co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G11960

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000636: positive regulation of primary miRNA processing	0.00E+00
2	GO:0071629: ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteasome	0.00E+00
3	GO:0032953: regulation of (1->3)-beta-D-glucan biosynthetic process	0.00E+00
4	GO:0046398: UDP-glucuronate metabolic process	0.00E+00
5	GO:0052573: UDP-D-galactose metabolic process	0.00E+00
6	GO:2000630: positive regulation of miRNA metabolic process	0.00E+00
7	GO:0098755: maintenance of seed dormancy by absisic acid	0.00E+00
8	GO:0042353: fucose biosynthetic process	0.00E+00
9	GO:0032497: detection of lipopolysaccharide	0.00E+00
10	GO:0035024: negative regulation of Rho protein signal transduction	0.00E+00
11	GO:0006470: protein dephosphorylation	5.23E-05
12	GO:0009611: response to wounding	7.74E-05
13	GO:0009737: response to abscisic acid	1.01E-04
14	GO:0010200: response to chitin	1.98E-04
15	GO:0006955: immune response	2.45E-04
16	GO:0006680: glucosylceramide catabolic process	3.04E-04
17	GO:0090421: embryonic meristem initiation	3.04E-04
18	GO:0051180: vitamin transport	3.04E-04
19	GO:0030974: thiamine pyrophosphate transport	3.04E-04
20	GO:1902478: negative regulation of defense response to bacterium, incompatible interaction	3.04E-04
21	GO:0009865: pollen tube adhesion	3.04E-04
22	GO:0050691: regulation of defense response to virus by host	3.04E-04
23	GO:2000070: regulation of response to water deprivation	3.09E-04
24	GO:0009620: response to fungus	5.73E-04
25	GO:0009624: response to nematode	6.58E-04
26	GO:0010507: negative regulation of autophagy	6.66E-04
27	GO:0031407: oxylipin metabolic process	6.66E-04
28	GO:0010289: homogalacturonan biosynthetic process	6.66E-04
29	GO:0006898: receptor-mediated endocytosis	6.66E-04
30	GO:0015893: drug transport	6.66E-04
31	GO:0015786: UDP-glucose transport	6.66E-04
32	GO:0006468: protein phosphorylation	9.74E-04
33	GO:0090630: activation of GTPase activity	1.08E-03
34	GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid	1.08E-03
35	GO:0015783: GDP-fucose transport	1.08E-03
36	GO:0006011: UDP-glucose metabolic process	1.08E-03
37	GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	1.08E-03
38	GO:0080168: abscisic acid transport	1.08E-03
39	GO:0006598: polyamine catabolic process	1.08E-03
40	GO:0016045: detection of bacterium	1.08E-03
41	GO:0010359: regulation of anion channel activity	1.08E-03
42	GO:0070588: calcium ion transmembrane transport	1.18E-03
43	GO:0009863: salicylic acid mediated signaling pathway	1.45E-03
44	GO:0010371: regulation of gibberellin biosynthetic process	1.55E-03
45	GO:0072334: UDP-galactose transmembrane transport	1.55E-03
46	GO:0030100: regulation of endocytosis	1.55E-03
47	GO:0009399: nitrogen fixation	1.55E-03
48	GO:0033014: tetrapyrrole biosynthetic process	1.55E-03
49	GO:0009226: nucleotide-sugar biosynthetic process	1.55E-03
50	GO:0015696: ammonium transport	1.55E-03
51	GO:0048530: fruit morphogenesis	1.55E-03
52	GO:0009414: response to water deprivation	1.59E-03
53	GO:0009695: jasmonic acid biosynthetic process	1.60E-03
54	GO:0031408: oxylipin biosynthetic process	1.76E-03
55	GO:1902347: response to strigolactone	2.07E-03
56	GO:0072488: ammonium transmembrane transport	2.07E-03
57	GO:0033356: UDP-L-arabinose metabolic process	2.07E-03
58	GO:0010107: potassium ion import	2.07E-03
59	GO:0042991: transcription factor import into nucleus	2.07E-03
60	GO:0048497: maintenance of floral organ identity	2.65E-03
61	GO:0051225: spindle assembly	2.65E-03
62	GO:0006665: sphingolipid metabolic process	2.65E-03
63	GO:0009164: nucleoside catabolic process	2.65E-03
64	GO:0045487: gibberellin catabolic process	2.65E-03
65	GO:0009873: ethylene-activated signaling pathway	2.82E-03
66	GO:0048544: recognition of pollen	3.09E-03
67	GO:0006751: glutathione catabolic process	3.27E-03
68	GO:0010256: endomembrane system organization	3.27E-03
69	GO:0047484: regulation of response to osmotic stress	3.27E-03
70	GO:0006970: response to osmotic stress	3.27E-03
71	GO:0010337: regulation of salicylic acid metabolic process	3.27E-03
72	GO:1901001: negative regulation of response to salt stress	3.93E-03
73	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	3.93E-03
74	GO:0009639: response to red or far red light	4.30E-03
75	GO:0000398: mRNA splicing, via spliceosome	4.55E-03
76	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	4.64E-03
77	GO:0006401: RNA catabolic process	4.64E-03
78	GO:0010161: red light signaling pathway	4.64E-03
79	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	4.64E-03
80	GO:0009738: abscisic acid-activated signaling pathway	4.66E-03
81	GO:0006355: regulation of transcription, DNA-templated	5.22E-03
82	GO:0007155: cell adhesion	5.39E-03
83	GO:1900150: regulation of defense response to fungus	5.39E-03
84	GO:0035556: intracellular signal transduction	5.43E-03
85	GO:0006997: nucleus organization	6.18E-03
86	GO:0009880: embryonic pattern specification	6.18E-03
87	GO:0048193: Golgi vesicle transport	6.18E-03
88	GO:0006783: heme biosynthetic process	7.01E-03
89	GO:0001708: cell fate specification	7.01E-03
90	GO:0098656: anion transmembrane transport	7.01E-03
91	GO:0051865: protein autoubiquitination	7.01E-03
92	GO:0090305: nucleic acid phosphodiester bond hydrolysis	7.01E-03
93	GO:0009751: response to salicylic acid	7.19E-03
94	GO:0006811: ion transport	7.38E-03
95	GO:0006779: porphyrin-containing compound biosynthetic process	7.87E-03
96	GO:0010018: far-red light signaling pathway	7.87E-03
97	GO:0007346: regulation of mitotic cell cycle	7.87E-03
98	GO:0045087: innate immune response	8.49E-03
99	GO:0048829: root cap development	8.77E-03
100	GO:0006782: protoporphyrinogen IX biosynthetic process	8.77E-03
101	GO:0019538: protein metabolic process	8.77E-03
102	GO:0010468: regulation of gene expression	9.54E-03
103	GO:0030148: sphingolipid biosynthetic process	9.71E-03
104	GO:0010015: root morphogenesis	9.71E-03
105	GO:0052544: defense response by callose deposition in cell wall	9.71E-03
106	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.07E-02
107	GO:0000266: mitochondrial fission	1.07E-02
108	GO:0051707: response to other organism	1.10E-02
109	GO:0050826: response to freezing	1.17E-02
110	GO:0018107: peptidyl-threonine phosphorylation	1.17E-02
111	GO:0055046: microgametogenesis	1.17E-02
112	GO:0048467: gynoecium development	1.27E-02
113	GO:0002237: response to molecule of bacterial origin	1.27E-02
114	GO:0006855: drug transmembrane transport	1.28E-02
115	GO:0071732: cellular response to nitric oxide	1.38E-02
116	GO:0009969: xyloglucan biosynthetic process	1.38E-02
117	GO:0080188: RNA-directed DNA methylation	1.38E-02
118	GO:0009833: plant-type primary cell wall biogenesis	1.49E-02
119	GO:0042753: positive regulation of circadian rhythm	1.49E-02
120	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.82E-02
121	GO:0051321: meiotic cell cycle	1.84E-02
122	GO:0046777: protein autophosphorylation	1.90E-02
123	GO:0030245: cellulose catabolic process	1.96E-02
124	GO:0030433: ubiquitin-dependent ERAD pathway	1.96E-02
125	GO:0071369: cellular response to ethylene stimulus	2.09E-02
126	GO:0009686: gibberellin biosynthetic process	2.09E-02
127	GO:0045893: positive regulation of transcription, DNA-templated	2.15E-02
128	GO:0018105: peptidyl-serine phosphorylation	2.18E-02
129	GO:0010089: xylem development	2.22E-02
130	GO:0010584: pollen exine formation	2.22E-02
131	GO:0048443: stamen development	2.22E-02
132	GO:0019722: calcium-mediated signaling	2.22E-02
133	GO:0009742: brassinosteroid mediated signaling pathway	2.24E-02
134	GO:0009651: response to salt stress	2.25E-02
135	GO:0000271: polysaccharide biosynthetic process	2.48E-02
136	GO:0010118: stomatal movement	2.48E-02
137	GO:0048653: anther development	2.48E-02
138	GO:0006457: protein folding	2.56E-02
139	GO:0048868: pollen tube development	2.62E-02
140	GO:0045489: pectin biosynthetic process	2.62E-02
141	GO:0009958: positive gravitropism	2.62E-02
142	GO:0006814: sodium ion transport	2.76E-02
143	GO:0006351: transcription, DNA-templated	2.80E-02
144	GO:0006952: defense response	2.80E-02
145	GO:0009408: response to heat	2.85E-02
146	GO:0009845: seed germination	2.86E-02
147	GO:0009749: response to glucose	2.90E-02
148	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.04E-02
149	GO:0010193: response to ozone	3.04E-02
150	GO:0009790: embryo development	3.09E-02
151	GO:1901657: glycosyl compound metabolic process	3.33E-02
152	GO:0071281: cellular response to iron ion	3.33E-02
153	GO:0019760: glucosinolate metabolic process	3.49E-02
154	GO:0010286: heat acclimation	3.64E-02
155	GO:0051607: defense response to virus	3.79E-02
156	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	4.11E-02
157	GO:0010029: regulation of seed germination	4.11E-02
158	GO:0007166: cell surface receptor signaling pathway	4.17E-02
159	GO:0009617: response to bacterium	4.35E-02
160	GO:0006950: response to stress	4.44E-02
161	GO:0015995: chlorophyll biosynthetic process	4.44E-02
162	GO:0016049: cell growth	4.60E-02
163	GO:0008219: cell death	4.77E-02
164	GO:0048481: plant ovule development	4.77E-02
165	GO:0010311: lateral root formation	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0047350: glucuronate-1-phosphate uridylyltransferase activity	0.00E+00
2	GO:0010857: calcium-dependent protein kinase activity	0.00E+00
3	GO:0010491: UTP:arabinose-1-phosphate uridylyltransferase activity	0.00E+00
4	GO:0017048: Rho GTPase binding	0.00E+00
5	GO:0051748: UTP-monosaccharide-1-phosphate uridylyltransferase activity	0.00E+00
6	GO:0008419: RNA lariat debranching enzyme activity	0.00E+00
7	GO:0017103: UTP:galactose-1-phosphate uridylyltransferase activity	0.00E+00
8	GO:0047338: UTP:xylose-1-phosphate uridylyltransferase activity	0.00E+00
9	GO:0016629: 12-oxophytodienoate reductase activity	4.22E-06
10	GO:0004722: protein serine/threonine phosphatase activity	5.82E-05
11	GO:0043565: sequence-specific DNA binding	2.33E-04
12	GO:0016301: kinase activity	2.40E-04
13	GO:0015297: antiporter activity	2.56E-04
14	GO:0052894: norspermine:oxygen oxidoreductase activity	3.04E-04
15	GO:0090422: thiamine pyrophosphate transporter activity	3.04E-04
16	GO:0015398: high-affinity secondary active ammonium transmembrane transporter activity	3.04E-04
17	GO:0052895: N1-acetylspermine:oxygen oxidoreductase (N1-acetylspermidine-forming) activity	3.04E-04
18	GO:0090440: abscisic acid transporter activity	3.04E-04
19	GO:0004348: glucosylceramidase activity	3.04E-04
20	GO:0004103: choline kinase activity	6.66E-04
21	GO:0008883: glutamyl-tRNA reductase activity	6.66E-04
22	GO:0017040: ceramidase activity	6.66E-04
23	GO:0052901: spermine:oxygen oxidoreductase (spermidine-forming) activity	6.66E-04
24	GO:0045140: inositol phosphoceramide synthase activity	6.66E-04
25	GO:0046423: allene-oxide cyclase activity	1.08E-03
26	GO:0004383: guanylate cyclase activity	1.08E-03
27	GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity	1.08E-03
28	GO:0005457: GDP-fucose transmembrane transporter activity	1.08E-03
29	GO:0046592: polyamine oxidase activity	1.08E-03
30	GO:0003840: gamma-glutamyltransferase activity	1.08E-03
31	GO:0036374: glutathione hydrolase activity	1.08E-03
32	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	1.55E-03
33	GO:0001653: peptide receptor activity	1.55E-03
34	GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity	1.55E-03
35	GO:0005432: calcium:sodium antiporter activity	1.55E-03
36	GO:0004715: non-membrane spanning protein tyrosine kinase activity	1.55E-03
37	GO:0005460: UDP-glucose transmembrane transporter activity	1.55E-03
38	GO:0044212: transcription regulatory region DNA binding	1.67E-03
39	GO:0004659: prenyltransferase activity	2.07E-03
40	GO:0043015: gamma-tubulin binding	2.07E-03
41	GO:0047631: ADP-ribose diphosphatase activity	2.65E-03
42	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	2.65E-03
43	GO:0004356: glutamate-ammonia ligase activity	2.65E-03
44	GO:0009922: fatty acid elongase activity	2.65E-03
45	GO:0051011: microtubule minus-end binding	2.65E-03
46	GO:0005459: UDP-galactose transmembrane transporter activity	2.65E-03
47	GO:0018685: alkane 1-monooxygenase activity	2.65E-03
48	GO:0005516: calmodulin binding	3.01E-03
49	GO:0010181: FMN binding	3.09E-03
50	GO:0008519: ammonium transmembrane transporter activity	3.27E-03
51	GO:0000210: NAD+ diphosphatase activity	3.27E-03
52	GO:0004674: protein serine/threonine kinase activity	3.70E-03
53	GO:0019900: kinase binding	3.93E-03
54	GO:0051020: GTPase binding	3.93E-03
55	GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	3.93E-03
56	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	4.56E-03
57	GO:0004143: diacylglycerol kinase activity	4.64E-03
58	GO:0008143: poly(A) binding	4.64E-03
59	GO:0015491: cation:cation antiporter activity	5.39E-03
60	GO:0004721: phosphoprotein phosphatase activity	6.04E-03
61	GO:0003951: NAD+ kinase activity	6.18E-03
62	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	6.96E-03
63	GO:0005096: GTPase activator activity	7.03E-03
64	GO:0015238: drug transmembrane transporter activity	7.03E-03
65	GO:0004864: protein phosphatase inhibitor activity	8.77E-03
66	GO:0004713: protein tyrosine kinase activity	8.77E-03
67	GO:0004672: protein kinase activity	1.14E-02
68	GO:0005315: inorganic phosphate transmembrane transporter activity	1.17E-02
69	GO:0005262: calcium channel activity	1.17E-02
70	GO:0019888: protein phosphatase regulator activity	1.17E-02
71	GO:0005388: calcium-transporting ATPase activity	1.17E-02
72	GO:0000175: 3'-5'-exoribonuclease activity	1.17E-02
73	GO:0043621: protein self-association	1.19E-02
74	GO:0008131: primary amine oxidase activity	1.27E-02
75	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.46E-02
76	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.49E-02
77	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.49E-02
78	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.49E-02
79	GO:0003677: DNA binding	1.51E-02
80	GO:0031625: ubiquitin protein ligase binding	1.64E-02
81	GO:0051087: chaperone binding	1.72E-02
82	GO:0004540: ribonuclease activity	1.84E-02
83	GO:0004707: MAP kinase activity	1.84E-02
84	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.96E-02
85	GO:0046872: metal ion binding	2.02E-02
86	GO:0008514: organic anion transmembrane transporter activity	2.22E-02
87	GO:0005524: ATP binding	2.53E-02
88	GO:0030246: carbohydrate binding	2.71E-02
89	GO:0019901: protein kinase binding	2.90E-02
90	GO:0004518: nuclease activity	3.19E-02
91	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.64E-02
92	GO:0008017: microtubule binding	3.82E-02
93	GO:0009931: calcium-dependent protein serine/threonine kinase activity	4.27E-02
94	GO:0005509: calcium ion binding	4.37E-02
95	GO:0004683: calmodulin-dependent protein kinase activity	4.44E-02
96	GO:0102483: scopolin beta-glucosidase activity	4.44E-02
97	GO:0004806: triglyceride lipase activity	4.44E-02
98	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0070382: exocytic vesicle	3.04E-04
2	GO:0070652: HAUS complex	1.08E-03
3	GO:0045177: apical part of cell	1.55E-03
4	GO:0090406: pollen tube	1.66E-03
5	GO:0000178: exosome (RNase complex)	2.65E-03
6	GO:0005886: plasma membrane	3.53E-03
7	GO:0030173: integral component of Golgi membrane	3.93E-03
8	GO:0010494: cytoplasmic stress granule	7.01E-03
9	GO:0015030: Cajal body	7.87E-03
10	GO:0016604: nuclear body	7.87E-03
11	GO:0005876: spindle microtubule	7.87E-03
12	GO:0000159: protein phosphatase type 2A complex	9.71E-03
13	GO:0031902: late endosome membrane	1.01E-02
14	GO:0005634: nucleus	1.07E-02
15	GO:0046658: anchored component of plasma membrane	1.09E-02
16	GO:0009506: plasmodesma	1.17E-02
17	GO:0005938: cell cortex	1.17E-02
18	GO:0005768: endosome	1.40E-02
19	GO:0005635: nuclear envelope	1.59E-02
20	GO:0005681: spliceosomal complex	1.75E-02
21	GO:0010008: endosome membrane	1.81E-02
22	GO:0030136: clathrin-coated vesicle	2.35E-02
23	GO:0016021: integral component of membrane	2.54E-02
24	GO:0005770: late endosome	2.62E-02
25	GO:0032580: Golgi cisterna membrane	3.49E-02
26	GO:0005778: peroxisomal membrane	3.64E-02
27	GO:0000932: P-body	3.95E-02