co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G10060

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010378: temperature compensation of the circadian clock	0.00E+00
2	GO:0009667: plastid inner membrane organization	0.00E+00
3	GO:1904526: regulation of microtubule binding	0.00E+00
4	GO:0009631: cold acclimation	9.29E-12
5	GO:0009409: response to cold	2.36E-08
6	GO:0042335: cuticle development	4.63E-08
7	GO:0010025: wax biosynthetic process	4.66E-07
8	GO:0006633: fatty acid biosynthetic process	2.34E-06
9	GO:0000038: very long-chain fatty acid metabolic process	8.67E-06
10	GO:0009737: response to abscisic acid	1.52E-05
11	GO:0010143: cutin biosynthetic process	1.70E-05
12	GO:0035435: phosphate ion transmembrane transport	5.10E-05
13	GO:0045926: negative regulation of growth	7.14E-05
14	GO:0009809: lignin biosynthetic process	8.50E-05
15	GO:0050829: defense response to Gram-negative bacterium	9.52E-05
16	GO:0000302: response to reactive oxygen species	1.20E-04
17	GO:0009819: drought recovery	1.23E-04
18	GO:0009415: response to water	1.23E-04
19	GO:0006970: response to osmotic stress	1.34E-04
20	GO:0009609: response to symbiotic bacterium	1.64E-04
21	GO:0015812: gamma-aminobutyric acid transport	1.64E-04
22	GO:0080051: cutin transport	1.64E-04
23	GO:0033481: galacturonate biosynthetic process	1.64E-04
24	GO:0009414: response to water deprivation	2.10E-04
25	GO:0009611: response to wounding	2.29E-04
26	GO:0050832: defense response to fungus	2.33E-04
27	GO:0005983: starch catabolic process	3.54E-04
28	GO:0071422: succinate transmembrane transport	3.73E-04
29	GO:0031407: oxylipin metabolic process	3.73E-04
30	GO:0010289: homogalacturonan biosynthetic process	3.73E-04
31	GO:0015908: fatty acid transport	3.73E-04
32	GO:0010115: regulation of abscisic acid biosynthetic process	3.73E-04
33	GO:1901679: nucleotide transmembrane transport	3.73E-04
34	GO:0010353: response to trehalose	3.73E-04
35	GO:0015709: thiosulfate transport	3.73E-04
36	GO:0007623: circadian rhythm	3.94E-04
37	GO:0010150: leaf senescence	3.94E-04
38	GO:0006631: fatty acid metabolic process	5.00E-04
39	GO:0046168: glycerol-3-phosphate catabolic process	6.11E-04
40	GO:0080121: AMP transport	6.11E-04
41	GO:0006624: vacuolar protein processing	8.73E-04
42	GO:0015729: oxaloacetate transport	8.73E-04
43	GO:0006072: glycerol-3-phosphate metabolic process	8.73E-04
44	GO:0010031: circumnutation	8.73E-04
45	GO:0009413: response to flooding	8.73E-04
46	GO:0051259: protein oligomerization	8.73E-04
47	GO:0009416: response to light stimulus	1.04E-03
48	GO:0070417: cellular response to cold	1.05E-03
49	GO:0042631: cellular response to water deprivation	1.13E-03
50	GO:0046345: abscisic acid catabolic process	1.16E-03
51	GO:0022622: root system development	1.16E-03
52	GO:0071585: detoxification of cadmium ion	1.16E-03
53	GO:0015867: ATP transport	1.16E-03
54	GO:0010222: stem vascular tissue pattern formation	1.16E-03
55	GO:0048868: pollen tube development	1.21E-03
56	GO:0048578: positive regulation of long-day photoperiodism, flowering	1.47E-03
57	GO:0071423: malate transmembrane transport	1.47E-03
58	GO:0009697: salicylic acid biosynthetic process	1.47E-03
59	GO:0015866: ADP transport	1.80E-03
60	GO:0045962: positive regulation of development, heterochronic	1.80E-03
61	GO:0009913: epidermal cell differentiation	1.80E-03
62	GO:1900425: negative regulation of defense response to bacterium	1.80E-03
63	GO:0010286: heat acclimation	1.91E-03
64	GO:0010555: response to mannitol	2.17E-03
65	GO:0042372: phylloquinone biosynthetic process	2.17E-03
66	GO:0098655: cation transmembrane transport	2.17E-03
67	GO:0032880: regulation of protein localization	2.55E-03
68	GO:0009610: response to symbiotic fungus	2.55E-03
69	GO:0030497: fatty acid elongation	2.55E-03
70	GO:0008272: sulfate transport	2.55E-03
71	GO:1902074: response to salt	2.55E-03
72	GO:0009873: ethylene-activated signaling pathway	2.82E-03
73	GO:0007155: cell adhesion	2.95E-03
74	GO:0008610: lipid biosynthetic process	2.95E-03
75	GO:2000070: regulation of response to water deprivation	2.95E-03
76	GO:0050821: protein stabilization	2.95E-03
77	GO:0009651: response to salt stress	3.34E-03
78	GO:0009637: response to blue light	3.52E-03
79	GO:0071555: cell wall organization	3.58E-03
80	GO:0010345: suberin biosynthetic process	3.81E-03
81	GO:0098656: anion transmembrane transport	3.81E-03
82	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	3.81E-03
83	GO:0006839: mitochondrial transport	4.01E-03
84	GO:0042761: very long-chain fatty acid biosynthetic process	4.27E-03
85	GO:2000280: regulation of root development	4.27E-03
86	GO:0042542: response to hydrogen peroxide	4.35E-03
87	GO:0009744: response to sucrose	4.53E-03
88	GO:0009644: response to high light intensity	4.90E-03
89	GO:0010015: root morphogenesis	5.25E-03
90	GO:0080167: response to karrikin	5.66E-03
91	GO:0042538: hyperosmotic salinity response	5.68E-03
92	GO:0016024: CDP-diacylglycerol biosynthetic process	5.77E-03
93	GO:0045037: protein import into chloroplast stroma	5.77E-03
94	GO:0010200: response to chitin	5.91E-03
95	GO:0018107: peptidyl-threonine phosphorylation	6.30E-03
96	GO:0009725: response to hormone	6.30E-03
97	GO:0010588: cotyledon vascular tissue pattern formation	6.30E-03
98	GO:2000012: regulation of auxin polar transport	6.30E-03
99	GO:0050826: response to freezing	6.30E-03
100	GO:0048440: carpel development	6.85E-03
101	GO:0009225: nucleotide-sugar metabolic process	7.41E-03
102	GO:0070588: calcium ion transmembrane transport	7.41E-03
103	GO:0005975: carbohydrate metabolic process	7.42E-03
104	GO:0048367: shoot system development	7.44E-03
105	GO:0009833: plant-type primary cell wall biogenesis	8.00E-03
106	GO:0006869: lipid transport	8.01E-03
107	GO:0042545: cell wall modification	8.42E-03
108	GO:0030150: protein import into mitochondrial matrix	8.59E-03
109	GO:0009269: response to desiccation	9.84E-03
110	GO:0031408: oxylipin biosynthetic process	9.84E-03
111	GO:0003333: amino acid transmembrane transport	9.84E-03
112	GO:0016998: cell wall macromolecule catabolic process	9.84E-03
113	GO:0051260: protein homooligomerization	9.84E-03
114	GO:0010017: red or far-red light signaling pathway	1.05E-02
115	GO:0001944: vasculature development	1.11E-02
116	GO:0008284: positive regulation of cell proliferation	1.25E-02
117	GO:0048653: anther development	1.32E-02
118	GO:0000226: microtubule cytoskeleton organization	1.32E-02
119	GO:0010501: RNA secondary structure unwinding	1.32E-02
120	GO:0010268: brassinosteroid homeostasis	1.39E-02
121	GO:0009958: positive gravitropism	1.39E-02
122	GO:0042752: regulation of circadian rhythm	1.47E-02
123	GO:0045490: pectin catabolic process	1.51E-02
124	GO:0009749: response to glucose	1.54E-02
125	GO:0016132: brassinosteroid biosynthetic process	1.62E-02
126	GO:0006470: protein dephosphorylation	1.72E-02
127	GO:0010090: trichome morphogenesis	1.77E-02
128	GO:0010468: regulation of gene expression	1.80E-02
129	GO:0016125: sterol metabolic process	1.86E-02
130	GO:0009639: response to red or far red light	1.86E-02
131	GO:0006904: vesicle docking involved in exocytosis	1.94E-02
132	GO:0009911: positive regulation of flower development	2.10E-02
133	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.19E-02
134	GO:0006974: cellular response to DNA damage stimulus	2.27E-02
135	GO:0010411: xyloglucan metabolic process	2.36E-02
136	GO:0048481: plant ovule development	2.54E-02
137	GO:0030244: cellulose biosynthetic process	2.54E-02
138	GO:0018298: protein-chromophore linkage	2.54E-02
139	GO:0010311: lateral root formation	2.63E-02
140	GO:0009832: plant-type cell wall biogenesis	2.63E-02
141	GO:0006811: ion transport	2.72E-02
142	GO:0010218: response to far red light	2.72E-02
143	GO:0048527: lateral root development	2.82E-02
144	GO:0045087: innate immune response	3.01E-02
145	GO:0051707: response to other organism	3.60E-02
146	GO:0000209: protein polyubiquitination	3.70E-02
147	GO:0042546: cell wall biogenesis	3.70E-02
148	GO:0009965: leaf morphogenesis	3.91E-02
149	GO:0032259: methylation	4.08E-02
150	GO:0016042: lipid catabolic process	4.14E-02
151	GO:0048364: root development	4.44E-02
152	GO:0006364: rRNA processing	4.45E-02
153	GO:0009585: red, far-red light phototransduction	4.45E-02
154	GO:0051603: proteolysis involved in cellular protein catabolic process	4.56E-02
155	GO:0009753: response to jasmonic acid	4.56E-02
156	GO:0006857: oligopeptide transport	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0005534: galactose binding	0.00E+00
2	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	5.60E-09
3	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	5.60E-09
4	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	5.60E-09
5	GO:0009922: fatty acid elongase activity	2.04E-07
6	GO:0052747: sinapyl alcohol dehydrogenase activity	1.77E-06
7	GO:0070330: aromatase activity	4.89E-06
8	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.10E-05
9	GO:0018685: alkane 1-monooxygenase activity	3.42E-05
10	GO:0050521: alpha-glucan, water dikinase activity	1.64E-04
11	GO:0031957: very long-chain fatty acid-CoA ligase activity	1.64E-04
12	GO:0008909: isochorismate synthase activity	1.64E-04
13	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	1.64E-04
14	GO:0015245: fatty acid transporter activity	1.64E-04
15	GO:0016746: transferase activity, transferring acyl groups	1.68E-04
16	GO:0015117: thiosulfate transmembrane transporter activity	3.73E-04
17	GO:1901677: phosphate transmembrane transporter activity	3.73E-04
18	GO:0015180: L-alanine transmembrane transporter activity	3.73E-04
19	GO:0016629: 12-oxophytodienoate reductase activity	3.73E-04
20	GO:0001047: core promoter binding	3.73E-04
21	GO:0005310: dicarboxylic acid transmembrane transporter activity	6.11E-04
22	GO:0015141: succinate transmembrane transporter activity	6.11E-04
23	GO:0010295: (+)-abscisic acid 8'-hydroxylase activity	6.11E-04
24	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	6.11E-04
25	GO:0015189: L-lysine transmembrane transporter activity	8.73E-04
26	GO:0015181: arginine transmembrane transporter activity	8.73E-04
27	GO:0015131: oxaloacetate transmembrane transporter activity	8.73E-04
28	GO:0003883: CTP synthase activity	8.73E-04
29	GO:0005313: L-glutamate transmembrane transporter activity	1.16E-03
30	GO:0050378: UDP-glucuronate 4-epimerase activity	1.16E-03
31	GO:0080122: AMP transmembrane transporter activity	1.47E-03
32	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	1.47E-03
33	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.80E-03
34	GO:0004556: alpha-amylase activity	1.80E-03
35	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.80E-03
36	GO:0015217: ADP transmembrane transporter activity	2.17E-03
37	GO:0102391: decanoate--CoA ligase activity	2.17E-03
38	GO:0005347: ATP transmembrane transporter activity	2.17E-03
39	GO:0016621: cinnamoyl-CoA reductase activity	2.55E-03
40	GO:0009881: photoreceptor activity	2.55E-03
41	GO:0015140: malate transmembrane transporter activity	2.55E-03
42	GO:0004467: long-chain fatty acid-CoA ligase activity	2.55E-03
43	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.65E-03
44	GO:0015288: porin activity	2.95E-03
45	GO:0008289: lipid binding	3.15E-03
46	GO:0004864: protein phosphatase inhibitor activity	4.75E-03
47	GO:0003680: AT DNA binding	5.25E-03
48	GO:0015116: sulfate transmembrane transporter activity	5.77E-03
49	GO:0015114: phosphate ion transmembrane transporter activity	6.30E-03
50	GO:0005388: calcium-transporting ATPase activity	6.30E-03
51	GO:0015266: protein channel activity	6.30E-03
52	GO:0015171: amino acid transmembrane transporter activity	6.75E-03
53	GO:0045330: aspartyl esterase activity	6.75E-03
54	GO:0008083: growth factor activity	6.85E-03
55	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	6.85E-03
56	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	6.96E-03
57	GO:0030599: pectinesterase activity	8.18E-03
58	GO:0004707: MAP kinase activity	9.84E-03
59	GO:0016760: cellulose synthase (UDP-forming) activity	1.11E-02
60	GO:0018024: histone-lysine N-methyltransferase activity	1.25E-02
61	GO:0015297: antiporter activity	1.44E-02
62	GO:0010181: FMN binding	1.47E-02
63	GO:0004872: receptor activity	1.54E-02
64	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.62E-02
65	GO:0004197: cysteine-type endopeptidase activity	1.70E-02
66	GO:0016759: cellulose synthase activity	1.86E-02
67	GO:0016791: phosphatase activity	1.86E-02
68	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.92E-02
69	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.36E-02
70	GO:0004004: ATP-dependent RNA helicase activity	2.36E-02
71	GO:0016788: hydrolase activity, acting on ester bonds	2.38E-02
72	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.54E-02
73	GO:0005096: GTPase activator activity	2.63E-02
74	GO:0019825: oxygen binding	3.00E-02
75	GO:0003993: acid phosphatase activity	3.10E-02
76	GO:0052689: carboxylic ester hydrolase activity	3.20E-02
77	GO:0005516: calmodulin binding	3.21E-02
78	GO:0004722: protein serine/threonine phosphatase activity	3.79E-02
79	GO:0043621: protein self-association	3.81E-02
80	GO:0051287: NAD binding	4.12E-02
81	GO:0005506: iron ion binding	4.53E-02
82	GO:0031625: ubiquitin protein ligase binding	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0034426: etioplast membrane	0.00E+00
2	GO:0031357: integral component of chloroplast inner membrane	1.32E-06
3	GO:0046658: anchored component of plasma membrane	7.05E-06
4	GO:0009505: plant-type cell wall	3.82E-04
5	GO:0031225: anchored component of membrane	5.55E-04
6	GO:0009897: external side of plasma membrane	6.11E-04
7	GO:0009331: glycerol-3-phosphate dehydrogenase complex	8.73E-04
8	GO:0009527: plastid outer membrane	1.16E-03
9	GO:0005783: endoplasmic reticulum	2.25E-03
10	GO:0031305: integral component of mitochondrial inner membrane	2.95E-03
11	GO:0046930: pore complex	3.37E-03
12	GO:0005618: cell wall	4.80E-03
13	GO:0009941: chloroplast envelope	6.92E-03
14	GO:0005654: nucleoplasm	1.06E-02
15	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.18E-02
16	GO:0016020: membrane	1.24E-02
17	GO:0005615: extracellular space	1.69E-02
18	GO:0005694: chromosome	1.70E-02
19	GO:0000145: exocyst	1.70E-02
20	GO:0016021: integral component of membrane	1.76E-02
21	GO:0071944: cell periphery	1.77E-02
22	GO:0032580: Golgi cisterna membrane	1.86E-02
23	GO:0005778: peroxisomal membrane	1.94E-02
24	GO:0009707: chloroplast outer membrane	2.54E-02
25	GO:0005886: plasma membrane	2.77E-02
26	GO:0005802: trans-Golgi network	3.47E-02
27	GO:0005622: intracellular	3.94E-02
28	GO:0005743: mitochondrial inner membrane	3.96E-02
29	GO:0005768: endosome	4.06E-02
30	GO:0031966: mitochondrial membrane	4.23E-02
31	GO:0043231: intracellular membrane-bounded organelle	4.69E-02