co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G09030

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
2	GO:0002184: cytoplasmic translational termination	0.00E+00
3	GO:0030155: regulation of cell adhesion	0.00E+00
4	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
5	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
6	GO:0018026: peptidyl-lysine monomethylation	5.86E-07
7	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	5.26E-06
8	GO:0015979: photosynthesis	6.61E-05
9	GO:0032544: plastid translation	7.89E-05
10	GO:0043007: maintenance of rDNA	1.06E-04
11	GO:0009773: photosynthetic electron transport in photosystem I	1.65E-04
12	GO:0031648: protein destabilization	2.48E-04
13	GO:0048281: inflorescence morphogenesis	4.12E-04
14	GO:0061077: chaperone-mediated protein folding	4.23E-04
15	GO:0010148: transpiration	5.92E-04
16	GO:1901332: negative regulation of lateral root development	5.92E-04
17	GO:0006552: leucine catabolic process	7.86E-04
18	GO:0010021: amylopectin biosynthetic process	7.86E-04
19	GO:0006808: regulation of nitrogen utilization	7.86E-04
20	GO:0016120: carotene biosynthetic process	9.92E-04
21	GO:0010027: thylakoid membrane organization	1.19E-03
22	GO:0042793: transcription from plastid promoter	1.21E-03
23	GO:0010190: cytochrome b6f complex assembly	1.21E-03
24	GO:0015995: chlorophyll biosynthetic process	1.40E-03
25	GO:0042026: protein refolding	1.45E-03
26	GO:0006458: 'de novo' protein folding	1.45E-03
27	GO:0070370: cellular heat acclimation	1.70E-03
28	GO:0022904: respiratory electron transport chain	1.70E-03
29	GO:0010103: stomatal complex morphogenesis	1.70E-03
30	GO:0009631: cold acclimation	1.78E-03
31	GO:0005978: glycogen biosynthetic process	1.97E-03
32	GO:0006353: DNA-templated transcription, termination	1.97E-03
33	GO:0009658: chloroplast organization	2.00E-03
34	GO:0042254: ribosome biogenesis	2.05E-03
35	GO:0001558: regulation of cell growth	2.24E-03
36	GO:0006412: translation	2.28E-03
37	GO:0006810: transport	2.41E-03
38	GO:0051865: protein autoubiquitination	2.53E-03
39	GO:0010206: photosystem II repair	2.53E-03
40	GO:0005982: starch metabolic process	2.84E-03
41	GO:0048829: root cap development	3.15E-03
42	GO:0010015: root morphogenesis	3.47E-03
43	GO:0006415: translational termination	3.47E-03
44	GO:0019684: photosynthesis, light reaction	3.47E-03
45	GO:0009089: lysine biosynthetic process via diaminopimelate	3.47E-03
46	GO:0009073: aromatic amino acid family biosynthetic process	3.47E-03
47	GO:0071365: cellular response to auxin stimulus	3.81E-03
48	GO:0010628: positive regulation of gene expression	4.16E-03
49	GO:0006302: double-strand break repair	4.52E-03
50	GO:0009266: response to temperature stimulus	4.52E-03
51	GO:0010030: positive regulation of seed germination	4.88E-03
52	GO:0006636: unsaturated fatty acid biosynthetic process	5.26E-03
53	GO:0009944: polarity specification of adaxial/abaxial axis	5.65E-03
54	GO:0051302: regulation of cell division	6.05E-03
55	GO:0019915: lipid storage	6.46E-03
56	GO:0051321: meiotic cell cycle	6.46E-03
57	GO:2000022: regulation of jasmonic acid mediated signaling pathway	6.87E-03
58	GO:0001944: vasculature development	7.30E-03
59	GO:0009735: response to cytokinin	7.96E-03
60	GO:0016117: carotenoid biosynthetic process	8.19E-03
61	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	8.19E-03
62	GO:0055114: oxidation-reduction process	8.28E-03
63	GO:0009409: response to cold	8.37E-03
64	GO:0042631: cellular response to water deprivation	8.64E-03
65	GO:0009646: response to absence of light	9.58E-03
66	GO:0019252: starch biosynthetic process	1.01E-02
67	GO:0009627: systemic acquired resistance	1.48E-02
68	GO:0080167: response to karrikin	1.58E-02
69	GO:0009817: defense response to fungus, incompatible interaction	1.65E-02
70	GO:0009834: plant-type secondary cell wall biogenesis	1.77E-02
71	GO:0042742: defense response to bacterium	2.18E-02
72	GO:0009965: leaf morphogenesis	2.54E-02
73	GO:0009664: plant-type cell wall organization	2.75E-02
74	GO:0006096: glycolytic process	3.26E-02
75	GO:0045893: positive regulation of transcription, DNA-templated	4.73E-02
76	GO:0009790: embryo development	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
2	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
3	GO:0016166: phytoene dehydrogenase activity	0.00E+00
4	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
5	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
6	GO:0048039: ubiquinone binding	0.00E+00
7	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
8	GO:0019843: rRNA binding	4.75E-06
9	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	9.95E-06
10	GO:0016279: protein-lysine N-methyltransferase activity	9.95E-06
11	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	1.06E-04
12	GO:0003844: 1,4-alpha-glucan branching enzyme activity	2.48E-04
13	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	2.48E-04
14	GO:0042389: omega-3 fatty acid desaturase activity	2.48E-04
15	GO:0016868: intramolecular transferase activity, phosphotransferases	2.48E-04
16	GO:0005528: FK506 binding	3.49E-04
17	GO:0043169: cation binding	4.12E-04
18	GO:0017150: tRNA dihydrouridine synthase activity	4.12E-04
19	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	5.92E-04
20	GO:0016851: magnesium chelatase activity	5.92E-04
21	GO:0016149: translation release factor activity, codon specific	5.92E-04
22	GO:0043023: ribosomal large subunit binding	5.92E-04
23	GO:0019199: transmembrane receptor protein kinase activity	7.86E-04
24	GO:0042277: peptide binding	7.86E-04
25	GO:0048038: quinone binding	8.40E-04
26	GO:0003735: structural constituent of ribosome	1.08E-03
27	GO:0080030: methyl indole-3-acetate esterase activity	1.21E-03
28	GO:0051920: peroxiredoxin activity	1.45E-03
29	GO:0004033: aldo-keto reductase (NADP) activity	1.97E-03
30	GO:0016209: antioxidant activity	1.97E-03
31	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.24E-03
32	GO:0003747: translation release factor activity	2.53E-03
33	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.90E-03
34	GO:0044183: protein binding involved in protein folding	3.47E-03
35	GO:0009055: electron carrier activity	4.70E-03
36	GO:0008408: 3'-5' exonuclease activity	6.46E-03
37	GO:0030570: pectate lyase activity	7.30E-03
38	GO:0016788: hydrolase activity, acting on ester bonds	1.30E-02
39	GO:0008236: serine-type peptidase activity	1.59E-02
40	GO:0030145: manganese ion binding	1.83E-02
41	GO:0005509: calcium ion binding	1.97E-02
42	GO:0051539: 4 iron, 4 sulfur cluster binding	2.14E-02
43	GO:0043621: protein self-association	2.47E-02
44	GO:0051537: 2 iron, 2 sulfur cluster binding	2.47E-02
45	GO:0016491: oxidoreductase activity	3.07E-02
46	GO:0051082: unfolded protein binding	3.72E-02
47	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.45E-02
48	GO:0016829: lyase activity	4.61E-02
49	GO:0004252: serine-type endopeptidase activity	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
3	GO:0009507: chloroplast	2.73E-24
4	GO:0009570: chloroplast stroma	4.42E-14
5	GO:0009534: chloroplast thylakoid	6.50E-12
6	GO:0009543: chloroplast thylakoid lumen	1.39E-10
7	GO:0009941: chloroplast envelope	7.63E-10
8	GO:0009535: chloroplast thylakoid membrane	9.60E-10
9	GO:0009579: thylakoid	2.61E-09
10	GO:0031977: thylakoid lumen	3.75E-07
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.27E-06
12	GO:0009654: photosystem II oxygen evolving complex	1.31E-05
13	GO:0019898: extrinsic component of membrane	4.38E-05
14	GO:0000791: euchromatin	1.06E-04
15	GO:0000427: plastid-encoded plastid RNA polymerase complex	2.48E-04
16	GO:0030870: Mre11 complex	2.48E-04
17	GO:0030095: chloroplast photosystem II	2.49E-04
18	GO:0010007: magnesium chelatase complex	4.12E-04
19	GO:0009509: chromoplast	4.12E-04
20	GO:0000795: synaptonemal complex	9.92E-04
21	GO:0009295: nucleoid	1.07E-03
22	GO:0005840: ribosome	1.33E-03
23	GO:0031305: integral component of mitochondrial inner membrane	1.97E-03
24	GO:0009501: amyloplast	1.97E-03
25	GO:0005740: mitochondrial envelope	3.15E-03
26	GO:0009508: plastid chromosome	4.16E-03
27	GO:0010287: plastoglobule	5.63E-03
28	GO:0042651: thylakoid membrane	6.05E-03
29	GO:0000785: chromatin	1.11E-02
30	GO:0010319: stromule	1.26E-02
31	GO:0015934: large ribosomal subunit	1.83E-02
32	GO:0048046: apoplast	3.65E-02
33	GO:0022626: cytosolic ribosome	3.95E-02