co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G09760

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0044843: cell cycle G1/S phase transition	0.00E+00
2	GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process	0.00E+00
3	GO:1903857: negative regulation of cytokinin dehydrogenase activity	0.00E+00
4	GO:0046487: glyoxylate metabolic process	0.00E+00
5	GO:0007530: sex determination	0.00E+00
6	GO:1990569: UDP-N-acetylglucosamine transmembrane transport	0.00E+00
7	GO:0015789: UDP-N-acetylgalactosamine transport	0.00E+00
8	GO:0090239: regulation of histone H4 acetylation	0.00E+00
9	GO:0006412: translation	2.86E-147
10	GO:0042254: ribosome biogenesis	1.49E-53
11	GO:0000027: ribosomal large subunit assembly	4.10E-13
12	GO:0000028: ribosomal small subunit assembly	1.48E-07
13	GO:0006626: protein targeting to mitochondrion	2.40E-06
14	GO:0009735: response to cytokinin	2.56E-06
15	GO:0009955: adaxial/abaxial pattern specification	5.00E-06
16	GO:1902626: assembly of large subunit precursor of preribosome	1.99E-05
17	GO:0002181: cytoplasmic translation	1.99E-05
18	GO:0000398: mRNA splicing, via spliceosome	1.98E-04
19	GO:0009793: embryo development ending in seed dormancy	3.02E-04
20	GO:0008283: cell proliferation	3.39E-04
21	GO:0031060: regulation of histone methylation	3.55E-04
22	GO:0030490: maturation of SSU-rRNA	3.55E-04
23	GO:0006434: seryl-tRNA aminoacylation	3.55E-04
24	GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.55E-04
25	GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.55E-04
26	GO:0032365: intracellular lipid transport	3.55E-04
27	GO:0006407: rRNA export from nucleus	3.55E-04
28	GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process	3.55E-04
29	GO:0015801: aromatic amino acid transport	3.55E-04
30	GO:0048453: sepal formation	3.55E-04
31	GO:0000387: spliceosomal snRNP assembly	6.73E-04
32	GO:2000072: regulation of defense response to fungus, incompatible interaction	7.72E-04
33	GO:0048569: post-embryonic animal organ development	7.72E-04
34	GO:0043981: histone H4-K5 acetylation	7.72E-04
35	GO:0045859: regulation of protein kinase activity	7.72E-04
36	GO:0006820: anion transport	1.03E-03
37	GO:0042256: mature ribosome assembly	1.25E-03
38	GO:0010338: leaf formation	1.25E-03
39	GO:0010452: histone H3-K36 methylation	1.25E-03
40	GO:1904278: positive regulation of wax biosynthetic process	1.25E-03
41	GO:0009150: purine ribonucleotide metabolic process	1.25E-03
42	GO:0070301: cellular response to hydrogen peroxide	1.80E-03
43	GO:0006241: CTP biosynthetic process	1.80E-03
44	GO:0006165: nucleoside diphosphate phosphorylation	1.80E-03
45	GO:0006228: UTP biosynthetic process	1.80E-03
46	GO:0006164: purine nucleotide biosynthetic process	1.80E-03
47	GO:0030150: protein import into mitochondrial matrix	1.82E-03
48	GO:0006289: nucleotide-excision repair	1.82E-03
49	GO:0042274: ribosomal small subunit biogenesis	2.42E-03
50	GO:0006183: GTP biosynthetic process	2.42E-03
51	GO:1902183: regulation of shoot apical meristem development	3.09E-03
52	GO:0019408: dolichol biosynthetic process	3.09E-03
53	GO:0000413: protein peptidyl-prolyl isomerization	3.34E-03
54	GO:0051568: histone H3-K4 methylation	3.82E-03
55	GO:0000470: maturation of LSU-rRNA	3.82E-03
56	GO:0010358: leaf shaping	3.82E-03
57	GO:0000741: karyogamy	3.82E-03
58	GO:0045040: protein import into mitochondrial outer membrane	3.82E-03
59	GO:0010183: pollen tube guidance	4.16E-03
60	GO:0016444: somatic cell DNA recombination	4.60E-03
61	GO:0006458: 'de novo' protein folding	4.60E-03
62	GO:0000245: spliceosomal complex assembly	4.60E-03
63	GO:0009554: megasporogenesis	4.60E-03
64	GO:0009645: response to low light intensity stimulus	5.44E-03
65	GO:0043562: cellular response to nitrogen levels	7.25E-03
66	GO:0001558: regulation of cell growth	7.25E-03
67	GO:0030968: endoplasmic reticulum unfolded protein response	7.25E-03
68	GO:0015780: nucleotide-sugar transport	8.22E-03
69	GO:0098656: anion transmembrane transport	8.22E-03
70	GO:0007338: single fertilization	8.22E-03
71	GO:0009245: lipid A biosynthetic process	8.22E-03
72	GO:0048507: meristem development	8.22E-03
73	GO:0006189: 'de novo' IMP biosynthetic process	8.22E-03
74	GO:0048589: developmental growth	8.22E-03
75	GO:0010449: root meristem growth	9.24E-03
76	GO:0016441: posttranscriptional gene silencing	1.03E-02
77	GO:0010015: root morphogenesis	1.14E-02
78	GO:0006913: nucleocytoplasmic transport	1.14E-02
79	GO:0015770: sucrose transport	1.14E-02
80	GO:0048229: gametophyte development	1.14E-02
81	GO:0006790: sulfur compound metabolic process	1.26E-02
82	GO:0010102: lateral root morphogenesis	1.38E-02
83	GO:0010628: positive regulation of gene expression	1.38E-02
84	GO:2000028: regulation of photoperiodism, flowering	1.38E-02
85	GO:0048467: gynoecium development	1.50E-02
86	GO:0009644: response to high light intensity	1.50E-02
87	GO:0048440: carpel development	1.50E-02
88	GO:0010020: chloroplast fission	1.50E-02
89	GO:0009933: meristem structural organization	1.50E-02
90	GO:0006446: regulation of translational initiation	1.50E-02
91	GO:0009965: leaf morphogenesis	1.55E-02
92	GO:0006364: rRNA processing	1.87E-02
93	GO:0006487: protein N-linked glycosylation	1.89E-02
94	GO:0051302: regulation of cell division	2.03E-02
95	GO:0009908: flower development	2.12E-02
96	GO:0051260: protein homooligomerization	2.17E-02
97	GO:0010431: seed maturation	2.17E-02
98	GO:0006334: nucleosome assembly	2.17E-02
99	GO:0061077: chaperone-mediated protein folding	2.17E-02
100	GO:0003333: amino acid transmembrane transport	2.17E-02
101	GO:0007005: mitochondrion organization	2.31E-02
102	GO:0010082: regulation of root meristem growth	2.46E-02
103	GO:0040007: growth	2.46E-02
104	GO:0009553: embryo sac development	2.58E-02
105	GO:0010584: pollen exine formation	2.61E-02
106	GO:0048443: stamen development	2.61E-02
107	GO:0010305: leaf vascular tissue pattern formation	3.08E-02
108	GO:0010197: polar nucleus fusion	3.08E-02
109	GO:0009556: microsporogenesis	3.41E-02
110	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.58E-02
111	GO:0006635: fatty acid beta-oxidation	3.58E-02
112	GO:0015031: protein transport	3.70E-02
113	GO:0009567: double fertilization forming a zygote and endosperm	4.11E-02
114	GO:0006633: fatty acid biosynthetic process	4.17E-02
115	GO:0006413: translational initiation	4.27E-02
116	GO:0016579: protein deubiquitination	4.47E-02

Rank	GO Term	Adjusted P value
1	GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity	0.00E+00
2	GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity	0.00E+00
3	GO:0003735: structural constituent of ribosome	2.65E-173
4	GO:0003729: mRNA binding	7.79E-28
5	GO:0019843: rRNA binding	1.71E-17
6	GO:0015288: porin activity	1.20E-05
7	GO:0008097: 5S rRNA binding	4.39E-05
8	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.48E-04
9	GO:0035614: snRNA stem-loop binding	3.55E-04
10	GO:0000824: inositol tetrakisphosphate 3-kinase activity	3.55E-04
11	GO:0004828: serine-tRNA ligase activity	3.55E-04
12	GO:0004679: AMP-activated protein kinase activity	3.55E-04
13	GO:0047326: inositol tetrakisphosphate 5-kinase activity	3.55E-04
14	GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity	3.55E-04
15	GO:0005080: protein kinase C binding	3.55E-04
16	GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity	3.55E-04
17	GO:0003723: RNA binding	3.90E-04
18	GO:0008308: voltage-gated anion channel activity	4.76E-04
19	GO:0001055: RNA polymerase II activity	6.73E-04
20	GO:0015173: aromatic amino acid transmembrane transporter activity	7.72E-04
21	GO:0032934: sterol binding	7.72E-04
22	GO:0043141: ATP-dependent 5'-3' DNA helicase activity	7.72E-04
23	GO:0030619: U1 snRNA binding	7.72E-04
24	GO:0044183: protein binding involved in protein folding	9.04E-04
25	GO:0001054: RNA polymerase I activity	9.04E-04
26	GO:0001056: RNA polymerase III activity	1.03E-03
27	GO:0015266: protein channel activity	1.17E-03
28	GO:0004550: nucleoside diphosphate kinase activity	1.80E-03
29	GO:0047627: adenylylsulfatase activity	1.80E-03
30	GO:0070628: proteasome binding	2.42E-03
31	GO:0045547: dehydrodolichyl diphosphate synthase activity	3.09E-03
32	GO:0004040: amidase activity	3.09E-03
33	GO:0005275: amine transmembrane transporter activity	3.09E-03
34	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.23E-03
35	GO:0031593: polyubiquitin binding	3.82E-03
36	GO:0031177: phosphopantetheine binding	3.82E-03
37	GO:0000035: acyl binding	4.60E-03
38	GO:0019887: protein kinase regulator activity	4.60E-03
39	GO:0005338: nucleotide-sugar transmembrane transporter activity	5.44E-03
40	GO:0008235: metalloexopeptidase activity	5.44E-03
41	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	6.32E-03
42	GO:0043022: ribosome binding	6.32E-03
43	GO:0003746: translation elongation factor activity	1.07E-02
44	GO:0008515: sucrose transmembrane transporter activity	1.14E-02
45	GO:0042393: histone binding	1.22E-02
46	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.61E-02
47	GO:0051119: sugar transmembrane transporter activity	1.62E-02
48	GO:0051536: iron-sulfur cluster binding	1.89E-02
49	GO:0043130: ubiquitin binding	1.89E-02
50	GO:0005216: ion channel activity	2.03E-02
51	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	2.17E-02
52	GO:0051082: unfolded protein binding	2.66E-02
53	GO:0003684: damaged DNA binding	4.11E-02

Rank	GO Term	Adjusted P value
1	GO:0005832: chaperonin-containing T-complex	0.00E+00
2	GO:0043186: P granule	0.00E+00
3	GO:0005675: holo TFIIH complex	0.00E+00
4	GO:0005840: ribosome	2.79E-115
5	GO:0022625: cytosolic large ribosomal subunit	6.68E-101
6	GO:0022626: cytosolic ribosome	3.30E-87
7	GO:0022627: cytosolic small ribosomal subunit	7.83E-74
8	GO:0005737: cytoplasm	4.97E-34
9	GO:0005829: cytosol	3.23E-31
10	GO:0005730: nucleolus	8.54E-31
11	GO:0009506: plasmodesma	3.59E-19
12	GO:0015934: large ribosomal subunit	2.29E-16
13	GO:0015935: small ribosomal subunit	1.06E-12
14	GO:0005774: vacuolar membrane	3.11E-12
15	GO:0016020: membrane	6.75E-09
16	GO:0005618: cell wall	7.92E-07
17	GO:0005732: small nucleolar ribonucleoprotein complex	1.47E-06
18	GO:0005773: vacuole	5.22E-06
19	GO:0009507: chloroplast	1.43E-05
20	GO:0046930: pore complex	1.72E-05
21	GO:0005665: DNA-directed RNA polymerase II, core complex	6.50E-05
22	GO:0019013: viral nucleocapsid	7.95E-05
23	GO:0031359: integral component of chloroplast outer membrane	3.09E-04
24	GO:0030686: 90S preribosome	3.55E-04
25	GO:0005742: mitochondrial outer membrane translocase complex	4.76E-04
26	GO:0005736: DNA-directed RNA polymerase I complex	5.70E-04
27	GO:0005685: U1 snRNP	5.70E-04
28	GO:0005886: plasma membrane	5.98E-04
29	GO:0005666: DNA-directed RNA polymerase III complex	6.73E-04
30	GO:0071011: precatalytic spliceosome	6.73E-04
31	GO:0005681: spliceosomal complex	7.02E-04
32	GO:0035145: exon-exon junction complex	7.72E-04
33	GO:0000418: DNA-directed RNA polymerase IV complex	7.85E-04
34	GO:0071013: catalytic step 2 spliceosome	9.04E-04
35	GO:0000439: core TFIIH complex	1.25E-03
36	GO:0034719: SMN-Sm protein complex	1.25E-03
37	GO:0005853: eukaryotic translation elongation factor 1 complex	1.25E-03
38	GO:0000419: DNA-directed RNA polymerase V complex	1.64E-03
39	GO:1990726: Lsm1-7-Pat1 complex	1.80E-03
40	GO:0005758: mitochondrial intermembrane space	1.82E-03
41	GO:0005741: mitochondrial outer membrane	2.20E-03
42	GO:0016593: Cdc73/Paf1 complex	2.42E-03
43	GO:0005682: U5 snRNP	2.42E-03
44	GO:0097526: spliceosomal tri-snRNP complex	3.09E-03
45	GO:0005687: U4 snRNP	3.09E-03
46	GO:0005762: mitochondrial large ribosomal subunit	4.60E-03
47	GO:0005689: U12-type spliceosomal complex	4.60E-03
48	GO:0016272: prefoldin complex	4.60E-03
49	GO:0009706: chloroplast inner membrane	5.07E-03
50	GO:0005688: U6 snRNP	6.32E-03
51	GO:0071004: U2-type prespliceosome	6.32E-03
52	GO:0046540: U4/U6 x U5 tri-snRNP complex	7.25E-03
53	GO:0005763: mitochondrial small ribosomal subunit	8.22E-03
54	GO:0005686: U2 snRNP	1.03E-02
55	GO:0005852: eukaryotic translation initiation factor 3 complex	1.14E-02
56	GO:0048471: perinuclear region of cytoplasm	1.14E-02
57	GO:0031307: integral component of mitochondrial outer membrane	1.26E-02
58	GO:0005769: early endosome	1.76E-02
59	GO:0005622: intracellular	1.99E-02
60	GO:0070469: respiratory chain	2.03E-02
61	GO:0005743: mitochondrial inner membrane	3.46E-02
62	GO:0009536: plastid	3.49E-02
63	GO:0030529: intracellular ribonucleoprotein complex	4.65E-02
64	GO:0000932: P-body	4.65E-02