co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G09640

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071731: response to nitric oxide	0.00E+00
2	GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
3	GO:0072321: chaperone-mediated protein transport	0.00E+00
4	GO:0017126: nucleologenesis	0.00E+00
5	GO:0044843: cell cycle G1/S phase transition	0.00E+00
6	GO:0006364: rRNA processing	1.19E-07
7	GO:0042273: ribosomal large subunit biogenesis	3.53E-06
8	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.41E-04
9	GO:0034470: ncRNA processing	1.41E-04
10	GO:0051302: regulation of cell division	1.69E-04
11	GO:0006556: S-adenosylmethionine biosynthetic process	2.40E-04
12	GO:0006421: asparaginyl-tRNA aminoacylation	2.40E-04
13	GO:0045039: protein import into mitochondrial inner membrane	2.40E-04
14	GO:0009855: determination of bilateral symmetry	3.49E-04
15	GO:0006413: translational initiation	3.88E-04
16	GO:0000460: maturation of 5.8S rRNA	4.66E-04
17	GO:0010375: stomatal complex patterning	5.92E-04
18	GO:0000380: alternative mRNA splicing, via spliceosome	5.92E-04
19	GO:0000470: maturation of LSU-rRNA	7.24E-04
20	GO:0042254: ribosome biogenesis	7.52E-04
21	GO:0000054: ribosomal subunit export from nucleus	8.63E-04
22	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	8.63E-04
23	GO:0080186: developmental vegetative growth	1.01E-03
24	GO:0010374: stomatal complex development	1.01E-03
25	GO:0001558: regulation of cell growth	1.32E-03
26	GO:0022900: electron transport chain	1.32E-03
27	GO:0006412: translation	1.41E-03
28	GO:0000387: spliceosomal snRNP assembly	1.65E-03
29	GO:0010162: seed dormancy process	1.83E-03
30	GO:0006913: nucleocytoplasmic transport	2.02E-03
31	GO:0009553: embryo sac development	2.08E-03
32	GO:0006626: protein targeting to mitochondrion	2.41E-03
33	GO:0006108: malate metabolic process	2.41E-03
34	GO:0009735: response to cytokinin	2.85E-03
35	GO:0046686: response to cadmium ion	3.01E-03
36	GO:0009790: embryo development	3.11E-03
37	GO:0009944: polarity specification of adaxial/abaxial axis	3.26E-03
38	GO:0006730: one-carbon metabolic process	3.95E-03
39	GO:0007005: mitochondrion organization	3.95E-03
40	GO:0009693: ethylene biosynthetic process	4.20E-03
41	GO:0009294: DNA mediated transformation	4.20E-03
42	GO:0070417: cellular response to cold	4.69E-03
43	GO:0006606: protein import into nucleus	4.95E-03
44	GO:0009960: endosperm development	5.21E-03
45	GO:0010197: polar nucleus fusion	5.21E-03
46	GO:0071281: cellular response to iron ion	6.59E-03
47	GO:0045892: negative regulation of transcription, DNA-templated	8.54E-03
48	GO:0016049: cell growth	9.03E-03
49	GO:0009651: response to salt stress	9.62E-03
50	GO:0048527: lateral root development	1.04E-02
51	GO:0006099: tricarboxylic acid cycle	1.14E-02
52	GO:0000154: rRNA modification	1.44E-02
53	GO:0006096: glycolytic process	1.84E-02
54	GO:0016569: covalent chromatin modification	2.01E-02
55	GO:0006396: RNA processing	2.14E-02
56	GO:0009742: brassinosteroid mediated signaling pathway	2.19E-02
57	GO:0009793: embryo development ending in seed dormancy	2.26E-02
58	GO:0006414: translational elongation	2.75E-02
59	GO:0009451: RNA modification	3.15E-02
60	GO:0009723: response to ethylene	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0003963: RNA-3'-phosphate cyclase activity	0.00E+00
2	GO:0003723: RNA binding	7.99E-10
3	GO:0030515: snoRNA binding	1.82E-05
4	GO:0001055: RNA polymerase II activity	4.74E-05
5	GO:0008746: NAD(P)+ transhydrogenase activity	5.79E-05
6	GO:0004128: cytochrome-b5 reductase activity, acting on NAD(P)H	5.79E-05
7	GO:0042134: rRNA primary transcript binding	5.79E-05
8	GO:0000166: nucleotide binding	6.82E-05
9	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.25E-04
10	GO:0043021: ribonucleoprotein complex binding	1.41E-04
11	GO:0004407: histone deacetylase activity	1.52E-04
12	GO:0003735: structural constituent of ribosome	1.98E-04
13	GO:0003924: GTPase activity	2.14E-04
14	GO:0008026: ATP-dependent helicase activity	2.23E-04
15	GO:0070181: small ribosomal subunit rRNA binding	2.40E-04
16	GO:0004816: asparagine-tRNA ligase activity	2.40E-04
17	GO:0004478: methionine adenosyltransferase activity	2.40E-04
18	GO:0003743: translation initiation factor activity	5.18E-04
19	GO:0016615: malate dehydrogenase activity	7.24E-04
20	GO:0030060: L-malate dehydrogenase activity	8.63E-04
21	GO:0003746: translation elongation factor activity	8.97E-04
22	GO:0008235: metalloexopeptidase activity	1.01E-03
23	GO:0008135: translation factor activity, RNA binding	1.32E-03
24	GO:0045309: protein phosphorylated amino acid binding	1.65E-03
25	GO:0030955: potassium ion binding	1.65E-03
26	GO:0004743: pyruvate kinase activity	1.65E-03
27	GO:0019904: protein domain specific binding	2.02E-03
28	GO:0001054: RNA polymerase I activity	2.02E-03
29	GO:0001056: RNA polymerase III activity	2.21E-03
30	GO:0008080: N-acetyltransferase activity	5.21E-03
31	GO:0005515: protein binding	5.34E-03
32	GO:0005525: GTP binding	5.99E-03
33	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	9.36E-03
34	GO:0050897: cobalt ion binding	1.04E-02
35	GO:0051537: 2 iron, 2 sulfur cluster binding	1.40E-02
36	GO:0016787: hydrolase activity	2.05E-02
37	GO:0051082: unfolded protein binding	2.10E-02
38	GO:0019843: rRNA binding	2.46E-02
39	GO:0008565: protein transporter activity	2.80E-02
40	GO:0003824: catalytic activity	4.09E-02
41	GO:0000287: magnesium ion binding	4.17E-02

Rank	GO Term	Adjusted P value
1	GO:0042719: mitochondrial intermembrane space protein transporter complex	0.00E+00
2	GO:0034457: Mpp10 complex	0.00E+00
3	GO:0005730: nucleolus	6.30E-25
4	GO:0032040: small-subunit processome	9.52E-07
5	GO:0005834: heterotrimeric G-protein complex	8.32E-06
6	GO:0030687: preribosome, large subunit precursor	1.82E-05
7	GO:0000418: DNA-directed RNA polymerase IV complex	5.71E-05
8	GO:0005665: DNA-directed RNA polymerase II, core complex	7.94E-05
9	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	8.78E-05
10	GO:0022625: cytosolic large ribosomal subunit	1.20E-04
11	GO:0000419: DNA-directed RNA polymerase V complex	1.35E-04
12	GO:0070545: PeBoW complex	1.41E-04
13	GO:0005618: cell wall	1.88E-04
14	GO:0030130: clathrin coat of trans-Golgi network vesicle	2.40E-04
15	GO:0030132: clathrin coat of coated pit	2.40E-04
16	GO:0030529: intracellular ribonucleoprotein complex	5.54E-04
17	GO:0005737: cytoplasm	6.45E-04
18	GO:0031428: box C/D snoRNP complex	7.24E-04
19	GO:0015934: large ribosomal subunit	8.23E-04
20	GO:0016363: nuclear matrix	8.63E-04
21	GO:0034399: nuclear periphery	1.16E-03
22	GO:0005736: DNA-directed RNA polymerase I complex	1.48E-03
23	GO:0005635: nuclear envelope	1.62E-03
24	GO:0005666: DNA-directed RNA polymerase III complex	1.65E-03
25	GO:0015030: Cajal body	1.65E-03
26	GO:0005829: cytosol	1.93E-03
27	GO:0005852: eukaryotic translation initiation factor 3 complex	2.02E-03
28	GO:0005634: nucleus	2.17E-03
29	GO:0031307: integral component of mitochondrial outer membrane	2.21E-03
30	GO:0019013: viral nucleocapsid	2.41E-03
31	GO:0005774: vacuolar membrane	2.57E-03
32	GO:0005654: nucleoplasm	2.61E-03
33	GO:0005758: mitochondrial intermembrane space	3.26E-03
34	GO:0005759: mitochondrial matrix	3.35E-03
35	GO:0009532: plastid stroma	3.72E-03
36	GO:0005741: mitochondrial outer membrane	3.72E-03
37	GO:0022627: cytosolic small ribosomal subunit	4.85E-03
38	GO:0010319: stromule	7.18E-03
39	GO:0005840: ribosome	8.28E-03
40	GO:0005743: mitochondrial inner membrane	9.64E-03
41	GO:0022626: cytosolic ribosome	1.77E-02
42	GO:0005747: mitochondrial respiratory chain complex I	1.88E-02
43	GO:0005732: small nucleolar ribonucleoprotein complex	2.23E-02
44	GO:0005623: cell	2.51E-02
45	GO:0005622: intracellular	3.28E-02
46	GO:0009505: plant-type cell wall	4.67E-02