co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G11475

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090239: regulation of histone H4 acetylation	0.00E+00
2	GO:0000740: nuclear membrane fusion	0.00E+00
3	GO:0044843: cell cycle G1/S phase transition	0.00E+00
4	GO:0032211: negative regulation of telomere maintenance via telomerase	0.00E+00
5	GO:1904874: positive regulation of telomerase RNA localization to Cajal body	0.00E+00
6	GO:0007530: sex determination	0.00E+00
7	GO:0070918: production of small RNA involved in gene silencing by RNA	0.00E+00
8	GO:0006412: translation	1.69E-155
9	GO:0042254: ribosome biogenesis	5.64E-61
10	GO:0000027: ribosomal large subunit assembly	1.31E-11
11	GO:0006626: protein targeting to mitochondrion	3.94E-07
12	GO:0000028: ribosomal small subunit assembly	9.62E-07
13	GO:0000398: mRNA splicing, via spliceosome	2.63E-06
14	GO:0000387: spliceosomal snRNP assembly	3.80E-06
15	GO:0009955: adaxial/abaxial pattern specification	2.03E-05
16	GO:0002181: cytoplasmic translation	5.42E-05
17	GO:1902626: assembly of large subunit precursor of preribosome	5.42E-05
18	GO:0009735: response to cytokinin	2.98E-04
19	GO:0006414: translational elongation	3.70E-04
20	GO:0030150: protein import into mitochondrial matrix	4.78E-04
21	GO:0006458: 'de novo' protein folding	5.47E-04
22	GO:0031118: rRNA pseudouridine synthesis	6.16E-04
23	GO:0015801: aromatic amino acid transport	6.16E-04
24	GO:0048453: sepal formation	6.16E-04
25	GO:0017198: N-terminal peptidyl-serine acetylation	6.16E-04
26	GO:0031060: regulation of histone methylation	6.16E-04
27	GO:0030490: maturation of SSU-rRNA	6.16E-04
28	GO:2001006: regulation of cellulose biosynthetic process	6.16E-04
29	GO:0000494: box C/D snoRNA 3'-end processing	6.16E-04
30	GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	6.16E-04
31	GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	6.16E-04
32	GO:0018002: N-terminal peptidyl-glutamic acid acetylation	6.16E-04
33	GO:0006407: rRNA export from nucleus	6.16E-04
34	GO:1990258: histone glutamine methylation	6.16E-04
35	GO:0031120: snRNA pseudouridine synthesis	6.16E-04
36	GO:0006475: internal protein amino acid acetylation	6.16E-04
37	GO:0000413: protein peptidyl-prolyl isomerization	1.05E-03
38	GO:0010197: polar nucleus fusion	1.15E-03
39	GO:0046686: response to cadmium ion	1.19E-03
40	GO:0008283: cell proliferation	1.21E-03
41	GO:0045905: positive regulation of translational termination	1.32E-03
42	GO:0071668: plant-type cell wall assembly	1.32E-03
43	GO:0045901: positive regulation of translational elongation	1.32E-03
44	GO:0045041: protein import into mitochondrial intermembrane space	1.32E-03
45	GO:0048569: post-embryonic animal organ development	1.32E-03
46	GO:0043981: histone H4-K5 acetylation	1.32E-03
47	GO:0006452: translational frameshifting	1.32E-03
48	GO:0010198: synergid death	1.32E-03
49	GO:0009967: positive regulation of signal transduction	1.32E-03
50	GO:0080156: mitochondrial mRNA modification	1.51E-03
51	GO:0045793: positive regulation of cell size	2.18E-03
52	GO:0034227: tRNA thio-modification	2.18E-03
53	GO:0010476: gibberellin mediated signaling pathway	2.18E-03
54	GO:0042256: mature ribosome assembly	2.18E-03
55	GO:0010338: leaf formation	2.18E-03
56	GO:0009150: purine ribonucleotide metabolic process	2.18E-03
57	GO:0009651: response to salt stress	2.20E-03
58	GO:0006820: anion transport	2.32E-03
59	GO:0009558: embryo sac cellularization	3.17E-03
60	GO:0032877: positive regulation of DNA endoreduplication	3.17E-03
61	GO:0007004: telomere maintenance via telomerase	3.17E-03
62	GO:0006166: purine ribonucleoside salvage	3.17E-03
63	GO:0070301: cellular response to hydrogen peroxide	3.17E-03
64	GO:0051085: chaperone mediated protein folding requiring cofactor	3.17E-03
65	GO:0006241: CTP biosynthetic process	3.17E-03
66	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	3.17E-03
67	GO:0006165: nucleoside diphosphate phosphorylation	3.17E-03
68	GO:0006228: UTP biosynthetic process	3.17E-03
69	GO:0006164: purine nucleotide biosynthetic process	3.17E-03
70	GO:0006168: adenine salvage	3.17E-03
71	GO:0009793: embryo development ending in seed dormancy	3.79E-03
72	GO:0051781: positive regulation of cell division	4.28E-03
73	GO:0042274: ribosomal small subunit biogenesis	4.28E-03
74	GO:0006183: GTP biosynthetic process	4.28E-03
75	GO:0006621: protein retention in ER lumen	4.28E-03
76	GO:0061077: chaperone-mediated protein folding	5.04E-03
77	GO:0044209: AMP salvage	5.49E-03
78	GO:0031167: rRNA methylation	5.49E-03
79	GO:0019408: dolichol biosynthetic process	5.49E-03
80	GO:0016070: RNA metabolic process	6.81E-03
81	GO:0000470: maturation of LSU-rRNA	6.81E-03
82	GO:0043248: proteasome assembly	6.81E-03
83	GO:0010358: leaf shaping	6.81E-03
84	GO:0045040: protein import into mitochondrial outer membrane	6.81E-03
85	GO:0000741: karyogamy	6.81E-03
86	GO:0006413: translational initiation	6.84E-03
87	GO:0000245: spliceosomal complex assembly	8.24E-03
88	GO:0009554: megasporogenesis	8.24E-03
89	GO:0016444: somatic cell DNA recombination	8.24E-03
90	GO:1901001: negative regulation of response to salt stress	8.24E-03
91	GO:0042026: protein refolding	8.24E-03
92	GO:0009612: response to mechanical stimulus	8.24E-03
93	GO:0006364: rRNA processing	9.38E-03
94	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	9.76E-03
95	GO:0009645: response to low light intensity stimulus	9.76E-03
96	GO:0051603: proteolysis involved in cellular protein catabolic process	9.81E-03
97	GO:0050821: protein stabilization	1.14E-02
98	GO:0001522: pseudouridine synthesis	1.14E-02
99	GO:0009690: cytokinin metabolic process	1.14E-02
100	GO:0044030: regulation of DNA methylation	1.31E-02
101	GO:0030968: endoplasmic reticulum unfolded protein response	1.31E-02
102	GO:0009808: lignin metabolic process	1.31E-02
103	GO:0001558: regulation of cell growth	1.31E-02
104	GO:0001510: RNA methylation	1.31E-02
105	GO:0010204: defense response signaling pathway, resistance gene-independent	1.31E-02
106	GO:0009553: embryo sac development	1.42E-02
107	GO:0006189: 'de novo' IMP biosynthetic process	1.49E-02
108	GO:0048589: developmental growth	1.49E-02
109	GO:0098656: anion transmembrane transport	1.49E-02
110	GO:0007338: single fertilization	1.49E-02
111	GO:0009245: lipid A biosynthetic process	1.49E-02
112	GO:0030042: actin filament depolymerization	1.67E-02
113	GO:0010449: root meristem growth	1.67E-02
114	GO:0048229: gametophyte development	2.07E-02
115	GO:0010015: root morphogenesis	2.07E-02
116	GO:0006913: nucleocytoplasmic transport	2.07E-02
117	GO:0015770: sucrose transport	2.07E-02
118	GO:0016925: protein sumoylation	2.28E-02
119	GO:0006790: sulfur compound metabolic process	2.28E-02
120	GO:0000724: double-strand break repair via homologous recombination	2.38E-02
121	GO:2000028: regulation of photoperiodism, flowering	2.50E-02
122	GO:0010102: lateral root morphogenesis	2.50E-02
123	GO:0010628: positive regulation of gene expression	2.50E-02
124	GO:0048467: gynoecium development	2.73E-02
125	GO:0048440: carpel development	2.73E-02
126	GO:0009933: meristem structural organization	2.73E-02
127	GO:0006446: regulation of translational initiation	2.73E-02
128	GO:0015031: protein transport	2.78E-02
129	GO:0009926: auxin polar transport	3.21E-02
130	GO:0006289: nucleotide-excision repair	3.44E-02
131	GO:0006487: protein N-linked glycosylation	3.44E-02
132	GO:0009116: nucleoside metabolic process	3.44E-02
133	GO:0006406: mRNA export from nucleus	3.44E-02
134	GO:0009644: response to high light intensity	3.47E-02
135	GO:0009965: leaf morphogenesis	3.60E-02
136	GO:0008380: RNA splicing	3.66E-02
137	GO:0051302: regulation of cell division	3.69E-02
138	GO:0051260: protein homooligomerization	3.95E-02
139	GO:0010431: seed maturation	3.95E-02
140	GO:0006334: nucleosome assembly	3.95E-02
141	GO:0006306: DNA methylation	3.95E-02
142	GO:0003333: amino acid transmembrane transport	3.95E-02
143	GO:0007005: mitochondrion organization	4.21E-02
144	GO:0040007: growth	4.48E-02
145	GO:0071215: cellular response to abscisic acid stimulus	4.48E-02
146	GO:0010082: regulation of root meristem growth	4.48E-02
147	GO:0006457: protein folding	4.74E-02
148	GO:0010089: xylem development	4.75E-02
149	GO:0048443: stamen development	4.75E-02
150	GO:0019722: calcium-mediated signaling	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor	0.00E+00
2	GO:0034513: box H/ACA snoRNA binding	0.00E+00
3	GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity	0.00E+00
4	GO:0005212: structural constituent of eye lens	0.00E+00
5	GO:0003735: structural constituent of ribosome	4.81E-197
6	GO:0003729: mRNA binding	1.03E-38
7	GO:0019843: rRNA binding	1.16E-17
8	GO:0003723: RNA binding	1.99E-07
9	GO:0003746: translation elongation factor activity	1.19E-05
10	GO:0008097: 5S rRNA binding	1.14E-04
11	GO:0044183: protein binding involved in protein folding	1.77E-04
12	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	5.72E-04
13	GO:0004298: threonine-type endopeptidase activity	6.15E-04
14	GO:1990259: histone-glutamine methyltransferase activity	6.16E-04
15	GO:0035614: snRNA stem-loop binding	6.16E-04
16	GO:1990189: peptide-serine-N-acetyltransferase activity	6.16E-04
17	GO:1990190: peptide-glutamate-N-acetyltransferase activity	6.16E-04
18	GO:0005080: protein kinase C binding	6.16E-04
19	GO:0030515: snoRNA binding	7.00E-04
20	GO:0015288: porin activity	8.71E-04
21	GO:0043022: ribosome binding	8.71E-04
22	GO:0008308: voltage-gated anion channel activity	1.06E-03
23	GO:0030619: U1 snRNA binding	1.32E-03
24	GO:0015173: aromatic amino acid transmembrane transporter activity	1.32E-03
25	GO:0070034: telomerase RNA binding	1.32E-03
26	GO:0005078: MAP-kinase scaffold activity	1.32E-03
27	GO:0001055: RNA polymerase II activity	1.50E-03
28	GO:0001054: RNA polymerase I activity	2.02E-03
29	GO:0070180: large ribosomal subunit rRNA binding	2.18E-03
30	GO:0015462: ATPase-coupled protein transmembrane transporter activity	2.18E-03
31	GO:0008430: selenium binding	2.18E-03
32	GO:0032947: protein complex scaffold	2.18E-03
33	GO:0008649: rRNA methyltransferase activity	2.18E-03
34	GO:0001056: RNA polymerase III activity	2.32E-03
35	GO:0015266: protein channel activity	2.64E-03
36	GO:0004550: nucleoside diphosphate kinase activity	3.17E-03
37	GO:0047627: adenylylsulfatase activity	3.17E-03
38	GO:0003999: adenine phosphoribosyltransferase activity	3.17E-03
39	GO:0051082: unfolded protein binding	3.30E-03
40	GO:0010011: auxin binding	4.28E-03
41	GO:0046923: ER retention sequence binding	4.28E-03
42	GO:0070628: proteasome binding	4.28E-03
43	GO:0016004: phospholipase activator activity	4.28E-03
44	GO:0031386: protein tag	5.49E-03
45	GO:0045547: dehydrodolichyl diphosphate synthase activity	5.49E-03
46	GO:0005275: amine transmembrane transporter activity	5.49E-03
47	GO:0031593: polyubiquitin binding	6.81E-03
48	GO:0031177: phosphopantetheine binding	6.81E-03
49	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	6.81E-03
50	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	7.80E-03
51	GO:0051920: peroxiredoxin activity	8.24E-03
52	GO:0000035: acyl binding	8.24E-03
53	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	9.38E-03
54	GO:0004872: receptor activity	9.61E-03
55	GO:0008235: metalloexopeptidase activity	9.76E-03
56	GO:0042162: telomeric DNA binding	9.76E-03
57	GO:0008121: ubiquinol-cytochrome-c reductase activity	9.76E-03
58	GO:0016209: antioxidant activity	1.14E-02
59	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	1.14E-02
60	GO:0008233: peptidase activity	1.99E-02
61	GO:0008515: sucrose transmembrane transporter activity	2.07E-02
62	GO:0008794: arsenate reductase (glutaredoxin) activity	2.07E-02
63	GO:0003697: single-stranded DNA binding	2.49E-02
64	GO:0031072: heat shock protein binding	2.50E-02
65	GO:0042393: histone binding	2.83E-02
66	GO:0051119: sugar transmembrane transporter activity	2.96E-02
67	GO:0051536: iron-sulfur cluster binding	3.44E-02
68	GO:0043130: ubiquitin binding	3.44E-02
69	GO:0043621: protein self-association	3.47E-02
70	GO:0003743: translation initiation factor activity	3.57E-02
71	GO:0051087: chaperone binding	3.69E-02

Rank	GO Term	Adjusted P value
1	GO:0043186: P granule	0.00E+00
2	GO:0090661: box H/ACA telomerase RNP complex	0.00E+00
3	GO:0072589: box H/ACA scaRNP complex	0.00E+00
4	GO:0005832: chaperonin-containing T-complex	0.00E+00
5	GO:0005840: ribosome	6.28E-137
6	GO:0022626: cytosolic ribosome	1.52E-118
7	GO:0022625: cytosolic large ribosomal subunit	2.33E-114
8	GO:0022627: cytosolic small ribosomal subunit	5.40E-77
9	GO:0005829: cytosol	2.06E-39
10	GO:0005737: cytoplasm	1.66E-37
11	GO:0005730: nucleolus	1.80E-37
12	GO:0009506: plasmodesma	3.69E-23
13	GO:0015934: large ribosomal subunit	1.28E-22
14	GO:0005774: vacuolar membrane	8.06E-17
15	GO:0015935: small ribosomal subunit	3.37E-11
16	GO:0016020: membrane	2.56E-10
17	GO:0005732: small nucleolar ribonucleoprotein complex	6.25E-10
18	GO:0005773: vacuole	9.74E-10
19	GO:0009507: chloroplast	1.89E-07
20	GO:0005618: cell wall	3.12E-06
21	GO:0005681: spliceosomal complex	9.22E-06
22	GO:0019013: viral nucleocapsid	1.41E-05
23	GO:0034719: SMN-Sm protein complex	5.42E-05
24	GO:0005853: eukaryotic translation elongation factor 1 complex	5.42E-05
25	GO:0005742: mitochondrial outer membrane translocase complex	6.43E-05
26	GO:0005685: U1 snRNP	8.64E-05
27	GO:0071011: precatalytic spliceosome	1.12E-04
28	GO:0015030: Cajal body	1.12E-04
29	GO:0071013: catalytic step 2 spliceosome	1.77E-04
30	GO:0005682: U5 snRNP	1.95E-04
31	GO:0005665: DNA-directed RNA polymerase II, core complex	2.17E-04
32	GO:0005687: U4 snRNP	2.95E-04
33	GO:0097526: spliceosomal tri-snRNP complex	2.95E-04
34	GO:0000502: proteasome complex	3.74E-04
35	GO:0000419: DNA-directed RNA polymerase V complex	4.17E-04
36	GO:0005689: U12-type spliceosomal complex	5.47E-04
37	GO:0005839: proteasome core complex	6.15E-04
38	GO:0030686: 90S preribosome	6.16E-04
39	GO:0005688: U6 snRNP	8.71E-04
40	GO:0046930: pore complex	1.06E-03
41	GO:0046540: U4/U6 x U5 tri-snRNP complex	1.06E-03
42	GO:0005886: plasma membrane	1.23E-03
43	GO:0005736: DNA-directed RNA polymerase I complex	1.26E-03
44	GO:0071010: prespliceosome	1.32E-03
45	GO:0035145: exon-exon junction complex	1.32E-03
46	GO:0031415: NatA complex	1.32E-03
47	GO:0005697: telomerase holoenzyme complex	1.32E-03
48	GO:0005666: DNA-directed RNA polymerase III complex	1.50E-03
49	GO:0000418: DNA-directed RNA polymerase IV complex	1.75E-03
50	GO:0005686: U2 snRNP	1.75E-03
51	GO:0034715: pICln-Sm protein complex	2.18E-03
52	GO:0031429: box H/ACA snoRNP complex	3.17E-03
53	GO:1990726: Lsm1-7-Pat1 complex	3.17E-03
54	GO:0005758: mitochondrial intermembrane space	4.15E-03
55	GO:0005622: intracellular	4.81E-03
56	GO:0005741: mitochondrial outer membrane	5.04E-03
57	GO:0000243: commitment complex	6.81E-03
58	GO:0031428: box C/D snoRNP complex	6.81E-03
59	GO:0016272: prefoldin complex	8.24E-03
60	GO:0005762: mitochondrial large ribosomal subunit	8.24E-03
61	GO:0071004: U2-type prespliceosome	1.14E-02
62	GO:0005747: mitochondrial respiratory chain complex I	1.21E-02
63	GO:0030529: intracellular ribonucleoprotein complex	1.50E-02
64	GO:0016604: nuclear body	1.67E-02
65	GO:0005654: nucleoplasm	1.90E-02
66	GO:0005852: eukaryotic translation initiation factor 3 complex	2.07E-02
67	GO:0008541: proteasome regulatory particle, lid subcomplex	2.07E-02
68	GO:0048471: perinuclear region of cytoplasm	2.07E-02
69	GO:0032040: small-subunit processome	2.28E-02
70	GO:0031307: integral component of mitochondrial outer membrane	2.28E-02
71	GO:0009508: plastid chromosome	2.50E-02
72	GO:0009536: plastid	2.58E-02
73	GO:0005759: mitochondrial matrix	2.62E-02
74	GO:0005750: mitochondrial respiratory chain complex III	2.73E-02
75	GO:0005769: early endosome	3.20E-02
76	GO:0005739: mitochondrion	3.23E-02
77	GO:0005743: mitochondrial inner membrane	3.26E-02
78	GO:0070469: respiratory chain	3.69E-02
79	GO:0015629: actin cytoskeleton	4.48E-02
80	GO:0005744: mitochondrial inner membrane presequence translocase complex	4.75E-02