Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G07440

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0018316: peptide cross-linking via L-cystine0.00E+00
2GO:0015882: L-ascorbic acid transport0.00E+00
3GO:0008298: intracellular mRNA localization0.00E+00
4GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
5GO:0051246: regulation of protein metabolic process0.00E+00
6GO:1901401: regulation of tetrapyrrole metabolic process0.00E+00
7GO:0019685: photosynthesis, dark reaction0.00E+00
8GO:0015678: high-affinity copper ion transport0.00E+00
9GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway0.00E+00
10GO:1901918: negative regulation of exoribonuclease activity0.00E+00
11GO:0098586: cellular response to virus0.00E+00
12GO:0017009: protein-phycocyanobilin linkage0.00E+00
13GO:0042821: pyridoxal biosynthetic process0.00E+00
14GO:0042820: vitamin B6 catabolic process0.00E+00
15GO:0048564: photosystem I assembly2.69E-07
16GO:0016123: xanthophyll biosynthetic process2.40E-06
17GO:0009658: chloroplast organization7.40E-06
18GO:0000256: allantoin catabolic process7.99E-06
19GO:0080005: photosystem stoichiometry adjustment7.99E-06
20GO:0015995: chlorophyll biosynthetic process1.58E-05
21GO:0015979: photosynthesis2.47E-05
22GO:0009657: plastid organization2.64E-05
23GO:0010136: ureide catabolic process2.76E-05
24GO:0055114: oxidation-reduction process4.38E-05
25GO:2001141: regulation of RNA biosynthetic process5.99E-05
26GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly5.99E-05
27GO:0006145: purine nucleobase catabolic process5.99E-05
28GO:0009902: chloroplast relocation1.05E-04
29GO:0016120: carotene biosynthetic process1.63E-04
30GO:0045038: protein import into chloroplast thylakoid membrane1.63E-04
31GO:0018298: protein-chromophore linkage2.32E-04
32GO:0071470: cellular response to osmotic stress3.12E-04
33GO:0033388: putrescine biosynthetic process from arginine4.23E-04
34GO:0010322: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.23E-04
35GO:1904964: positive regulation of phytol biosynthetic process4.23E-04
36GO:0071277: cellular response to calcium ion4.23E-04
37GO:0042371: vitamin K biosynthetic process4.23E-04
38GO:0071454: cellular response to anoxia4.23E-04
39GO:0071461: cellular response to redox state4.23E-04
40GO:0006436: tryptophanyl-tRNA aminoacylation4.23E-04
41GO:1902458: positive regulation of stomatal opening4.23E-04
42GO:0010028: xanthophyll cycle4.23E-04
43GO:0006419: alanyl-tRNA aminoacylation4.23E-04
44GO:0009443: pyridoxal 5'-phosphate salvage4.23E-04
45GO:0010362: negative regulation of anion channel activity by blue light4.23E-04
46GO:0031426: polycistronic mRNA processing4.23E-04
47GO:0046900: tetrahydrofolylpolyglutamate metabolic process4.23E-04
48GO:1904966: positive regulation of vitamin E biosynthetic process4.23E-04
49GO:0009644: response to high light intensity5.79E-04
50GO:0071482: cellular response to light stimulus6.14E-04
51GO:0009793: embryo development ending in seed dormancy6.97E-04
52GO:0000373: Group II intron splicing7.36E-04
53GO:0006364: rRNA processing8.11E-04
54GO:0009638: phototropism8.68E-04
55GO:0034755: iron ion transmembrane transport9.16E-04
56GO:0006435: threonyl-tRNA aminoacylation9.16E-04
57GO:0009446: putrescine biosynthetic process9.16E-04
58GO:0080183: response to photooxidative stress9.16E-04
59GO:1903426: regulation of reactive oxygen species biosynthetic process9.16E-04
60GO:0080153: negative regulation of reductive pentose-phosphate cycle9.16E-04
61GO:0046741: transport of virus in host, tissue to tissue9.16E-04
62GO:0042853: L-alanine catabolic process9.16E-04
63GO:0048314: embryo sac morphogenesis9.16E-04
64GO:0019752: carboxylic acid metabolic process9.16E-04
65GO:1902326: positive regulation of chlorophyll biosynthetic process9.16E-04
66GO:0030187: melatonin biosynthetic process9.16E-04
67GO:0006352: DNA-templated transcription, initiation1.16E-03
68GO:0009773: photosynthetic electron transport in photosystem I1.16E-03
69GO:0006013: mannose metabolic process1.49E-03
70GO:0002230: positive regulation of defense response to virus by host1.49E-03
71GO:1901672: positive regulation of systemic acquired resistance1.49E-03
72GO:0005977: glycogen metabolic process1.49E-03
73GO:0090391: granum assembly1.49E-03
74GO:0009405: pathogenesis1.49E-03
75GO:0009767: photosynthetic electron transport chain1.51E-03
76GO:0019253: reductive pentose-phosphate cycle1.70E-03
77GO:0010207: photosystem II assembly1.70E-03
78GO:0050482: arachidonic acid secretion2.15E-03
79GO:0043572: plastid fission2.15E-03
80GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center2.15E-03
81GO:0009067: aspartate family amino acid biosynthetic process2.15E-03
82GO:0071484: cellular response to light intensity2.15E-03
83GO:0010239: chloroplast mRNA processing2.15E-03
84GO:0009052: pentose-phosphate shunt, non-oxidative branch2.15E-03
85GO:0090307: mitotic spindle assembly2.15E-03
86GO:0006809: nitric oxide biosynthetic process2.15E-03
87GO:0051016: barbed-end actin filament capping2.15E-03
88GO:0046739: transport of virus in multicellular host2.15E-03
89GO:0009853: photorespiration2.24E-03
90GO:0007017: microtubule-based process2.60E-03
91GO:0010021: amylopectin biosynthetic process2.89E-03
92GO:0042274: ribosomal small subunit biogenesis2.89E-03
93GO:0031935: regulation of chromatin silencing2.89E-03
94GO:0009765: photosynthesis, light harvesting2.89E-03
95GO:0031122: cytoplasmic microtubule organization2.89E-03
96GO:0006021: inositol biosynthetic process2.89E-03
97GO:0010117: photoprotection3.71E-03
98GO:0009306: protein secretion3.71E-03
99GO:0035434: copper ion transmembrane transport3.71E-03
100GO:0006282: regulation of DNA repair3.71E-03
101GO:0016558: protein import into peroxisome matrix3.71E-03
102GO:0034052: positive regulation of plant-type hypersensitive response3.71E-03
103GO:0006810: transport4.18E-03
104GO:0008033: tRNA processing4.35E-03
105GO:0009643: photosynthetic acclimation4.59E-03
106GO:0000741: karyogamy4.59E-03
107GO:0046855: inositol phosphate dephosphorylation4.59E-03
108GO:0042549: photosystem II stabilization4.59E-03
109GO:0010190: cytochrome b6f complex assembly4.59E-03
110GO:0009117: nucleotide metabolic process4.59E-03
111GO:0009791: post-embryonic development5.42E-03
112GO:0010189: vitamin E biosynthetic process5.53E-03
113GO:0009088: threonine biosynthetic process5.53E-03
114GO:0010193: response to ozone5.80E-03
115GO:0019761: glucosinolate biosynthetic process6.20E-03
116GO:0006400: tRNA modification6.54E-03
117GO:0006401: RNA catabolic process6.54E-03
118GO:0048528: post-embryonic root development6.54E-03
119GO:0009772: photosynthetic electron transport in photosystem II6.54E-03
120GO:1900056: negative regulation of leaf senescence6.54E-03
121GO:0009645: response to low light intensity stimulus6.54E-03
122GO:0009704: de-etiolation7.60E-03
123GO:0042255: ribosome assembly7.60E-03
124GO:0006353: DNA-templated transcription, termination7.60E-03
125GO:2000070: regulation of response to water deprivation7.60E-03
126GO:0006644: phospholipid metabolic process7.60E-03
127GO:0006402: mRNA catabolic process7.60E-03
128GO:0009787: regulation of abscisic acid-activated signaling pathway7.60E-03
129GO:0009642: response to light intensity7.60E-03
130GO:0032544: plastid translation8.73E-03
131GO:0009816: defense response to bacterium, incompatible interaction8.89E-03
132GO:0048507: meristem development9.92E-03
133GO:0098656: anion transmembrane transport9.92E-03
134GO:0009821: alkaloid biosynthetic process9.92E-03
135GO:0090305: nucleic acid phosphodiester bond hydrolysis9.92E-03
136GO:0006098: pentose-phosphate shunt9.92E-03
137GO:0090333: regulation of stomatal closure9.92E-03
138GO:0031425: chloroplast RNA processing1.12E-02
139GO:1900426: positive regulation of defense response to bacterium1.12E-02
140GO:0009098: leucine biosynthetic process1.12E-02
141GO:0010380: regulation of chlorophyll biosynthetic process1.12E-02
142GO:0045036: protein targeting to chloroplast1.24E-02
143GO:0006949: syncytium formation1.24E-02
144GO:0006259: DNA metabolic process1.24E-02
145GO:0007568: aging1.27E-02
146GO:0006879: cellular iron ion homeostasis1.38E-02
147GO:0006415: translational termination1.38E-02
148GO:0006265: DNA topological change1.38E-02
149GO:0009089: lysine biosynthetic process via diaminopimelate1.38E-02
150GO:0006790: sulfur compound metabolic process1.52E-02
151GO:0006006: glucose metabolic process1.66E-02
152GO:0006807: nitrogen compound metabolic process1.66E-02
153GO:0009725: response to hormone1.66E-02
154GO:0006094: gluconeogenesis1.66E-02
155GO:0005986: sucrose biosynthetic process1.66E-02
156GO:0009744: response to sucrose1.81E-02
157GO:0034605: cellular response to heat1.81E-02
158GO:0006541: glutamine metabolic process1.81E-02
159GO:0010020: chloroplast fission1.81E-02
160GO:0046854: phosphatidylinositol phosphorylation1.96E-02
161GO:0019853: L-ascorbic acid biosynthetic process1.96E-02
162GO:0006863: purine nucleobase transport2.12E-02
163GO:0006833: water transport2.12E-02
164GO:0080147: root hair cell development2.29E-02
165GO:0009768: photosynthesis, light harvesting in photosystem I2.45E-02
166GO:0006825: copper ion transport2.45E-02
167GO:0051302: regulation of cell division2.45E-02
168GO:0006418: tRNA aminoacylation for protein translation2.45E-02
169GO:0009409: response to cold2.53E-02
170GO:0051321: meiotic cell cycle2.62E-02
171GO:0080092: regulation of pollen tube growth2.80E-02
172GO:0016226: iron-sulfur cluster assembly2.80E-02
173GO:0006096: glycolytic process2.88E-02
174GO:0009625: response to insect2.98E-02
175GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.98E-02
176GO:0009735: response to cytokinin3.19E-02
177GO:0080167: response to karrikin3.25E-02
178GO:0016117: carotenoid biosynthetic process3.34E-02
179GO:0070417: cellular response to cold3.34E-02
180GO:0009553: embryo sac development3.37E-02
181GO:0034220: ion transmembrane transport3.54E-02
182GO:0010118: stomatal movement3.54E-02
183GO:0006606: protein import into nucleus3.54E-02
184GO:0006396: RNA processing3.57E-02
185GO:0009416: response to light stimulus3.63E-02
186GO:0010197: polar nucleus fusion3.73E-02
187GO:0048868: pollen tube development3.73E-02
188GO:0071472: cellular response to salt stress3.73E-02
189GO:0015986: ATP synthesis coupled proton transport3.93E-02
190GO:0007059: chromosome segregation3.93E-02
191GO:0019252: starch biosynthetic process4.13E-02
192GO:0008654: phospholipid biosynthetic process4.13E-02
193GO:0006635: fatty acid beta-oxidation4.33E-02
194GO:0000302: response to reactive oxygen species4.33E-02
195GO:0032502: developmental process4.54E-02
196GO:0031047: gene silencing by RNA4.54E-02
197GO:0016032: viral process4.54E-02
198GO:0009058: biosynthetic process4.56E-02
199GO:0009828: plant-type cell wall loosening4.96E-02
200GO:0032259: methylation4.97E-02
RankGO TermAdjusted P value
1GO:0045435: lycopene epsilon cyclase activity0.00E+00
2GO:0015229: L-ascorbic acid transporter activity0.00E+00
3GO:0004760: serine-pyruvate transaminase activity0.00E+00
4GO:0042623: ATPase activity, coupled0.00E+00
5GO:0003858: 3-hydroxybutyrate dehydrogenase activity0.00E+00
6GO:0050126: N-carbamoylputrescine amidase activity0.00E+00
7GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity0.00E+00
8GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
9GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
10GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
11GO:0050281: serine-glyoxylate transaminase activity0.00E+00
12GO:0004059: aralkylamine N-acetyltransferase activity0.00E+00
13GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
14GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
15GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
16GO:0010276: phytol kinase activity0.00E+00
17GO:0016851: magnesium chelatase activity5.99E-05
18GO:0048038: quinone binding7.39E-05
19GO:0001053: plastid sigma factor activity1.05E-04
20GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.05E-04
21GO:0008453: alanine-glyoxylate transaminase activity1.05E-04
22GO:0016987: sigma factor activity1.05E-04
23GO:0016491: oxidoreductase activity3.78E-04
24GO:0008242: omega peptidase activity4.23E-04
25GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.23E-04
26GO:0004830: tryptophan-tRNA ligase activity4.23E-04
27GO:0030941: chloroplast targeting sequence binding4.23E-04
28GO:0004654: polyribonucleotide nucleotidyltransferase activity4.23E-04
29GO:0010347: L-galactose-1-phosphate phosphatase activity4.23E-04
30GO:0016784: 3-mercaptopyruvate sulfurtransferase activity4.23E-04
31GO:0035671: enone reductase activity4.23E-04
32GO:0004451: isocitrate lyase activity4.23E-04
33GO:0047958: glycine:2-oxoglutarate aminotransferase activity4.23E-04
34GO:0004813: alanine-tRNA ligase activity4.23E-04
35GO:0010177: 2-(2'-methylthio)ethylmalate synthase activity4.23E-04
36GO:0003862: 3-isopropylmalate dehydrogenase activity9.16E-04
37GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity9.16E-04
38GO:0009977: proton motive force dependent protein transmembrane transporter activity9.16E-04
39GO:0052832: inositol monophosphate 3-phosphatase activity9.16E-04
40GO:0004829: threonine-tRNA ligase activity9.16E-04
41GO:0019172: glyoxalase III activity9.16E-04
42GO:0019156: isoamylase activity9.16E-04
43GO:0008934: inositol monophosphate 1-phosphatase activity9.16E-04
44GO:0052833: inositol monophosphate 4-phosphatase activity9.16E-04
45GO:0034722: gamma-glutamyl-peptidase activity9.16E-04
46GO:0005089: Rho guanyl-nucleotide exchange factor activity1.16E-03
47GO:0016168: chlorophyll binding1.27E-03
48GO:0004751: ribose-5-phosphate isomerase activity1.49E-03
49GO:0030267: glyoxylate reductase (NADP) activity1.49E-03
50GO:0070402: NADPH binding1.49E-03
51GO:0015089: high-affinity copper ion transmembrane transporter activity1.49E-03
52GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.49E-03
53GO:0004180: carboxypeptidase activity1.49E-03
54GO:0010277: chlorophyllide a oxygenase [overall] activity1.49E-03
55GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.49E-03
56GO:0050307: sucrose-phosphate phosphatase activity1.49E-03
57GO:0032947: protein complex scaffold1.49E-03
58GO:0004848: ureidoglycolate hydrolase activity1.49E-03
59GO:0004148: dihydrolipoyl dehydrogenase activity1.49E-03
60GO:0009882: blue light photoreceptor activity2.15E-03
61GO:0004072: aspartate kinase activity2.15E-03
62GO:0035529: NADH pyrophosphatase activity2.15E-03
63GO:0048027: mRNA 5'-UTR binding2.15E-03
64GO:0004792: thiosulfate sulfurtransferase activity2.15E-03
65GO:0016149: translation release factor activity, codon specific2.15E-03
66GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity2.15E-03
67GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor2.89E-03
68GO:0043495: protein anchor2.89E-03
69GO:0051861: glycolipid binding2.89E-03
70GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds2.89E-03
71GO:0043015: gamma-tubulin binding2.89E-03
72GO:0051537: 2 iron, 2 sulfur cluster binding3.42E-03
73GO:0022891: substrate-specific transmembrane transporter activity3.42E-03
74GO:0003727: single-stranded RNA binding3.71E-03
75GO:0051011: microtubule minus-end binding3.71E-03
76GO:0004623: phospholipase A2 activity3.71E-03
77GO:0051287: NAD binding3.95E-03
78GO:0004605: phosphatidate cytidylyltransferase activity4.59E-03
79GO:0004332: fructose-bisphosphate aldolase activity4.59E-03
80GO:0004556: alpha-amylase activity4.59E-03
81GO:0004462: lactoylglutathione lyase activity4.59E-03
82GO:0016462: pyrophosphatase activity4.59E-03
83GO:0000293: ferric-chelate reductase activity4.59E-03
84GO:0008080: N-acetyltransferase activity4.69E-03
85GO:0010181: FMN binding5.05E-03
86GO:0004559: alpha-mannosidase activity5.53E-03
87GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity5.53E-03
88GO:0015631: tubulin binding5.53E-03
89GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.53E-03
90GO:0019899: enzyme binding6.54E-03
91GO:0004033: aldo-keto reductase (NADP) activity7.60E-03
92GO:0016597: amino acid binding7.94E-03
93GO:0005375: copper ion transmembrane transporter activity8.73E-03
94GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity8.73E-03
95GO:0019843: rRNA binding9.48E-03
96GO:0003747: translation release factor activity9.92E-03
97GO:0016844: strictosidine synthase activity1.12E-02
98GO:0045309: protein phosphorylated amino acid binding1.12E-02
99GO:0005381: iron ion transmembrane transporter activity1.12E-02
100GO:0019904: protein domain specific binding1.38E-02
101GO:0000049: tRNA binding1.52E-02
102GO:0005315: inorganic phosphate transmembrane transporter activity1.66E-02
103GO:0000155: phosphorelay sensor kinase activity1.66E-02
104GO:0000175: 3'-5'-exoribonuclease activity1.66E-02
105GO:0008081: phosphoric diester hydrolase activity1.66E-02
106GO:0009055: electron carrier activity1.73E-02
107GO:0004364: glutathione transferase activity1.73E-02
108GO:0042802: identical protein binding1.94E-02
109GO:0031409: pigment binding2.12E-02
110GO:0051536: iron-sulfur cluster binding2.29E-02
111GO:0005528: FK506 binding2.29E-02
112GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.44E-02
113GO:0005345: purine nucleobase transmembrane transporter activity2.45E-02
114GO:0004176: ATP-dependent peptidase activity2.62E-02
115GO:0016887: ATPase activity2.98E-02
116GO:0008514: organic anion transmembrane transporter activity3.16E-02
117GO:0004812: aminoacyl-tRNA ligase activity3.34E-02
118GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.73E-02
119GO:0005506: iron ion binding3.77E-02
120GO:0016853: isomerase activity3.93E-02
121GO:0004872: receptor activity4.13E-02
122GO:0016762: xyloglucan:xyloglucosyl transferase activity4.33E-02
123GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen4.45E-02
124GO:0003723: RNA binding4.49E-02
125GO:0004518: nuclease activity4.54E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast2.04E-53
2GO:0009535: chloroplast thylakoid membrane4.12E-29
3GO:0009570: chloroplast stroma6.03E-14
4GO:0009941: chloroplast envelope2.97E-12
5GO:0009534: chloroplast thylakoid6.75E-10
6GO:0009579: thylakoid5.93E-08
7GO:0009543: chloroplast thylakoid lumen5.67E-06
8GO:0033281: TAT protein transport complex2.76E-05
9GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.62E-05
10GO:0030286: dynein complex1.05E-04
11GO:0009706: chloroplast inner membrane2.51E-04
12GO:0009654: photosystem II oxygen evolving complex2.60E-04
13GO:0042651: thylakoid membrane2.60E-04
14GO:0009782: photosystem I antenna complex4.23E-04
15GO:0031977: thylakoid lumen4.52E-04
16GO:0009523: photosystem II6.83E-04
17GO:0042644: chloroplast nucleoid7.36E-04
18GO:0080085: signal recognition particle, chloroplast targeting9.16E-04
19GO:0008274: gamma-tubulin ring complex9.16E-04
20GO:0008290: F-actin capping protein complex9.16E-04
21GO:0010007: magnesium chelatase complex1.49E-03
22GO:0009707: chloroplast outer membrane1.65E-03
23GO:0030095: chloroplast photosystem II1.70E-03
24GO:0010287: plastoglobule1.79E-03
25GO:0000923: equatorial microtubule organizing center2.15E-03
26GO:0031969: chloroplast membrane2.17E-03
27GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)2.89E-03
28GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)4.59E-03
29GO:0019898: extrinsic component of membrane5.42E-03
30GO:0031359: integral component of chloroplast outer membrane6.54E-03
31GO:0005778: peroxisomal membrane7.48E-03
32GO:0010319: stromule7.48E-03
33GO:0009295: nucleoid7.48E-03
34GO:0009536: plastid7.71E-03
35GO:0005786: signal recognition particle, endoplasmic reticulum targeting8.73E-03
36GO:0009539: photosystem II reaction center8.73E-03
37GO:0000922: spindle pole9.92E-03
38GO:0016324: apical plasma membrane1.24E-02
39GO:0048471: perinuclear region of cytoplasm1.38E-02
40GO:0009508: plastid chromosome1.66E-02
41GO:0030076: light-harvesting complex1.96E-02
42GO:0043234: protein complex2.12E-02
43GO:0005875: microtubule associated complex2.12E-02
44GO:0009505: plant-type cell wall2.19E-02
45GO:0031966: mitochondrial membrane2.27E-02
46GO:0045271: respiratory chain complex I2.45E-02
47GO:0005747: mitochondrial respiratory chain complex I2.98E-02
48GO:0005623: cell4.45E-02
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Gene type



Gene DE type