GO Enrichment Analysis of Co-expressed Genes with
AT1G09390
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 2 | GO:0046838: phosphorylated carbohydrate dephosphorylation | 0.00E+00 |
| 3 | GO:2000042: negative regulation of double-strand break repair via homologous recombination | 0.00E+00 |
| 4 | GO:0006114: glycerol biosynthetic process | 0.00E+00 |
| 5 | GO:0015979: photosynthesis | 1.90E-05 |
| 6 | GO:1901259: chloroplast rRNA processing | 6.00E-05 |
| 7 | GO:0000476: maturation of 4.5S rRNA | 1.48E-04 |
| 8 | GO:0000967: rRNA 5'-end processing | 1.48E-04 |
| 9 | GO:0046167: glycerol-3-phosphate biosynthetic process | 1.48E-04 |
| 10 | GO:0043007: maintenance of rDNA | 1.48E-04 |
| 11 | GO:0010027: thylakoid membrane organization | 1.65E-04 |
| 12 | GO:0018026: peptidyl-lysine monomethylation | 3.38E-04 |
| 13 | GO:0034470: ncRNA processing | 3.38E-04 |
| 14 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 3.38E-04 |
| 15 | GO:0006650: glycerophospholipid metabolic process | 3.38E-04 |
| 16 | GO:0019853: L-ascorbic acid biosynthetic process | 4.40E-04 |
| 17 | GO:0006954: inflammatory response | 5.54E-04 |
| 18 | GO:0005977: glycogen metabolic process | 5.54E-04 |
| 19 | GO:0046168: glycerol-3-phosphate catabolic process | 5.54E-04 |
| 20 | GO:0009405: pathogenesis | 5.54E-04 |
| 21 | GO:0009658: chloroplast organization | 6.12E-04 |
| 22 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 7.93E-04 |
| 23 | GO:2001141: regulation of RNA biosynthetic process | 7.93E-04 |
| 24 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 7.93E-04 |
| 25 | GO:0009102: biotin biosynthetic process | 7.93E-04 |
| 26 | GO:0010239: chloroplast mRNA processing | 7.93E-04 |
| 27 | GO:0006072: glycerol-3-phosphate metabolic process | 7.93E-04 |
| 28 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 7.93E-04 |
| 29 | GO:0006021: inositol biosynthetic process | 1.05E-03 |
| 30 | GO:0010021: amylopectin biosynthetic process | 1.05E-03 |
| 31 | GO:0006221: pyrimidine nucleotide biosynthetic process | 1.05E-03 |
| 32 | GO:0016558: protein import into peroxisome matrix | 1.33E-03 |
| 33 | GO:0007094: mitotic spindle assembly checkpoint | 1.33E-03 |
| 34 | GO:0042793: transcription from plastid promoter | 1.63E-03 |
| 35 | GO:0010190: cytochrome b6f complex assembly | 1.63E-03 |
| 36 | GO:0042549: photosystem II stabilization | 1.63E-03 |
| 37 | GO:0046855: inositol phosphate dephosphorylation | 1.63E-03 |
| 38 | GO:0015995: chlorophyll biosynthetic process | 2.17E-03 |
| 39 | GO:0016311: dephosphorylation | 2.29E-03 |
| 40 | GO:0009817: defense response to fungus, incompatible interaction | 2.40E-03 |
| 41 | GO:0030091: protein repair | 2.66E-03 |
| 42 | GO:0006605: protein targeting | 2.66E-03 |
| 43 | GO:0000105: histidine biosynthetic process | 2.66E-03 |
| 44 | GO:0009231: riboflavin biosynthetic process | 2.66E-03 |
| 45 | GO:0009642: response to light intensity | 2.66E-03 |
| 46 | GO:0006353: DNA-templated transcription, termination | 2.66E-03 |
| 47 | GO:0007568: aging | 2.77E-03 |
| 48 | GO:0017004: cytochrome complex assembly | 3.04E-03 |
| 49 | GO:0071482: cellular response to light stimulus | 3.04E-03 |
| 50 | GO:0010205: photoinhibition | 3.86E-03 |
| 51 | GO:0006779: porphyrin-containing compound biosynthetic process | 3.86E-03 |
| 52 | GO:0006782: protoporphyrinogen IX biosynthetic process | 4.29E-03 |
| 53 | GO:0019684: photosynthesis, light reaction | 4.73E-03 |
| 54 | GO:0009089: lysine biosynthetic process via diaminopimelate | 4.73E-03 |
| 55 | GO:0072593: reactive oxygen species metabolic process | 4.73E-03 |
| 56 | GO:1903507: negative regulation of nucleic acid-templated transcription | 4.73E-03 |
| 57 | GO:0006352: DNA-templated transcription, initiation | 4.73E-03 |
| 58 | GO:0006790: sulfur compound metabolic process | 5.20E-03 |
| 59 | GO:0005983: starch catabolic process | 5.20E-03 |
| 60 | GO:0006810: transport | 5.38E-03 |
| 61 | GO:0005975: carbohydrate metabolic process | 5.70E-03 |
| 62 | GO:0009266: response to temperature stimulus | 6.17E-03 |
| 63 | GO:0006412: translation | 6.21E-03 |
| 64 | GO:0010030: positive regulation of seed germination | 6.67E-03 |
| 65 | GO:0046854: phosphatidylinositol phosphorylation | 6.67E-03 |
| 66 | GO:0006636: unsaturated fatty acid biosynthetic process | 7.20E-03 |
| 67 | GO:0006863: purine nucleobase transport | 7.20E-03 |
| 68 | GO:0000162: tryptophan biosynthetic process | 7.20E-03 |
| 69 | GO:0019953: sexual reproduction | 8.29E-03 |
| 70 | GO:0051321: meiotic cell cycle | 8.85E-03 |
| 71 | GO:0048511: rhythmic process | 8.85E-03 |
| 72 | GO:0019915: lipid storage | 8.85E-03 |
| 73 | GO:0061077: chaperone-mediated protein folding | 8.85E-03 |
| 74 | GO:0048278: vesicle docking | 8.85E-03 |
| 75 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 9.43E-03 |
| 76 | GO:0071369: cellular response to ethylene stimulus | 1.00E-02 |
| 77 | GO:0006012: galactose metabolic process | 1.00E-02 |
| 78 | GO:0009306: protein secretion | 1.06E-02 |
| 79 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 1.13E-02 |
| 80 | GO:0006633: fatty acid biosynthetic process | 1.18E-02 |
| 81 | GO:0000413: protein peptidyl-prolyl isomerization | 1.19E-02 |
| 82 | GO:0042631: cellular response to water deprivation | 1.19E-02 |
| 83 | GO:0061025: membrane fusion | 1.32E-02 |
| 84 | GO:0006814: sodium ion transport | 1.32E-02 |
| 85 | GO:0042752: regulation of circadian rhythm | 1.32E-02 |
| 86 | GO:0007059: chromosome segregation | 1.32E-02 |
| 87 | GO:0019252: starch biosynthetic process | 1.39E-02 |
| 88 | GO:0008654: phospholipid biosynthetic process | 1.39E-02 |
| 89 | GO:0055072: iron ion homeostasis | 1.39E-02 |
| 90 | GO:0006635: fatty acid beta-oxidation | 1.45E-02 |
| 91 | GO:0010193: response to ozone | 1.45E-02 |
| 92 | GO:0010583: response to cyclopentenone | 1.52E-02 |
| 93 | GO:0032502: developmental process | 1.52E-02 |
| 94 | GO:0008380: RNA splicing | 1.55E-02 |
| 95 | GO:0009627: systemic acquired resistance | 2.04E-02 |
| 96 | GO:0006906: vesicle fusion | 2.04E-02 |
| 97 | GO:0080167: response to karrikin | 2.49E-02 |
| 98 | GO:0009867: jasmonic acid mediated signaling pathway | 2.70E-02 |
| 99 | GO:0009637: response to blue light | 2.70E-02 |
| 100 | GO:0006887: exocytosis | 3.05E-02 |
| 101 | GO:0010114: response to red light | 3.23E-02 |
| 102 | GO:0051707: response to other organism | 3.23E-02 |
| 103 | GO:0032259: methylation | 3.52E-02 |
| 104 | GO:0016042: lipid catabolic process | 3.57E-02 |
| 105 | GO:0031347: regulation of defense response | 3.71E-02 |
| 106 | GO:0006397: mRNA processing | 3.83E-02 |
| 107 | GO:0006364: rRNA processing | 4.00E-02 |
| 108 | GO:0010224: response to UV-B | 4.10E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity | 0.00E+00 |
| 2 | GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity | 0.00E+00 |
| 3 | GO:0004076: biotin synthase activity | 0.00E+00 |
| 4 | GO:0043136: glycerol-3-phosphatase activity | 0.00E+00 |
| 5 | GO:0000121: glycerol-1-phosphatase activity | 0.00E+00 |
| 6 | GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity | 0.00E+00 |
| 7 | GO:0010349: L-galactose dehydrogenase activity | 0.00E+00 |
| 8 | GO:0042623: ATPase activity, coupled | 0.00E+00 |
| 9 | GO:0019843: rRNA binding | 1.47E-05 |
| 10 | GO:0004045: aminoacyl-tRNA hydrolase activity | 1.75E-05 |
| 11 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.90E-05 |
| 12 | GO:0019203: carbohydrate phosphatase activity | 1.48E-04 |
| 13 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 1.48E-04 |
| 14 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 1.48E-04 |
| 15 | GO:0050308: sugar-phosphatase activity | 1.48E-04 |
| 16 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 3.38E-04 |
| 17 | GO:0019156: isoamylase activity | 3.38E-04 |
| 18 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 3.38E-04 |
| 19 | GO:0042389: omega-3 fatty acid desaturase activity | 3.38E-04 |
| 20 | GO:0052832: inositol monophosphate 3-phosphatase activity | 3.38E-04 |
| 21 | GO:0008934: inositol monophosphate 1-phosphatase activity | 3.38E-04 |
| 22 | GO:0052833: inositol monophosphate 4-phosphatase activity | 3.38E-04 |
| 23 | GO:0005528: FK506 binding | 5.43E-04 |
| 24 | GO:0090729: toxin activity | 5.54E-04 |
| 25 | GO:0004751: ribose-5-phosphate isomerase activity | 5.54E-04 |
| 26 | GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity | 5.54E-04 |
| 27 | GO:0008508: bile acid:sodium symporter activity | 7.93E-04 |
| 28 | GO:0009041: uridylate kinase activity | 7.93E-04 |
| 29 | GO:0016851: magnesium chelatase activity | 7.93E-04 |
| 30 | GO:0016279: protein-lysine N-methyltransferase activity | 1.05E-03 |
| 31 | GO:0001053: plastid sigma factor activity | 1.05E-03 |
| 32 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.05E-03 |
| 33 | GO:0080032: methyl jasmonate esterase activity | 1.05E-03 |
| 34 | GO:0016987: sigma factor activity | 1.05E-03 |
| 35 | GO:0004556: alpha-amylase activity | 1.63E-03 |
| 36 | GO:0004462: lactoylglutathione lyase activity | 1.63E-03 |
| 37 | GO:2001070: starch binding | 1.63E-03 |
| 38 | GO:0080030: methyl indole-3-acetate esterase activity | 1.63E-03 |
| 39 | GO:0042578: phosphoric ester hydrolase activity | 1.63E-03 |
| 40 | GO:0008195: phosphatidate phosphatase activity | 1.96E-03 |
| 41 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 1.96E-03 |
| 42 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 1.96E-03 |
| 43 | GO:0004033: aldo-keto reductase (NADP) activity | 2.66E-03 |
| 44 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 3.04E-03 |
| 45 | GO:0003993: acid phosphatase activity | 3.17E-03 |
| 46 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 3.44E-03 |
| 47 | GO:0016788: hydrolase activity, acting on ester bonds | 3.65E-03 |
| 48 | GO:0051537: 2 iron, 2 sulfur cluster binding | 4.22E-03 |
| 49 | GO:0003714: transcription corepressor activity | 7.74E-03 |
| 50 | GO:0008026: ATP-dependent helicase activity | 7.91E-03 |
| 51 | GO:0043424: protein histidine kinase binding | 8.29E-03 |
| 52 | GO:0005345: purine nucleobase transmembrane transporter activity | 8.29E-03 |
| 53 | GO:0048038: quinone binding | 1.45E-02 |
| 54 | GO:0008483: transaminase activity | 1.74E-02 |
| 55 | GO:0008168: methyltransferase activity | 1.93E-02 |
| 56 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.28E-02 |
| 57 | GO:0030145: manganese ion binding | 2.53E-02 |
| 58 | GO:0052689: carboxylic ester hydrolase activity | 2.75E-02 |
| 59 | GO:0000149: SNARE binding | 2.87E-02 |
| 60 | GO:0003735: structural constituent of ribosome | 2.95E-02 |
| 61 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.96E-02 |
| 62 | GO:0005484: SNAP receptor activity | 3.23E-02 |
| 63 | GO:0043621: protein self-association | 3.42E-02 |
| 64 | GO:0003723: RNA binding | 3.71E-02 |
| 65 | GO:0051287: NAD binding | 3.71E-02 |
| 66 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.00E-02 |
| 67 | GO:0045735: nutrient reservoir activity | 4.50E-02 |
| 68 | GO:0004650: polygalacturonase activity | 4.81E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010368: chloroplast isoamylase complex | 0.00E+00 |
| 2 | GO:0009349: riboflavin synthase complex | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 5.99E-30 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 1.30E-10 |
| 5 | GO:0009570: chloroplast stroma | 2.64E-09 |
| 6 | GO:0009579: thylakoid | 3.35E-07 |
| 7 | GO:0009543: chloroplast thylakoid lumen | 7.39E-07 |
| 8 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 1.08E-06 |
| 9 | GO:0009538: photosystem I reaction center | 1.36E-06 |
| 10 | GO:0009534: chloroplast thylakoid | 4.07E-06 |
| 11 | GO:0042646: plastid nucleoid | 9.39E-06 |
| 12 | GO:0009533: chloroplast stromal thylakoid | 8.05E-05 |
| 13 | GO:0009941: chloroplast envelope | 1.56E-04 |
| 14 | GO:0042644: chloroplast nucleoid | 1.60E-04 |
| 15 | GO:0030095: chloroplast photosystem II | 3.92E-04 |
| 16 | GO:0010007: magnesium chelatase complex | 5.54E-04 |
| 17 | GO:0009331: glycerol-3-phosphate dehydrogenase complex | 7.93E-04 |
| 18 | GO:0005828: kinetochore microtubule | 1.05E-03 |
| 19 | GO:0000776: kinetochore | 1.33E-03 |
| 20 | GO:0030529: intracellular ribonucleoprotein complex | 1.85E-03 |
| 21 | GO:0000777: condensed chromosome kinetochore | 1.96E-03 |
| 22 | GO:0005840: ribosome | 2.98E-03 |
| 23 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 3.44E-03 |
| 24 | GO:0031977: thylakoid lumen | 3.60E-03 |
| 25 | GO:0005876: spindle microtubule | 3.86E-03 |
| 26 | GO:0055028: cortical microtubule | 4.29E-03 |
| 27 | GO:0012511: monolayer-surrounded lipid storage body | 4.73E-03 |
| 28 | GO:0009508: plastid chromosome | 5.68E-03 |
| 29 | GO:0010287: plastoglobule | 8.86E-03 |
| 30 | GO:0009524: phragmoplast | 9.86E-03 |
| 31 | GO:0009523: photosystem II | 1.39E-02 |
| 32 | GO:0009504: cell plate | 1.39E-02 |
| 33 | GO:0005778: peroxisomal membrane | 1.74E-02 |
| 34 | GO:0009295: nucleoid | 1.74E-02 |
| 35 | GO:0015934: large ribosomal subunit | 2.53E-02 |
| 36 | GO:0031225: anchored component of membrane | 2.78E-02 |
| 37 | GO:0031201: SNARE complex | 3.05E-02 |