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	4.69E-03
30	GO:0005759: mitochondrial matrix	5.22E-03
31	GO:0034045: pre-autophagosomal structure membrane	5.37E-03
32	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.09E-03
33	GO:0031901: early endosome membrane	6.09E-03
34	GO:0005763: mitochondrial small ribosomal subunit	6.09E-03
35	GO:0005736: DNA-directed RNA polymerase I complex	6.09E-03
36	GO:0016604: nuclear body	6.83E-03
37	GO:0005666: DNA-directed RNA polymerase III complex	6.83E-03
38	GO:0071011: precatalytic spliceosome	6.83E-03
39	GO:0071013: catalytic step 2 spliceosome	8.42E-03
40	GO:0005665: DNA-directed RNA polymerase II, core complex	9.26E-03
41	GO:0005856: cytoskeleton	1.01E-02
42	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.15E-02
43	GO:0000419: DNA-directed RNA polymerase V complex	1.29E-02
44	GO:0016607: nuclear speck	1.48E-02
45	GO:0070469: respiratory chain	1.49E-02
46	GO:0005774: vacuolar membrane	1.57E-02
47	GO:0005839: proteasome core complex	1.59E-02
48	GO:0009536: plastid	1.68E-02
49	GO:0009523: photosystem II	2.51E-02
50	GO:0071944: cell periphery	2.88E-02
51	GO:0005730: nucleolus	2.89E-02
52	GO:0032580: Golgi cisterna membrane	3.02E-02
53	GO:0005778: peroxisomal membrane	3.15E-02
54	GO:0010319: stromule	3.15E-02
55	GO:0005788: endoplasmic reticulum lumen	3.56E-02
56	GO:0005643: nuclear pore	4.13E-02