co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G08560

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
2	GO:0030155: regulation of cell adhesion	0.00E+00
3	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
4	GO:0009715: chalcone biosynthetic process	0.00E+00
5	GO:0061635: regulation of protein complex stability	0.00E+00
6	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
7	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
8	GO:0006114: glycerol biosynthetic process	0.00E+00
9	GO:0006399: tRNA metabolic process	0.00E+00
10	GO:0070125: mitochondrial translational elongation	0.00E+00
11	GO:0015979: photosynthesis	5.44E-11
12	GO:0010027: thylakoid membrane organization	1.26E-08
13	GO:0010206: photosystem II repair	5.33E-08
14	GO:0010207: photosystem II assembly	4.50E-07
15	GO:0018298: protein-chromophore linkage	1.12E-06
16	GO:0009765: photosynthesis, light harvesting	2.77E-05
17	GO:0006546: glycine catabolic process	2.77E-05
18	GO:0009768: photosynthesis, light harvesting in photosystem I	4.93E-05
19	GO:0042549: photosystem II stabilization	6.61E-05
20	GO:0010196: nonphotochemical quenching	1.22E-04
21	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	1.93E-04
22	GO:0000476: maturation of 4.5S rRNA	1.93E-04
23	GO:0000967: rRNA 5'-end processing	1.93E-04
24	GO:0043953: protein transport by the Tat complex	1.93E-04
25	GO:1904966: positive regulation of vitamin E biosynthetic process	1.93E-04
26	GO:0000481: maturation of 5S rRNA	1.93E-04
27	GO:1904964: positive regulation of phytol biosynthetic process	1.93E-04
28	GO:0042371: vitamin K biosynthetic process	1.93E-04
29	GO:0065002: intracellular protein transmembrane transport	1.93E-04
30	GO:0043686: co-translational protein modification	1.93E-04
31	GO:0043007: maintenance of rDNA	1.93E-04
32	GO:1902458: positive regulation of stomatal opening	1.93E-04
33	GO:0034337: RNA folding	1.93E-04
34	GO:0015995: chlorophyll biosynthetic process	3.43E-04
35	GO:0016311: dephosphorylation	3.67E-04
36	GO:0019684: photosynthesis, light reaction	3.85E-04
37	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.33E-04
38	GO:0035304: regulation of protein dephosphorylation	4.33E-04
39	GO:0009629: response to gravity	4.33E-04
40	GO:0019388: galactose catabolic process	4.33E-04
41	GO:0006432: phenylalanyl-tRNA aminoacylation	4.33E-04
42	GO:0018026: peptidyl-lysine monomethylation	4.33E-04
43	GO:0006729: tetrahydrobiopterin biosynthetic process	4.33E-04
44	GO:1903426: regulation of reactive oxygen species biosynthetic process	4.33E-04
45	GO:0034470: ncRNA processing	4.33E-04
46	GO:0010275: NAD(P)H dehydrogenase complex assembly	4.33E-04
47	GO:0045037: protein import into chloroplast stroma	4.41E-04
48	GO:0009637: response to blue light	5.32E-04
49	GO:0048281: inflorescence morphogenesis	7.06E-04
50	GO:0090391: granum assembly	7.06E-04
51	GO:0071492: cellular response to UV-A	7.06E-04
52	GO:0005977: glycogen metabolic process	7.06E-04
53	GO:0010114: response to red light	7.33E-04
54	GO:0061077: chaperone-mediated protein folding	9.35E-04
55	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.01E-03
56	GO:0010148: transpiration	1.01E-03
57	GO:0009590: detection of gravity	1.01E-03
58	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.01E-03
59	GO:2001141: regulation of RNA biosynthetic process	1.01E-03
60	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.01E-03
61	GO:0006020: inositol metabolic process	1.01E-03
62	GO:0071484: cellular response to light intensity	1.01E-03
63	GO:0019464: glycine decarboxylation via glycine cleavage system	1.34E-03
64	GO:0006109: regulation of carbohydrate metabolic process	1.34E-03
65	GO:0015994: chlorophyll metabolic process	1.34E-03
66	GO:0006021: inositol biosynthetic process	1.34E-03
67	GO:0010021: amylopectin biosynthetic process	1.34E-03
68	GO:0015976: carbon utilization	1.34E-03
69	GO:0071486: cellular response to high light intensity	1.34E-03
70	GO:0051781: positive regulation of cell division	1.34E-03
71	GO:0016558: protein import into peroxisome matrix	1.70E-03
72	GO:0006564: L-serine biosynthetic process	1.70E-03
73	GO:0010236: plastoquinone biosynthetic process	1.70E-03
74	GO:0045038: protein import into chloroplast thylakoid membrane	1.70E-03
75	GO:0031365: N-terminal protein amino acid modification	1.70E-03
76	GO:0019252: starch biosynthetic process	1.73E-03
77	GO:0042793: transcription from plastid promoter	2.10E-03
78	GO:0010190: cytochrome b6f complex assembly	2.10E-03
79	GO:0046855: inositol phosphate dephosphorylation	2.10E-03
80	GO:0009793: embryo development ending in seed dormancy	2.44E-03
81	GO:0042372: phylloquinone biosynthetic process	2.52E-03
82	GO:1901259: chloroplast rRNA processing	2.52E-03
83	GO:0009772: photosynthetic electron transport in photosystem II	2.96E-03
84	GO:0070370: cellular heat acclimation	2.96E-03
85	GO:0009769: photosynthesis, light harvesting in photosystem II	2.96E-03
86	GO:0009645: response to low light intensity stimulus	2.96E-03
87	GO:0010103: stomatal complex morphogenesis	2.96E-03
88	GO:0048564: photosystem I assembly	3.43E-03
89	GO:0005978: glycogen biosynthetic process	3.43E-03
90	GO:0009642: response to light intensity	3.43E-03
91	GO:0030091: protein repair	3.43E-03
92	GO:0006875: cellular metal ion homeostasis	3.43E-03
93	GO:0032508: DNA duplex unwinding	3.43E-03
94	GO:2000070: regulation of response to water deprivation	3.43E-03
95	GO:0031540: regulation of anthocyanin biosynthetic process	3.43E-03
96	GO:0000105: histidine biosynthetic process	3.43E-03
97	GO:0009231: riboflavin biosynthetic process	3.43E-03
98	GO:0016559: peroxisome fission	3.43E-03
99	GO:0009813: flavonoid biosynthetic process	3.65E-03
100	GO:0010218: response to far red light	3.83E-03
101	GO:0071482: cellular response to light stimulus	3.93E-03
102	GO:0015996: chlorophyll catabolic process	3.93E-03
103	GO:0007186: G-protein coupled receptor signaling pathway	3.93E-03
104	GO:0001558: regulation of cell growth	3.93E-03
105	GO:0032544: plastid translation	3.93E-03
106	GO:0017004: cytochrome complex assembly	3.93E-03
107	GO:0010205: photoinhibition	4.99E-03
108	GO:0006779: porphyrin-containing compound biosynthetic process	4.99E-03
109	GO:0006412: translation	5.26E-03
110	GO:0006782: protoporphyrinogen IX biosynthetic process	5.55E-03
111	GO:0009658: chloroplast organization	5.73E-03
112	GO:0009644: response to high light intensity	6.12E-03
113	GO:0009773: photosynthetic electron transport in photosystem I	6.13E-03
114	GO:0009089: lysine biosynthetic process via diaminopimelate	6.13E-03
115	GO:0009073: aromatic amino acid family biosynthetic process	6.13E-03
116	GO:0043085: positive regulation of catalytic activity	6.13E-03
117	GO:0006352: DNA-templated transcription, initiation	6.13E-03
118	GO:0006790: sulfur compound metabolic process	6.73E-03
119	GO:0005983: starch catabolic process	6.73E-03
120	GO:0006006: glucose metabolic process	7.36E-03
121	GO:0006302: double-strand break repair	8.01E-03
122	GO:0010020: chloroplast fission	8.01E-03
123	GO:0010030: positive regulation of seed germination	8.67E-03
124	GO:0046854: phosphatidylinositol phosphorylation	8.67E-03
125	GO:0000162: tryptophan biosynthetic process	9.35E-03
126	GO:0009944: polarity specification of adaxial/abaxial axis	1.01E-02
127	GO:0051302: regulation of cell division	1.08E-02
128	GO:0009269: response to desiccation	1.15E-02
129	GO:0051321: meiotic cell cycle	1.15E-02
130	GO:0048511: rhythmic process	1.15E-02
131	GO:0071369: cellular response to ethylene stimulus	1.31E-02
132	GO:0001944: vasculature development	1.31E-02
133	GO:0009561: megagametogenesis	1.39E-02
134	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.47E-02
135	GO:0042631: cellular response to water deprivation	1.55E-02
136	GO:0000413: protein peptidyl-prolyl isomerization	1.55E-02
137	GO:0006662: glycerol ether metabolic process	1.63E-02
138	GO:0010182: sugar mediated signaling pathway	1.63E-02
139	GO:0042752: regulation of circadian rhythm	1.72E-02
140	GO:0071554: cell wall organization or biogenesis	1.90E-02
141	GO:0002229: defense response to oomycetes	1.90E-02
142	GO:0006635: fatty acid beta-oxidation	1.90E-02
143	GO:0006470: protein dephosphorylation	2.16E-02
144	GO:0009567: double fertilization forming a zygote and endosperm	2.18E-02
145	GO:0009735: response to cytokinin	2.28E-02
146	GO:0009416: response to light stimulus	2.55E-02
147	GO:0009627: systemic acquired resistance	2.67E-02
148	GO:0009409: response to cold	2.92E-02
149	GO:0042254: ribosome biogenesis	2.98E-02
150	GO:0009817: defense response to fungus, incompatible interaction	2.98E-02
151	GO:0006499: N-terminal protein myristoylation	3.20E-02
152	GO:0006810: transport	3.29E-02
153	GO:0009867: jasmonic acid mediated signaling pathway	3.53E-02
154	GO:0034599: cellular response to oxidative stress	3.64E-02
155	GO:0006631: fatty acid metabolic process	3.99E-02
156	GO:0009926: auxin polar transport	4.23E-02
157	GO:0009965: leaf morphogenesis	4.59E-02
158	GO:0009664: plant-type cell wall organization	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
2	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
3	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
4	GO:0004561: alpha-N-acetylglucosaminidase activity	0.00E+00
5	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
6	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
7	GO:0042623: ATPase activity, coupled	0.00E+00
8	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
9	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
10	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.45E-07
11	GO:0016168: chlorophyll binding	6.29E-07
12	GO:0005528: FK506 binding	9.83E-07
13	GO:0019843: rRNA binding	3.55E-05
14	GO:0031409: pigment binding	3.55E-05
15	GO:0050308: sugar-phosphatase activity	1.93E-04
16	GO:0010242: oxygen evolving activity	1.93E-04
17	GO:0042586: peptide deformylase activity	1.93E-04
18	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	1.93E-04
19	GO:0019203: carbohydrate phosphatase activity	1.93E-04
20	GO:0015088: copper uptake transmembrane transporter activity	1.93E-04
21	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	1.93E-04
22	GO:0052832: inositol monophosphate 3-phosphatase activity	4.33E-04
23	GO:0008934: inositol monophosphate 1-phosphatase activity	4.33E-04
24	GO:0052833: inositol monophosphate 4-phosphatase activity	4.33E-04
25	GO:0004826: phenylalanine-tRNA ligase activity	4.33E-04
26	GO:0004614: phosphoglucomutase activity	4.33E-04
27	GO:0019156: isoamylase activity	4.33E-04
28	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	4.33E-04
29	GO:0047746: chlorophyllase activity	4.33E-04
30	GO:0009977: proton motive force dependent protein transmembrane transporter activity	4.33E-04
31	GO:0004617: phosphoglycerate dehydrogenase activity	4.33E-04
32	GO:0004047: aminomethyltransferase activity	4.33E-04
33	GO:0031072: heat shock protein binding	5.01E-04
34	GO:0003993: acid phosphatase activity	5.64E-04
35	GO:0003913: DNA photolyase activity	7.06E-04
36	GO:0005504: fatty acid binding	7.06E-04
37	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.01E-03
38	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.01E-03
39	GO:0016851: magnesium chelatase activity	1.01E-03
40	GO:0022891: substrate-specific transmembrane transporter activity	1.11E-03
41	GO:0016987: sigma factor activity	1.34E-03
42	GO:0045430: chalcone isomerase activity	1.34E-03
43	GO:0019199: transmembrane receptor protein kinase activity	1.34E-03
44	GO:0043495: protein anchor	1.34E-03
45	GO:0042277: peptide binding	1.34E-03
46	GO:0004659: prenyltransferase activity	1.34E-03
47	GO:0016279: protein-lysine N-methyltransferase activity	1.34E-03
48	GO:0001053: plastid sigma factor activity	1.34E-03
49	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.34E-03
50	GO:0004556: alpha-amylase activity	2.10E-03
51	GO:2001070: starch binding	2.10E-03
52	GO:0008483: transaminase activity	2.38E-03
53	GO:0008195: phosphatidate phosphatase activity	2.52E-03
54	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.52E-03
55	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.52E-03
56	GO:0009881: photoreceptor activity	2.96E-03
57	GO:0019899: enzyme binding	2.96E-03
58	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	4.44E-03
59	GO:0005381: iron ion transmembrane transporter activity	4.99E-03
60	GO:0008047: enzyme activator activity	5.55E-03
61	GO:0000287: magnesium ion binding	5.60E-03
62	GO:0003735: structural constituent of ribosome	5.66E-03
63	GO:0000049: tRNA binding	6.73E-03
64	GO:0004565: beta-galactosidase activity	7.36E-03
65	GO:0004089: carbonate dehydratase activity	7.36E-03
66	GO:0008266: poly(U) RNA binding	8.01E-03
67	GO:0004857: enzyme inhibitor activity	1.01E-02
68	GO:0004722: protein serine/threonine phosphatase activity	1.07E-02
69	GO:0043424: protein histidine kinase binding	1.08E-02
70	GO:0051082: unfolded protein binding	1.09E-02
71	GO:0008408: 3'-5' exonuclease activity	1.15E-02
72	GO:0003756: protein disulfide isomerase activity	1.39E-02
73	GO:0047134: protein-disulfide reductase activity	1.47E-02
74	GO:0004791: thioredoxin-disulfide reductase activity	1.72E-02
75	GO:0048038: quinone binding	1.90E-02
76	GO:0008017: microtubule binding	1.98E-02
77	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.08E-02
78	GO:0016413: O-acetyltransferase activity	2.37E-02
79	GO:0016597: amino acid binding	2.37E-02
80	GO:0042802: identical protein binding	2.40E-02
81	GO:0004721: phosphoprotein phosphatase activity	2.77E-02
82	GO:0008236: serine-type peptidase activity	2.88E-02
83	GO:0016788: hydrolase activity, acting on ester bonds	2.98E-02
84	GO:0030145: manganese ion binding	3.31E-02
85	GO:0003746: translation elongation factor activity	3.53E-02
86	GO:0052689: carboxylic ester hydrolase activity	4.00E-02
87	GO:0005515: protein binding	4.78E-02
88	GO:0051287: NAD binding	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009349: riboflavin synthase complex	0.00E+00
3	GO:0043235: receptor complex	0.00E+00
4	GO:0009507: chloroplast	9.46E-55
5	GO:0009535: chloroplast thylakoid membrane	8.70E-36
6	GO:0009570: chloroplast stroma	9.62E-27
7	GO:0009534: chloroplast thylakoid	4.10E-26
8	GO:0009543: chloroplast thylakoid lumen	2.12E-20
9	GO:0009579: thylakoid	2.93E-20
10	GO:0009941: chloroplast envelope	4.08E-17
11	GO:0031977: thylakoid lumen	1.51E-12
12	GO:0030095: chloroplast photosystem II	4.50E-07
13	GO:0010287: plastoglobule	1.95E-06
14	GO:0009538: photosystem I reaction center	2.63E-06
15	GO:0009654: photosystem II oxygen evolving complex	4.93E-05
16	GO:0009522: photosystem I	1.35E-04
17	GO:0009523: photosystem II	1.50E-04
18	GO:0019898: extrinsic component of membrane	1.50E-04
19	GO:0000791: euchromatin	1.93E-04
20	GO:0009783: photosystem II antenna complex	1.93E-04
21	GO:0009515: granal stacked thylakoid	1.93E-04
22	GO:0031361: integral component of thylakoid membrane	1.93E-04
23	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.36E-04
24	GO:0005840: ribosome	4.27E-04
25	GO:0030870: Mre11 complex	4.33E-04
26	GO:0000427: plastid-encoded plastid RNA polymerase complex	4.33E-04
27	GO:0009508: plastid chromosome	5.01E-04
28	GO:0030076: light-harvesting complex	6.32E-04
29	GO:0009528: plastid inner membrane	7.06E-04
30	GO:0010007: magnesium chelatase complex	7.06E-04
31	GO:0033281: TAT protein transport complex	7.06E-04
32	GO:0042646: plastid nucleoid	1.01E-03
33	GO:0005960: glycine cleavage complex	1.01E-03
34	GO:0009517: PSII associated light-harvesting complex II	1.34E-03
35	GO:0031897: Tic complex	1.34E-03
36	GO:0009527: plastid outer membrane	1.34E-03
37	GO:0000795: synaptonemal complex	1.70E-03
38	GO:0009295: nucleoid	2.38E-03
39	GO:0010319: stromule	2.38E-03
40	GO:0009533: chloroplast stromal thylakoid	2.96E-03
41	GO:0009707: chloroplast outer membrane	3.47E-03
42	GO:0042644: chloroplast nucleoid	4.44E-03
43	GO:0055028: cortical microtubule	5.55E-03
44	GO:0048046: apoplast	6.51E-03
45	GO:0032040: small-subunit processome	6.73E-03
46	GO:0042651: thylakoid membrane	1.08E-02
47	GO:0009706: chloroplast inner membrane	1.09E-02
48	GO:0015935: small ribosomal subunit	1.15E-02
49	GO:0009532: plastid stroma	1.15E-02
50	GO:0005759: mitochondrial matrix	1.72E-02
51	GO:0000785: chromatin	1.99E-02
52	GO:0005778: peroxisomal membrane	2.27E-02
53	GO:0022626: cytosolic ribosome	2.42E-02
54	GO:0009536: plastid	2.52E-02
55	GO:0015934: large ribosomal subunit	3.31E-02
56	GO:0031969: chloroplast membrane	3.62E-02