Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G09010

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0071000: response to magnetism0.00E+00
2GO:0046460: neutral lipid biosynthetic process0.00E+00
3GO:0016576: histone dephosphorylation0.00E+00
4GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
5GO:0009583: detection of light stimulus0.00E+00
6GO:0046294: formaldehyde catabolic process0.00E+00
7GO:0048856: anatomical structure development0.00E+00
8GO:0010343: singlet oxygen-mediated programmed cell death5.86E-07
9GO:0072387: flavin adenine dinucleotide metabolic process1.06E-04
10GO:1902265: abscisic acid homeostasis1.06E-04
11GO:0010617: circadian regulation of calcium ion oscillation2.48E-04
12GO:0099402: plant organ development2.48E-04
13GO:0035335: peptidyl-tyrosine dephosphorylation2.48E-04
14GO:0043039: tRNA aminoacylation2.48E-04
15GO:1901529: positive regulation of anion channel activity2.48E-04
16GO:0043617: cellular response to sucrose starvation4.12E-04
17GO:0045739: positive regulation of DNA repair4.12E-04
18GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation4.12E-04
19GO:0031022: nuclear migration along microfilament4.12E-04
20GO:1902448: positive regulation of shade avoidance4.12E-04
21GO:0006591: ornithine metabolic process4.12E-04
22GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway4.12E-04
23GO:1901672: positive regulation of systemic acquired resistance4.12E-04
24GO:1901332: negative regulation of lateral root development5.92E-04
25GO:1902476: chloride transmembrane transport5.92E-04
26GO:0009646: response to absence of light7.35E-04
27GO:1902347: response to strigolactone7.86E-04
28GO:0009902: chloroplast relocation7.86E-04
29GO:0034613: cellular protein localization7.86E-04
30GO:0031935: regulation of chromatin silencing7.86E-04
31GO:0006552: leucine catabolic process7.86E-04
32GO:0051567: histone H3-K9 methylation7.86E-04
33GO:0006749: glutathione metabolic process7.86E-04
34GO:0010117: photoprotection9.92E-04
35GO:0046283: anthocyanin-containing compound metabolic process9.92E-04
36GO:0010375: stomatal complex patterning9.92E-04
37GO:0016120: carotene biosynthetic process9.92E-04
38GO:0000304: response to singlet oxygen9.92E-04
39GO:0060918: auxin transport1.21E-03
40GO:0016458: gene silencing1.21E-03
41GO:0010304: PSII associated light-harvesting complex II catabolic process1.21E-03
42GO:0016070: RNA metabolic process1.21E-03
43GO:0031053: primary miRNA processing1.21E-03
44GO:0045962: positive regulation of development, heterochronic1.21E-03
45GO:1901371: regulation of leaf morphogenesis1.21E-03
46GO:0010016: shoot system morphogenesis1.45E-03
47GO:0009903: chloroplast avoidance movement1.45E-03
48GO:0010019: chloroplast-nucleus signaling pathway1.45E-03
49GO:0010555: response to mannitol1.45E-03
50GO:0010310: regulation of hydrogen peroxide metabolic process1.45E-03
51GO:2000067: regulation of root morphogenesis1.45E-03
52GO:0010244: response to low fluence blue light stimulus by blue low-fluence system1.45E-03
53GO:0034389: lipid particle organization1.45E-03
54GO:0006821: chloride transport1.70E-03
55GO:0051510: regulation of unidimensional cell growth1.70E-03
56GO:0080111: DNA demethylation1.70E-03
57GO:0009637: response to blue light1.94E-03
58GO:0009704: de-etiolation1.97E-03
59GO:0045292: mRNA cis splicing, via spliceosome1.97E-03
60GO:0010928: regulation of auxin mediated signaling pathway1.97E-03
61GO:0009787: regulation of abscisic acid-activated signaling pathway1.97E-03
62GO:0042255: ribosome assembly1.97E-03
63GO:0006526: arginine biosynthetic process2.24E-03
64GO:0022900: electron transport chain2.24E-03
65GO:0007186: G-protein coupled receptor signaling pathway2.24E-03
66GO:0009744: response to sucrose2.49E-03
67GO:0015780: nucleotide-sugar transport2.53E-03
68GO:0019432: triglyceride biosynthetic process2.53E-03
69GO:0009965: leaf morphogenesis2.80E-03
70GO:1900426: positive regulation of defense response to bacterium2.84E-03
71GO:0009638: phototropism2.84E-03
72GO:0043085: positive regulation of catalytic activity3.47E-03
73GO:0009750: response to fructose3.47E-03
74GO:0032259: methylation4.07E-03
75GO:0030048: actin filament-based movement4.16E-03
76GO:0010075: regulation of meristem growth4.16E-03
77GO:0009785: blue light signaling pathway4.16E-03
78GO:0006071: glycerol metabolic process5.26E-03
79GO:0000162: tryptophan biosynthetic process5.26E-03
80GO:0006289: nucleotide-excision repair5.65E-03
81GO:2000377: regulation of reactive oxygen species metabolic process5.65E-03
82GO:0006418: tRNA aminoacylation for protein translation6.05E-03
83GO:0006306: DNA methylation6.46E-03
84GO:0016117: carotenoid biosynthetic process8.19E-03
85GO:0010051: xylem and phloem pattern formation8.64E-03
86GO:0010087: phloem or xylem histogenesis8.64E-03
87GO:0010118: stomatal movement8.64E-03
88GO:0009416: response to light stimulus8.91E-03
89GO:0009958: positive gravitropism9.10E-03
90GO:0006520: cellular amino acid metabolic process9.10E-03
91GO:0006470: protein dephosphorylation9.37E-03
92GO:0042752: regulation of circadian rhythm9.58E-03
93GO:0009749: response to glucose1.01E-02
94GO:0009851: auxin biosynthetic process1.01E-02
95GO:0032502: developmental process1.11E-02
96GO:0007264: small GTPase mediated signal transduction1.11E-02
97GO:0006464: cellular protein modification process1.21E-02
98GO:0009658: chloroplast organization1.27E-02
99GO:0016579: protein deubiquitination1.31E-02
100GO:0006970: response to osmotic stress1.37E-02
101GO:0010029: regulation of seed germination1.42E-02
102GO:0048366: leaf development1.50E-02
103GO:0015995: chlorophyll biosynthetic process1.54E-02
104GO:0018298: protein-chromophore linkage1.65E-02
105GO:0009407: toxin catabolic process1.77E-02
106GO:0010218: response to far red light1.77E-02
107GO:0006811: ion transport1.77E-02
108GO:0010043: response to zinc ion1.83E-02
109GO:0055114: oxidation-reduction process1.92E-02
110GO:0034599: cellular response to oxidative stress2.02E-02
111GO:0006839: mitochondrial transport2.14E-02
112GO:0006897: endocytosis2.21E-02
113GO:0010114: response to red light2.34E-02
114GO:0009640: photomorphogenesis2.34E-02
115GO:0009644: response to high light intensity2.47E-02
116GO:0008643: carbohydrate transport2.47E-02
117GO:0009636: response to toxic substance2.54E-02
118GO:0006260: DNA replication2.68E-02
119GO:0051603: proteolysis involved in cellular protein catabolic process2.97E-02
120GO:0006417: regulation of translation3.11E-02
121GO:0048367: shoot system development3.33E-02
122GO:0000398: mRNA splicing, via spliceosome4.12E-02
RankGO TermAdjusted P value
1GO:0030946: protein tyrosine phosphatase activity, metal-dependent0.00E+00
2GO:0003826: alpha-ketoacid dehydrogenase activity0.00E+00
3GO:0018738: S-formylglutathione hydrolase activity0.00E+00
4GO:0008170: N-methyltransferase activity0.00E+00
5GO:0004147: dihydrolipoamide branched chain acyltransferase activity0.00E+00
6GO:0043754: dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity0.00E+00
7GO:0009008: DNA-methyltransferase activity0.00E+00
8GO:0045436: lycopene beta cyclase activity0.00E+00
9GO:0004585: ornithine carbamoyltransferase activity0.00E+00
10GO:0004848: ureidoglycolate hydrolase activity2.22E-06
11GO:0004485: methylcrotonoyl-CoA carboxylase activity1.06E-04
12GO:0046906: tetrapyrrole binding1.06E-04
13GO:0033984: indole-3-glycerol-phosphate lyase activity1.06E-04
14GO:0004831: tyrosine-tRNA ligase activity1.06E-04
15GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity2.48E-04
16GO:0004046: aminoacylase activity2.48E-04
17GO:0016743: carboxyl- or carbamoyltransferase activity2.48E-04
18GO:0004075: biotin carboxylase activity4.12E-04
19GO:0001664: G-protein coupled receptor binding4.12E-04
20GO:0004180: carboxypeptidase activity4.12E-04
21GO:0019003: GDP binding4.12E-04
22GO:0031683: G-protein beta/gamma-subunit complex binding4.12E-04
23GO:0000339: RNA cap binding5.92E-04
24GO:0009882: blue light photoreceptor activity5.92E-04
25GO:0005253: anion channel activity7.86E-04
26GO:0004834: tryptophan synthase activity7.86E-04
27GO:0004518: nuclease activity8.94E-04
28GO:0016407: acetyltransferase activity9.92E-04
29GO:0005247: voltage-gated chloride channel activity1.21E-03
30GO:0004144: diacylglycerol O-acyltransferase activity1.45E-03
31GO:0008113: peptide-methionine (S)-S-oxide reductase activity1.45E-03
32GO:0003886: DNA (cytosine-5-)-methyltransferase activity1.45E-03
33GO:0019899: enzyme binding1.70E-03
34GO:0005338: nucleotide-sugar transmembrane transporter activity1.70E-03
35GO:0008168: methyltransferase activity1.91E-03
36GO:0071949: FAD binding2.53E-03
37GO:0001055: RNA polymerase II activity2.84E-03
38GO:0001054: RNA polymerase I activity3.47E-03
39GO:0001056: RNA polymerase III activity3.81E-03
40GO:0042973: glucan endo-1,3-beta-D-glucosidase activity4.52E-03
41GO:0003887: DNA-directed DNA polymerase activity5.26E-03
42GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen6.10E-03
43GO:0004176: ATP-dependent peptidase activity6.46E-03
44GO:0003727: single-stranded RNA binding7.74E-03
45GO:0016491: oxidoreductase activity8.03E-03
46GO:0004812: aminoacyl-tRNA ligase activity8.19E-03
47GO:0008080: N-acetyltransferase activity9.10E-03
48GO:0010181: FMN binding9.58E-03
49GO:0004843: thiol-dependent ubiquitin-specific protease activity1.06E-02
50GO:0008237: metallopeptidase activity1.26E-02
51GO:0003677: DNA binding1.29E-02
52GO:0016597: amino acid binding1.31E-02
53GO:0043531: ADP binding1.39E-02
54GO:0004806: triglyceride lipase activity1.54E-02
55GO:0008236: serine-type peptidase activity1.59E-02
56GO:0016787: hydrolase activity1.67E-02
57GO:0005096: GTPase activator activity1.71E-02
58GO:0004222: metalloendopeptidase activity1.77E-02
59GO:0050897: cobalt ion binding1.83E-02
60GO:0004712: protein serine/threonine/tyrosine kinase activity2.08E-02
61GO:0051539: 4 iron, 4 sulfur cluster binding2.14E-02
62GO:0004364: glutathione transferase activity2.27E-02
63GO:0003924: GTPase activity2.33E-02
64GO:0004185: serine-type carboxypeptidase activity2.34E-02
65GO:0051537: 2 iron, 2 sulfur cluster binding2.47E-02
66GO:0035091: phosphatidylinositol binding2.47E-02
67GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.89E-02
68GO:0022857: transmembrane transporter activity3.56E-02
69GO:0003723: RNA binding4.23E-02
70GO:0019843: rRNA binding4.36E-02
RankGO TermAdjusted P value
1GO:0030427: site of polarized growth0.00E+00
2GO:0005845: mRNA cap binding complex1.06E-04
3GO:0005846: nuclear cap binding complex2.48E-04
4GO:0016605: PML body4.12E-04
5GO:0034707: chloride channel complex1.21E-03
6GO:0030140: trans-Golgi network transport vesicle1.21E-03
7GO:0009840: chloroplastic endopeptidase Clp complex1.45E-03
8GO:0000123: histone acetyltransferase complex1.70E-03
9GO:0009507: chloroplast1.95E-03
10GO:0005811: lipid particle2.24E-03
11GO:0046930: pore complex2.24E-03
12GO:0016604: nuclear body2.84E-03
13GO:0000419: DNA-directed RNA polymerase V complex5.26E-03
14GO:0042651: thylakoid membrane6.05E-03
15GO:0005759: mitochondrial matrix7.46E-03
16GO:0005802: trans-Golgi network1.62E-02
17GO:0019005: SCF ubiquitin ligase complex1.65E-02
18GO:0005622: intracellular1.85E-02
19GO:0005768: endosome1.91E-02
20GO:0005819: spindle2.08E-02
21GO:0005743: mitochondrial inner membrane2.17E-02
22GO:0031966: mitochondrial membrane2.75E-02
23GO:0005834: heterotrimeric G-protein complex3.41E-02
24GO:0005654: nucleoplasm4.28E-02
25GO:0005623: cell4.45E-02
26GO:0005737: cytoplasm4.70E-02
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Gene type



Gene DE type