co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G12090

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
2	GO:0002184: cytoplasmic translational termination	0.00E+00
3	GO:0030155: regulation of cell adhesion	0.00E+00
4	GO:0090706: specification of plant organ position	0.00E+00
5	GO:0000025: maltose catabolic process	0.00E+00
6	GO:0007172: signal complex assembly	0.00E+00
7	GO:0090279: regulation of calcium ion import	0.00E+00
8	GO:0080127: fruit septum development	0.00E+00
9	GO:0015717: triose phosphate transport	0.00E+00
10	GO:1905177: tracheary element differentiation	0.00E+00
11	GO:0071474: cellular hyperosmotic response	0.00E+00
12	GO:0009773: photosynthetic electron transport in photosystem I	1.33E-05
13	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.57E-05
14	GO:0005983: starch catabolic process	1.69E-05
15	GO:0015979: photosynthesis	5.59E-05
16	GO:0010450: inflorescence meristem growth	1.98E-04
17	GO:0000023: maltose metabolic process	1.98E-04
18	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	1.98E-04
19	GO:0005980: glycogen catabolic process	1.98E-04
20	GO:0010480: microsporocyte differentiation	1.98E-04
21	GO:0010028: xanthophyll cycle	1.98E-04
22	GO:0009409: response to cold	2.14E-04
23	GO:0051262: protein tetramerization	4.43E-04
24	GO:0005976: polysaccharide metabolic process	4.43E-04
25	GO:0031648: protein destabilization	4.43E-04
26	GO:0016122: xanthophyll metabolic process	4.43E-04
27	GO:0006521: regulation of cellular amino acid metabolic process	4.43E-04
28	GO:0030388: fructose 1,6-bisphosphate metabolic process	4.43E-04
29	GO:0006094: gluconeogenesis	5.18E-04
30	GO:0009266: response to temperature stimulus	5.82E-04
31	GO:0009934: regulation of meristem structural organization	5.82E-04
32	GO:0048281: inflorescence morphogenesis	7.22E-04
33	GO:0006000: fructose metabolic process	7.22E-04
34	GO:0010623: programmed cell death involved in cell development	7.22E-04
35	GO:0080055: low-affinity nitrate transport	7.22E-04
36	GO:0035436: triose phosphate transmembrane transport	7.22E-04
37	GO:0045165: cell fate commitment	7.22E-04
38	GO:0009944: polarity specification of adaxial/abaxial axis	8.01E-04
39	GO:0010148: transpiration	1.03E-03
40	GO:0010306: rhamnogalacturonan II biosynthetic process	1.03E-03
41	GO:0010731: protein glutathionylation	1.03E-03
42	GO:1901332: negative regulation of lateral root development	1.03E-03
43	GO:0010017: red or far-red light signaling pathway	1.05E-03
44	GO:0010023: proanthocyanidin biosynthetic process	1.37E-03
45	GO:0051322: anaphase	1.37E-03
46	GO:0009765: photosynthesis, light harvesting	1.37E-03
47	GO:0006109: regulation of carbohydrate metabolic process	1.37E-03
48	GO:0015994: chlorophyll metabolic process	1.37E-03
49	GO:0010600: regulation of auxin biosynthetic process	1.37E-03
50	GO:0006552: leucine catabolic process	1.37E-03
51	GO:0010508: positive regulation of autophagy	1.37E-03
52	GO:0015713: phosphoglycerate transport	1.37E-03
53	GO:0010021: amylopectin biosynthetic process	1.37E-03
54	GO:0009735: response to cytokinin	1.40E-03
55	GO:0010158: abaxial cell fate specification	1.74E-03
56	GO:0006465: signal peptide processing	1.74E-03
57	GO:1902183: regulation of shoot apical meristem development	1.74E-03
58	GO:0045454: cell redox homeostasis	2.05E-03
59	GO:0000470: maturation of LSU-rRNA	2.14E-03
60	GO:0003006: developmental process involved in reproduction	2.14E-03
61	GO:0009643: photosynthetic acclimation	2.14E-03
62	GO:1901657: glycosyl compound metabolic process	2.18E-03
63	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.57E-03
64	GO:0048437: floral organ development	3.03E-03
65	GO:0070370: cellular heat acclimation	3.03E-03
66	GO:0009645: response to low light intensity stimulus	3.03E-03
67	GO:0022904: respiratory electron transport chain	3.03E-03
68	GO:0010103: stomatal complex morphogenesis	3.03E-03
69	GO:0010161: red light signaling pathway	3.03E-03
70	GO:0015995: chlorophyll biosynthetic process	3.24E-03
71	GO:0006810: transport	3.32E-03
72	GO:0010928: regulation of auxin mediated signaling pathway	3.51E-03
73	GO:0005978: glycogen biosynthetic process	3.51E-03
74	GO:0030091: protein repair	3.51E-03
75	GO:0006353: DNA-templated transcription, termination	3.51E-03
76	GO:0009704: de-etiolation	3.51E-03
77	GO:0005975: carbohydrate metabolic process	3.55E-03
78	GO:0006002: fructose 6-phosphate metabolic process	4.02E-03
79	GO:0001558: regulation of cell growth	4.02E-03
80	GO:0032544: plastid translation	4.02E-03
81	GO:0010093: specification of floral organ identity	4.02E-03
82	GO:0009631: cold acclimation	4.15E-03
83	GO:0051865: protein autoubiquitination	4.54E-03
84	GO:0048507: meristem development	4.54E-03
85	GO:2000024: regulation of leaf development	4.54E-03
86	GO:0006783: heme biosynthetic process	4.54E-03
87	GO:0042761: very long-chain fatty acid biosynthetic process	5.10E-03
88	GO:0005982: starch metabolic process	5.10E-03
89	GO:0006782: protoporphyrinogen IX biosynthetic process	5.67E-03
90	GO:0048829: root cap development	5.67E-03
91	GO:0010015: root morphogenesis	6.27E-03
92	GO:0043085: positive regulation of catalytic activity	6.27E-03
93	GO:0009750: response to fructose	6.27E-03
94	GO:0048229: gametophyte development	6.27E-03
95	GO:0009644: response to high light intensity	6.33E-03
96	GO:0010582: floral meristem determinacy	6.89E-03
97	GO:0071365: cellular response to auxin stimulus	6.89E-03
98	GO:0005986: sucrose biosynthetic process	7.52E-03
99	GO:0006006: glucose metabolic process	7.52E-03
100	GO:0009718: anthocyanin-containing compound biosynthetic process	7.52E-03
101	GO:0010075: regulation of meristem growth	7.52E-03
102	GO:0009767: photosynthetic electron transport chain	7.52E-03
103	GO:0080167: response to karrikin	7.86E-03
104	GO:0048467: gynoecium development	8.19E-03
105	GO:0009933: meristem structural organization	8.19E-03
106	GO:0043086: negative regulation of catalytic activity	9.33E-03
107	GO:0010025: wax biosynthetic process	9.57E-03
108	GO:0051302: regulation of cell division	1.10E-02
109	GO:0007017: microtubule-based process	1.10E-02
110	GO:0009768: photosynthesis, light harvesting in photosystem I	1.10E-02
111	GO:0019915: lipid storage	1.18E-02
112	GO:0061077: chaperone-mediated protein folding	1.18E-02
113	GO:0003333: amino acid transmembrane transport	1.18E-02
114	GO:0035428: hexose transmembrane transport	1.26E-02
115	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.26E-02
116	GO:0019748: secondary metabolic process	1.26E-02
117	GO:0009686: gibberellin biosynthetic process	1.34E-02
118	GO:0001944: vasculature development	1.34E-02
119	GO:0010089: xylem development	1.42E-02
120	GO:0048653: anther development	1.59E-02
121	GO:0010154: fruit development	1.67E-02
122	GO:0006662: glycerol ether metabolic process	1.67E-02
123	GO:0048868: pollen tube development	1.67E-02
124	GO:0046323: glucose import	1.67E-02
125	GO:0009646: response to absence of light	1.76E-02
126	GO:0019252: starch biosynthetic process	1.85E-02
127	GO:0009414: response to water deprivation	1.89E-02
128	GO:0045490: pectin catabolic process	1.95E-02
129	GO:0042742: defense response to bacterium	1.96E-02
130	GO:0055114: oxidation-reduction process	2.07E-02
131	GO:0071281: cellular response to iron ion	2.13E-02
132	GO:0030154: cell differentiation	2.22E-02
133	GO:0000910: cytokinesis	2.42E-02
134	GO:0016126: sterol biosynthetic process	2.53E-02
135	GO:0009607: response to biotic stimulus	2.63E-02
136	GO:0009627: systemic acquired resistance	2.73E-02
137	GO:0006950: response to stress	2.84E-02
138	GO:0016311: dephosphorylation	2.94E-02
139	GO:0009817: defense response to fungus, incompatible interaction	3.05E-02
140	GO:0018298: protein-chromophore linkage	3.05E-02
141	GO:0000160: phosphorelay signal transduction system	3.16E-02
142	GO:0006970: response to osmotic stress	3.25E-02
143	GO:0010218: response to far red light	3.27E-02
144	GO:0009723: response to ethylene	3.49E-02
145	GO:0006865: amino acid transport	3.50E-02
146	GO:0009637: response to blue light	3.61E-02
147	GO:0034599: cellular response to oxidative stress	3.73E-02
148	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.86E-02
149	GO:0006631: fatty acid metabolic process	4.08E-02
150	GO:0010114: response to red light	4.32E-02
151	GO:0009965: leaf morphogenesis	4.70E-02
152	GO:0006869: lipid transport	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
2	GO:0004567: beta-mannosidase activity	0.00E+00
3	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
4	GO:0004134: 4-alpha-glucanotransferase activity	0.00E+00
5	GO:0080082: esculin beta-glucosidase activity	0.00E+00
6	GO:0048039: ubiquinone binding	0.00E+00
7	GO:0009899: ent-kaurene synthase activity	0.00E+00
8	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
9	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
10	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
11	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
12	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.88E-05
13	GO:0048038: quinone binding	1.73E-04
14	GO:0005227: calcium activated cation channel activity	1.98E-04
15	GO:0080079: cellobiose glucosidase activity	1.98E-04
16	GO:0008184: glycogen phosphorylase activity	1.98E-04
17	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	1.98E-04
18	GO:0004853: uroporphyrinogen decarboxylase activity	1.98E-04
19	GO:0004645: phosphorylase activity	1.98E-04
20	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.43E-04
21	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	4.43E-04
22	GO:0018708: thiol S-methyltransferase activity	4.43E-04
23	GO:0003844: 1,4-alpha-glucan branching enzyme activity	4.43E-04
24	GO:0016868: intramolecular transferase activity, phosphotransferases	4.43E-04
25	GO:0010297: heteropolysaccharide binding	4.43E-04
26	GO:0004565: beta-galactosidase activity	5.18E-04
27	GO:0009055: electron carrier activity	6.79E-04
28	GO:0043169: cation binding	7.22E-04
29	GO:0045174: glutathione dehydrogenase (ascorbate) activity	7.22E-04
30	GO:0071917: triose-phosphate transmembrane transporter activity	7.22E-04
31	GO:0080054: low-affinity nitrate transmembrane transporter activity	7.22E-04
32	GO:0004857: enzyme inhibitor activity	8.01E-04
33	GO:0043621: protein self-association	8.42E-04
34	GO:0051537: 2 iron, 2 sulfur cluster binding	8.42E-04
35	GO:0033612: receptor serine/threonine kinase binding	9.64E-04
36	GO:0016851: magnesium chelatase activity	1.03E-03
37	GO:0043023: ribosomal large subunit binding	1.03E-03
38	GO:0030570: pectate lyase activity	1.14E-03
39	GO:0010328: auxin influx transmembrane transporter activity	1.37E-03
40	GO:0004506: squalene monooxygenase activity	1.37E-03
41	GO:0019199: transmembrane receptor protein kinase activity	1.37E-03
42	GO:0042277: peptide binding	1.37E-03
43	GO:0015120: phosphoglycerate transmembrane transporter activity	1.37E-03
44	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	1.74E-03
45	GO:0015035: protein disulfide oxidoreductase activity	1.78E-03
46	GO:0004332: fructose-bisphosphate aldolase activity	2.14E-03
47	GO:2001070: starch binding	2.14E-03
48	GO:0019843: rRNA binding	2.28E-03
49	GO:0051920: peroxiredoxin activity	2.57E-03
50	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.57E-03
51	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	2.57E-03
52	GO:0005261: cation channel activity	2.57E-03
53	GO:0102483: scopolin beta-glucosidase activity	3.24E-03
54	GO:0004033: aldo-keto reductase (NADP) activity	3.51E-03
55	GO:0005337: nucleoside transmembrane transporter activity	3.51E-03
56	GO:0016209: antioxidant activity	3.51E-03
57	GO:0008422: beta-glucosidase activity	4.96E-03
58	GO:0008047: enzyme activator activity	5.67E-03
59	GO:0004185: serine-type carboxypeptidase activity	5.85E-03
60	GO:0044183: protein binding involved in protein folding	6.27E-03
61	GO:0047372: acylglycerol lipase activity	6.27E-03
62	GO:0046872: metal ion binding	8.67E-03
63	GO:0031409: pigment binding	9.57E-03
64	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	9.63E-03
65	GO:0022891: substrate-specific transmembrane transporter activity	1.34E-02
66	GO:0047134: protein-disulfide reductase activity	1.50E-02
67	GO:0016829: lyase activity	1.53E-02
68	GO:0001085: RNA polymerase II transcription factor binding	1.67E-02
69	GO:0004791: thioredoxin-disulfide reductase activity	1.76E-02
70	GO:0005355: glucose transmembrane transporter activity	1.76E-02
71	GO:0000156: phosphorelay response regulator activity	2.13E-02
72	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.13E-02
73	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.33E-02
74	GO:0005200: structural constituent of cytoskeleton	2.33E-02
75	GO:0016597: amino acid binding	2.42E-02
76	GO:0016168: chlorophyll binding	2.63E-02
77	GO:0008168: methyltransferase activity	2.91E-02
78	GO:0016491: oxidoreductase activity	2.94E-02
79	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.38E-02
80	GO:0008233: peptidase activity	3.67E-02
81	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.75E-02
82	GO:0051539: 4 iron, 4 sulfur cluster binding	3.96E-02
83	GO:0004364: glutathione transferase activity	4.20E-02
84	GO:0015293: symporter activity	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
3	GO:0009534: chloroplast thylakoid	2.38E-13
4	GO:0009507: chloroplast	4.22E-13
5	GO:0009535: chloroplast thylakoid membrane	1.84E-12
6	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.74E-08
7	GO:0009570: chloroplast stroma	3.60E-07
8	GO:0009941: chloroplast envelope	1.73E-06
9	GO:0009579: thylakoid	1.68E-05
10	GO:0030095: chloroplast photosystem II	2.58E-05
11	GO:0009538: photosystem I reaction center	1.62E-04
12	GO:0009501: amyloplast	1.62E-04
13	GO:0005787: signal peptidase complex	1.98E-04
14	GO:0009344: nitrite reductase complex [NAD(P)H]	1.98E-04
15	GO:0010287: plastoglobule	3.25E-04
16	GO:0009543: chloroplast thylakoid lumen	3.54E-04
17	GO:0030093: chloroplast photosystem I	4.43E-04
18	GO:0010007: magnesium chelatase complex	7.22E-04
19	GO:0009654: photosystem II oxygen evolving complex	8.81E-04
20	GO:0019898: extrinsic component of membrane	1.79E-03
21	GO:0010319: stromule	2.46E-03
22	GO:0031305: integral component of mitochondrial inner membrane	3.51E-03
23	GO:0045298: tubulin complex	4.54E-03
24	GO:0031977: thylakoid lumen	5.39E-03
25	GO:0005740: mitochondrial envelope	5.67E-03
26	GO:0005874: microtubule	7.52E-03
27	GO:0009508: plastid chromosome	7.52E-03
28	GO:0009574: preprophase band	7.52E-03
29	GO:0009505: plant-type cell wall	8.35E-03
30	GO:0030076: light-harvesting complex	8.87E-03
31	GO:0042651: thylakoid membrane	1.10E-02
32	GO:0005773: vacuole	1.56E-02
33	GO:0009522: photosystem I	1.76E-02
34	GO:0009523: photosystem II	1.85E-02
35	GO:0048046: apoplast	1.93E-02
36	GO:0005840: ribosome	2.10E-02
37	GO:0009295: nucleoid	2.33E-02
38	GO:0009536: plastid	2.65E-02
39	GO:0005667: transcription factor complex	2.73E-02
40	GO:0000325: plant-type vacuole	3.38E-02
41	GO:0015934: large ribosomal subunit	3.38E-02