Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G11440

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0018293: protein-FAD linkage0.00E+00
2GO:0034553: mitochondrial respiratory chain complex II assembly0.00E+00
3GO:0015822: ornithine transport0.00E+00
4GO:0010202: response to low fluence red light stimulus0.00E+00
5GO:0017012: protein-phytochromobilin linkage0.00E+00
6GO:0046460: neutral lipid biosynthetic process0.00E+00
7GO:0035674: tricarboxylic acid transmembrane transport0.00E+00
8GO:0036172: thiamine salvage0.00E+00
9GO:0009649: entrainment of circadian clock3.00E-05
10GO:0009903: chloroplast avoidance movement9.88E-05
11GO:0006520: cellular amino acid metabolic process1.34E-04
12GO:0009787: regulation of abscisic acid-activated signaling pathway1.67E-04
13GO:1990542: mitochondrial transmembrane transport2.02E-04
14GO:0000066: mitochondrial ornithine transport2.02E-04
15GO:0080065: 4-alpha-methyl-delta7-sterol oxidation2.02E-04
16GO:0006835: dicarboxylic acid transport2.02E-04
17GO:0006567: threonine catabolic process2.02E-04
18GO:1902265: abscisic acid homeostasis2.02E-04
19GO:0006526: arginine biosynthetic process2.08E-04
20GO:0019441: tryptophan catabolic process to kynurenine4.52E-04
21GO:0009257: 10-formyltetrahydrofolate biosynthetic process4.52E-04
22GO:0043100: pyrimidine nucleobase salvage4.52E-04
23GO:0010343: singlet oxygen-mediated programmed cell death4.52E-04
24GO:0044419: interspecies interaction between organisms4.52E-04
25GO:0010617: circadian regulation of calcium ion oscillation4.52E-04
26GO:2000071: regulation of defense response by callose deposition4.52E-04
27GO:1902000: homogentisate catabolic process4.52E-04
28GO:0007154: cell communication4.52E-04
29GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation4.52E-04
30GO:0006839: mitochondrial transport6.80E-04
31GO:0071492: cellular response to UV-A7.36E-04
32GO:0044375: regulation of peroxisome size7.36E-04
33GO:0010476: gibberellin mediated signaling pathway7.36E-04
34GO:0010325: raffinose family oligosaccharide biosynthetic process7.36E-04
35GO:0009072: aromatic amino acid family metabolic process7.36E-04
36GO:0031022: nuclear migration along microfilament7.36E-04
37GO:0006591: ornithine metabolic process7.36E-04
38GO:0001887: selenium compound metabolic process7.36E-04
39GO:0006882: cellular zinc ion homeostasis1.05E-03
40GO:0006572: tyrosine catabolic process1.05E-03
41GO:0009584: detection of visible light1.05E-03
42GO:0006241: CTP biosynthetic process1.05E-03
43GO:0009399: nitrogen fixation1.05E-03
44GO:0009647: skotomorphogenesis1.05E-03
45GO:0006165: nucleoside diphosphate phosphorylation1.05E-03
46GO:0009113: purine nucleobase biosynthetic process1.05E-03
47GO:0006228: UTP biosynthetic process1.05E-03
48GO:0010148: transpiration1.05E-03
49GO:0009963: positive regulation of flavonoid biosynthetic process1.05E-03
50GO:0034613: cellular protein localization1.40E-03
51GO:0006542: glutamine biosynthetic process1.40E-03
52GO:0009687: abscisic acid metabolic process1.40E-03
53GO:0070534: protein K63-linked ubiquitination1.40E-03
54GO:0006545: glycine biosynthetic process1.40E-03
55GO:0071486: cellular response to high light intensity1.40E-03
56GO:0009939: positive regulation of gibberellic acid mediated signaling pathway1.40E-03
57GO:0009765: photosynthesis, light harvesting1.40E-03
58GO:0006183: GTP biosynthetic process1.40E-03
59GO:0006221: pyrimidine nucleotide biosynthetic process1.40E-03
60GO:0008295: spermidine biosynthetic process1.40E-03
61GO:0044205: 'de novo' UMP biosynthetic process1.40E-03
62GO:0009902: chloroplast relocation1.40E-03
63GO:0080022: primary root development1.49E-03
64GO:0009229: thiamine diphosphate biosynthetic process1.78E-03
65GO:0000304: response to singlet oxygen1.78E-03
66GO:0006544: glycine metabolic process1.78E-03
67GO:0046283: anthocyanin-containing compound metabolic process1.78E-03
68GO:0009904: chloroplast accumulation movement1.78E-03
69GO:0006563: L-serine metabolic process2.19E-03
70GO:0006121: mitochondrial electron transport, succinate to ubiquinone2.19E-03
71GO:0006301: postreplication repair2.19E-03
72GO:0010304: PSII associated light-harvesting complex II catabolic process2.19E-03
73GO:0070814: hydrogen sulfide biosynthetic process2.19E-03
74GO:0009228: thiamine biosynthetic process2.19E-03
75GO:0009117: nucleotide metabolic process2.19E-03
76GO:0048444: floral organ morphogenesis2.63E-03
77GO:0010244: response to low fluence blue light stimulus by blue low-fluence system2.63E-03
78GO:0034389: lipid particle organization2.63E-03
79GO:0016126: sterol biosynthetic process2.85E-03
80GO:0010029: regulation of seed germination3.01E-03
81GO:0010374: stomatal complex development3.09E-03
82GO:0010161: red light signaling pathway3.09E-03
83GO:0009396: folic acid-containing compound biosynthetic process3.09E-03
84GO:0030026: cellular manganese ion homeostasis3.09E-03
85GO:0006826: iron ion transport3.09E-03
86GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process3.09E-03
87GO:0009231: riboflavin biosynthetic process3.59E-03
88GO:0016559: peroxisome fission3.59E-03
89GO:0009704: de-etiolation3.59E-03
90GO:0022900: electron transport chain4.10E-03
91GO:0019430: removal of superoxide radicals4.10E-03
92GO:0009056: catabolic process4.65E-03
93GO:0098656: anion transmembrane transport4.65E-03
94GO:0019432: triglyceride biosynthetic process4.65E-03
95GO:0009637: response to blue light4.69E-03
96GO:0009867: jasmonic acid mediated signaling pathway4.69E-03
97GO:0006099: tricarboxylic acid cycle4.90E-03
98GO:0009638: phototropism5.21E-03
99GO:0035999: tetrahydrofolate interconversion5.21E-03
100GO:0009086: methionine biosynthetic process5.21E-03
101GO:1900865: chloroplast RNA modification5.21E-03
102GO:0045036: protein targeting to chloroplast5.80E-03
103GO:0009641: shade avoidance5.80E-03
104GO:0051555: flavonol biosynthetic process5.80E-03
105GO:0009970: cellular response to sulfate starvation5.80E-03
106GO:0055062: phosphate ion homeostasis5.80E-03
107GO:0006325: chromatin organization5.80E-03
108GO:0000103: sulfate assimilation5.80E-03
109GO:0009640: photomorphogenesis6.04E-03
110GO:0018119: peptidyl-cysteine S-nitrosylation6.41E-03
111GO:0006816: calcium ion transport6.41E-03
112GO:0009682: induced systemic resistance6.41E-03
113GO:0052544: defense response by callose deposition in cell wall6.41E-03
114GO:0072593: reactive oxygen species metabolic process6.41E-03
115GO:0031347: regulation of defense response7.31E-03
116GO:2000028: regulation of photoperiodism, flowering7.70E-03
117GO:0050826: response to freezing7.70E-03
118GO:0009718: anthocyanin-containing compound biosynthetic process7.70E-03
119GO:0030048: actin filament-based movement7.70E-03
120GO:0006108: malate metabolic process7.70E-03
121GO:0006006: glucose metabolic process7.70E-03
122GO:0009585: red, far-red light phototransduction8.14E-03
123GO:0080167: response to karrikin8.18E-03
124GO:0009266: response to temperature stimulus8.37E-03
125GO:0051603: proteolysis involved in cellular protein catabolic process8.43E-03
126GO:0007031: peroxisome organization9.07E-03
127GO:0019853: L-ascorbic acid biosynthetic process9.07E-03
128GO:0010039: response to iron ion9.07E-03
129GO:0006071: glycerol metabolic process9.79E-03
130GO:0009409: response to cold1.01E-02
131GO:0006874: cellular calcium ion homeostasis1.13E-02
132GO:0006810: transport1.16E-02
133GO:0032259: methylation1.27E-02
134GO:0016226: iron-sulfur cluster assembly1.29E-02
135GO:2000022: regulation of jasmonic acid mediated signaling pathway1.29E-02
136GO:0009408: response to heat1.34E-02
137GO:0006012: galactose metabolic process1.37E-02
138GO:0009693: ethylene biosynthetic process1.37E-02
139GO:0010118: stomatal movement1.62E-02
140GO:0048510: regulation of timing of transition from vegetative to reproductive phase1.99E-02
141GO:0002229: defense response to oomycetes1.99E-02
142GO:0007623: circadian rhythm2.01E-02
143GO:0042742: defense response to bacterium2.05E-02
144GO:0009630: gravitropism2.08E-02
145GO:1901657: glycosyl compound metabolic process2.18E-02
146GO:0042128: nitrate assimilation2.80E-02
147GO:0006974: cellular response to DNA damage stimulus2.80E-02
148GO:0010411: xyloglucan metabolic process2.90E-02
149GO:0048573: photoperiodism, flowering2.90E-02
150GO:0008219: cell death3.12E-02
151GO:0018298: protein-chromophore linkage3.12E-02
152GO:0000160: phosphorelay signal transduction system3.23E-02
153GO:0009407: toxin catabolic process3.35E-02
154GO:0010218: response to far red light3.35E-02
155GO:0010043: response to zinc ion3.46E-02
156GO:0007568: aging3.46E-02
157GO:0010119: regulation of stomatal movement3.46E-02
158GO:0009631: cold acclimation3.46E-02
159GO:0005975: carbohydrate metabolic process3.79E-02
160GO:0055114: oxidation-reduction process4.40E-02
161GO:0009926: auxin polar transport4.42E-02
162GO:0009636: response to toxic substance4.80E-02
RankGO TermAdjusted P value
1GO:0004056: argininosuccinate lyase activity0.00E+00
2GO:0047501: (+)-neomenthol dehydrogenase activity0.00E+00
3GO:0004417: hydroxyethylthiazole kinase activity0.00E+00
4GO:0008928: mannose-1-phosphate guanylyltransferase (GDP) activity0.00E+00
5GO:0015142: tricarboxylic acid transmembrane transporter activity0.00E+00
6GO:0010474: glucose-1-phosphate guanylyltransferase (GDP) activity0.00E+00
7GO:0010473: GDP-galactose:myoinositol-1-phosphate guanylyltransferase activity0.00E+00
8GO:0004585: ornithine carbamoyltransferase activity0.00E+00
9GO:0047504: (-)-menthol dehydrogenase activity0.00E+00
10GO:0015205: nucleobase transmembrane transporter activity0.00E+00
11GO:0003992: N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity0.00E+00
12GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity0.00E+00
13GO:0004334: fumarylacetoacetase activity0.00E+00
14GO:0031517: red light photoreceptor activity0.00E+00
15GO:0004151: dihydroorotase activity0.00E+00
16GO:0015391: nucleobase:cation symporter activity0.00E+00
17GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity0.00E+00
18GO:0010472: GDP-galactose:glucose-1-phosphate guanylyltransferase activity0.00E+00
19GO:0010471: GDP-galactose:mannose-1-phosphate guanylyltransferase activity0.00E+00
20GO:0017077: oxidative phosphorylation uncoupler activity1.63E-05
21GO:0000254: C-4 methylsterol oxidase activity1.63E-05
22GO:0031516: far-red light photoreceptor activity2.02E-04
23GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity2.02E-04
24GO:0016784: 3-mercaptopyruvate sulfurtransferase activity2.02E-04
25GO:0080048: GDP-D-glucose phosphorylase activity2.02E-04
26GO:0046480: galactolipid galactosyltransferase activity2.02E-04
27GO:0080079: cellobiose glucosidase activity2.02E-04
28GO:0015085: calcium ion transmembrane transporter activity2.02E-04
29GO:0010475: galactose-1-phosphate guanylyltransferase (GDP) activity2.02E-04
30GO:0080047: GDP-L-galactose phosphorylase activity2.02E-04
31GO:1990841: promoter-specific chromatin binding2.02E-04
32GO:0004793: threonine aldolase activity2.02E-04
33GO:0016783: sulfurtransferase activity2.02E-04
34GO:0008732: L-allo-threonine aldolase activity2.02E-04
35GO:0010331: gibberellin binding4.52E-04
36GO:0009883: red or far-red light photoreceptor activity4.52E-04
37GO:0043425: bHLH transcription factor binding4.52E-04
38GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity4.52E-04
39GO:0004766: spermidine synthase activity4.52E-04
40GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity4.52E-04
41GO:0004477: methenyltetrahydrofolate cyclohydrolase activity4.52E-04
42GO:0000064: L-ornithine transmembrane transporter activity4.52E-04
43GO:0004046: aminoacylase activity4.52E-04
44GO:0016743: carboxyl- or carbamoyltransferase activity4.52E-04
45GO:0004061: arylformamidase activity4.52E-04
46GO:0004329: formate-tetrahydrofolate ligase activity4.52E-04
47GO:0004781: sulfate adenylyltransferase (ATP) activity7.36E-04
48GO:0017176: phosphatidylinositol N-acetylglucosaminyltransferase activity7.36E-04
49GO:0010277: chlorophyllide a oxygenase [overall] activity7.36E-04
50GO:0005310: dicarboxylic acid transmembrane transporter activity7.36E-04
51GO:0004848: ureidoglycolate hydrolase activity7.36E-04
52GO:0003962: cystathionine gamma-synthase activity7.36E-04
53GO:0003935: GTP cyclohydrolase II activity7.36E-04
54GO:0008020: G-protein coupled photoreceptor activity7.36E-04
55GO:0051537: 2 iron, 2 sulfur cluster binding8.75E-04
56GO:0042802: identical protein binding8.83E-04
57GO:0035529: NADH pyrophosphatase activity1.05E-03
58GO:0004792: thiosulfate sulfurtransferase activity1.05E-03
59GO:0008106: alcohol dehydrogenase (NADP+) activity1.05E-03
60GO:0016656: monodehydroascorbate reductase (NADH) activity1.05E-03
61GO:0004550: nucleoside diphosphate kinase activity1.05E-03
62GO:0015368: calcium:cation antiporter activity1.40E-03
63GO:0005319: lipid transporter activity1.40E-03
64GO:0015369: calcium:proton antiporter activity1.40E-03
65GO:0004356: glutamate-ammonia ligase activity1.78E-03
66GO:0004372: glycine hydroxymethyltransferase activity1.78E-03
67GO:0008177: succinate dehydrogenase (ubiquinone) activity1.78E-03
68GO:0080046: quercetin 4'-O-glucosyltransferase activity2.19E-03
69GO:0004784: superoxide dismutase activity2.19E-03
70GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity2.19E-03
71GO:0030060: L-malate dehydrogenase activity2.63E-03
72GO:0004144: diacylglycerol O-acyltransferase activity2.63E-03
73GO:0030170: pyridoxal phosphate binding2.71E-03
74GO:0016621: cinnamoyl-CoA reductase activity3.09E-03
75GO:0005085: guanyl-nucleotide exchange factor activity3.09E-03
76GO:0008375: acetylglucosaminyltransferase activity3.17E-03
77GO:0005507: copper ion binding3.22E-03
78GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity3.59E-03
79GO:0004034: aldose 1-epimerase activity3.59E-03
80GO:0050897: cobalt ion binding4.28E-03
81GO:0008047: enzyme activator activity5.80E-03
82GO:0004673: protein histidine kinase activity5.80E-03
83GO:0008168: methyltransferase activity5.93E-03
84GO:0004185: serine-type carboxypeptidase activity6.04E-03
85GO:0004129: cytochrome-c oxidase activity6.41E-03
86GO:0008378: galactosyltransferase activity7.04E-03
87GO:0016787: hydrolase activity7.42E-03
88GO:0005315: inorganic phosphate transmembrane transporter activity7.70E-03
89GO:0000155: phosphorelay sensor kinase activity7.70E-03
90GO:0042973: glucan endo-1,3-beta-D-glucosidase activity8.37E-03
91GO:0005217: intracellular ligand-gated ion channel activity9.07E-03
92GO:0004970: ionotropic glutamate receptor activity9.07E-03
93GO:0045735: nutrient reservoir activity9.63E-03
94GO:0022857: transmembrane transporter activity1.09E-02
95GO:0004176: ATP-dependent peptidase activity1.21E-02
96GO:0004386: helicase activity1.27E-02
97GO:0008514: organic anion transmembrane transporter activity1.45E-02
98GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.50E-02
99GO:0008080: N-acetyltransferase activity1.71E-02
100GO:0016853: isomerase activity1.80E-02
101GO:0050662: coenzyme binding1.80E-02
102GO:0048038: quinone binding1.99E-02
103GO:0004197: cysteine-type endopeptidase activity2.08E-02
104GO:0000156: phosphorelay response regulator activity2.18E-02
105GO:0008483: transaminase activity2.38E-02
106GO:0008237: metallopeptidase activity2.38E-02
107GO:0016413: O-acetyltransferase activity2.48E-02
108GO:0016597: amino acid binding2.48E-02
109GO:0016168: chlorophyll binding2.69E-02
110GO:0030247: polysaccharide binding2.90E-02
111GO:0008236: serine-type peptidase activity3.01E-02
112GO:0004222: metalloendopeptidase activity3.35E-02
113GO:0005515: protein binding3.56E-02
114GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors3.69E-02
115GO:0046872: metal ion binding3.70E-02
116GO:0004497: monooxygenase activity3.86E-02
117GO:0008422: beta-glucosidase activity3.93E-02
118GO:0004364: glutathione transferase activity4.30E-02
119GO:0016757: transferase activity, transferring glycosyl groups4.76E-02
120GO:0042803: protein homodimerization activity4.82E-02
121GO:0004871: signal transducer activity4.82E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast8.81E-13
2GO:0005743: mitochondrial inner membrane9.54E-05
3GO:0000152: nuclear ubiquitin ligase complex2.02E-04
4GO:0043190: ATP-binding cassette (ABC) transporter complex2.02E-04
5GO:0016604: nuclear body3.01E-04
6GO:0005764: lysosome6.01E-04
7GO:0009536: plastid7.04E-04
8GO:0005829: cytosol8.02E-04
9GO:0042646: plastid nucleoid1.05E-03
10GO:0031372: UBC13-MMS2 complex1.40E-03
11GO:0009526: plastid envelope1.40E-03
12GO:0009570: chloroplast stroma1.54E-03
13GO:0009941: chloroplast envelope1.73E-03
14GO:0009706: chloroplast inner membrane1.79E-03
15GO:0005773: vacuole2.37E-03
16GO:0005778: peroxisomal membrane2.54E-03
17GO:0031359: integral component of chloroplast outer membrane3.09E-03
18GO:0009707: chloroplast outer membrane3.71E-03
19GO:0005779: integral component of peroxisomal membrane4.10E-03
20GO:0005811: lipid particle4.10E-03
21GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.65E-03
22GO:0042644: chloroplast nucleoid4.65E-03
23GO:0009535: chloroplast thylakoid membrane8.09E-03
24GO:0016607: nuclear speck9.95E-03
25GO:0005758: mitochondrial intermembrane space1.05E-02
26GO:0042651: thylakoid membrane1.13E-02
27GO:0005623: cell1.50E-02
28GO:0009523: photosystem II1.89E-02
29GO:0009295: nucleoid2.38E-02
30GO:0016021: integral component of membrane3.29E-02
31GO:0031969: chloroplast membrane3.86E-02
<
Gene type



Gene DE type