co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G07010

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009661: chromoplast organization	0.00E+00
2	GO:0010243: response to organonitrogen compound	0.00E+00
3	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
4	GO:0090470: shoot organ boundary specification	0.00E+00
5	GO:0046677: response to antibiotic	0.00E+00
6	GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)	0.00E+00
7	GO:0071483: cellular response to blue light	2.36E-08
8	GO:0042754: negative regulation of circadian rhythm	4.96E-07
9	GO:2001141: regulation of RNA biosynthetic process	4.47E-06
10	GO:0009902: chloroplast relocation	8.50E-06
11	GO:0010236: plastoquinone biosynthetic process	1.41E-05
12	GO:0048574: long-day photoperiodism, flowering	6.86E-05
13	GO:0010100: negative regulation of photomorphogenesis	6.86E-05
14	GO:0015995: chlorophyll biosynthetic process	9.15E-05
15	GO:0071461: cellular response to redox state	9.69E-05
16	GO:0010362: negative regulation of anion channel activity by blue light	9.69E-05
17	GO:0046467: membrane lipid biosynthetic process	9.69E-05
18	GO:0031426: polycistronic mRNA processing	9.69E-05
19	GO:0007623: circadian rhythm	1.17E-04
20	GO:0006352: DNA-templated transcription, initiation	1.44E-04
21	GO:0010207: photosystem II assembly	2.19E-04
22	GO:0050992: dimethylallyl diphosphate biosynthetic process	2.28E-04
23	GO:1904143: positive regulation of carotenoid biosynthetic process	2.28E-04
24	GO:0042548: regulation of photosynthesis, light reaction	2.28E-04
25	GO:0006898: receptor-mediated endocytosis	2.28E-04
26	GO:0043496: regulation of protein homodimerization activity	2.28E-04
27	GO:0080005: photosystem stoichiometry adjustment	2.28E-04
28	GO:0000256: allantoin catabolic process	2.28E-04
29	GO:0009658: chloroplast organization	2.46E-04
30	GO:0008299: isoprenoid biosynthetic process	3.41E-04
31	GO:0019419: sulfate reduction	3.80E-04
32	GO:0010136: ureide catabolic process	3.80E-04
33	GO:0045454: cell redox homeostasis	4.62E-04
34	GO:0010371: regulation of gibberellin biosynthetic process	5.46E-04
35	GO:0071484: cellular response to light intensity	5.46E-04
36	GO:0010239: chloroplast mRNA processing	5.46E-04
37	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	5.46E-04
38	GO:0006145: purine nucleobase catabolic process	5.46E-04
39	GO:0010021: amylopectin biosynthetic process	7.26E-04
40	GO:0071585: detoxification of cadmium ion	7.26E-04
41	GO:0009904: chloroplast accumulation movement	9.17E-04
42	GO:0016120: carotene biosynthetic process	9.17E-04
43	GO:0010117: photoprotection	9.17E-04
44	GO:0009643: photosynthetic acclimation	1.12E-03
45	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.12E-03
46	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.12E-03
47	GO:0010190: cytochrome b6f complex assembly	1.12E-03
48	GO:0009903: chloroplast avoidance movement	1.34E-03
49	GO:0010189: vitamin E biosynthetic process	1.34E-03
50	GO:0009648: photoperiodism	1.34E-03
51	GO:0018298: protein-chromophore linkage	1.37E-03
52	GO:0070370: cellular heat acclimation	1.57E-03
53	GO:0009637: response to blue light	1.72E-03
54	GO:0034599: cellular response to oxidative stress	1.80E-03
55	GO:0050821: protein stabilization	1.81E-03
56	GO:0045893: positive regulation of transcription, DNA-templated	1.85E-03
57	GO:0071482: cellular response to light stimulus	2.07E-03
58	GO:0009657: plastid organization	2.07E-03
59	GO:0010114: response to red light	2.21E-03
60	GO:0048507: meristem development	2.33E-03
61	GO:0010206: photosystem II repair	2.33E-03
62	GO:0034765: regulation of ion transmembrane transport	2.33E-03
63	GO:0055114: oxidation-reduction process	2.37E-03
64	GO:0010205: photoinhibition	2.61E-03
65	GO:0009638: phototropism	2.61E-03
66	GO:0015979: photosynthesis	2.66E-03
67	GO:0009641: shade avoidance	2.90E-03
68	GO:0009970: cellular response to sulfate starvation	2.90E-03
69	GO:0006995: cellular response to nitrogen starvation	2.90E-03
70	GO:0000103: sulfate assimilation	2.90E-03
71	GO:0016485: protein processing	3.20E-03
72	GO:0009773: photosynthetic electron transport in photosystem I	3.20E-03
73	GO:0008285: negative regulation of cell proliferation	3.20E-03
74	GO:0009767: photosynthetic electron transport chain	3.82E-03
75	GO:0005986: sucrose biosynthetic process	3.82E-03
76	GO:0010223: secondary shoot formation	4.15E-03
77	GO:0007015: actin filament organization	4.15E-03
78	GO:0006071: glycerol metabolic process	4.83E-03
79	GO:0051017: actin filament bundle assembly	5.19E-03
80	GO:0019344: cysteine biosynthetic process	5.19E-03
81	GO:0010073: meristem maintenance	5.55E-03
82	GO:0010227: floral organ abscission	6.70E-03
83	GO:0009409: response to cold	6.93E-03
84	GO:0006817: phosphate ion transport	7.10E-03
85	GO:0010118: stomatal movement	7.93E-03
86	GO:0006606: protein import into nucleus	7.93E-03
87	GO:0042391: regulation of membrane potential	7.93E-03
88	GO:0009739: response to gibberellin	8.10E-03
89	GO:0006662: glycerol ether metabolic process	8.35E-03
90	GO:0010182: sugar mediated signaling pathway	8.35E-03
91	GO:0009741: response to brassinosteroid	8.35E-03
92	GO:0010468: regulation of gene expression	8.64E-03
93	GO:0042752: regulation of circadian rhythm	8.79E-03
94	GO:0019252: starch biosynthetic process	9.23E-03
95	GO:0009791: post-embryonic development	9.23E-03
96	GO:0009567: double fertilization forming a zygote and endosperm	1.11E-02
97	GO:0071805: potassium ion transmembrane transport	1.16E-02
98	GO:0010027: thylakoid membrane organization	1.25E-02
99	GO:0009723: response to ethylene	1.30E-02
100	GO:0009737: response to abscisic acid	1.38E-02
101	GO:0008219: cell death	1.51E-02
102	GO:0000160: phosphorelay signal transduction system	1.57E-02
103	GO:0010218: response to far red light	1.62E-02
104	GO:0006811: ion transport	1.62E-02
105	GO:0010043: response to zinc ion	1.68E-02
106	GO:0007568: aging	1.68E-02
107	GO:0009751: response to salicylic acid	2.03E-02
108	GO:0006281: DNA repair	2.06E-02
109	GO:0042542: response to hydrogen peroxide	2.08E-02
110	GO:0009640: photomorphogenesis	2.14E-02
111	GO:0009753: response to jasmonic acid	2.21E-02
112	GO:0009644: response to high light intensity	2.27E-02
113	GO:0006508: proteolysis	2.37E-02
114	GO:0042538: hyperosmotic salinity response	2.52E-02
115	GO:0006417: regulation of translation	2.85E-02
116	GO:0006096: glycolytic process	2.99E-02
117	GO:0006810: transport	3.02E-02
118	GO:0046686: response to cadmium ion	3.24E-02
119	GO:0009735: response to cytokinin	3.34E-02
120	GO:0009624: response to nematode	3.41E-02
121	GO:0006396: RNA processing	3.48E-02
122	GO:0051726: regulation of cell cycle	3.55E-02
123	GO:0035556: intracellular signal transduction	3.85E-02
124	GO:0042744: hydrogen peroxide catabolic process	4.38E-02
125	GO:0016036: cellular response to phosphate starvation	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
2	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
3	GO:0050342: tocopherol O-methyltransferase activity	0.00E+00
4	GO:0009673: low-affinity phosphate transmembrane transporter activity	0.00E+00
5	GO:0050347: trans-octaprenyltranstransferase activity	4.96E-07
6	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	4.96E-07
7	GO:0003913: DNA photolyase activity	1.89E-06
8	GO:0001053: plastid sigma factor activity	8.50E-06
9	GO:0016987: sigma factor activity	8.50E-06
10	GO:0008237: metallopeptidase activity	5.99E-05
11	GO:0000989: transcription factor activity, transcription factor binding	8.49E-05
12	GO:0004328: formamidase activity	9.69E-05
13	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	9.69E-05
14	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	9.69E-05
15	GO:0035671: enone reductase activity	9.69E-05
16	GO:0016783: sulfurtransferase activity	9.69E-05
17	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	9.69E-05
18	GO:0019904: protein domain specific binding	1.44E-04
19	GO:0016887: ATPase activity	2.15E-04
20	GO:0033741: adenylyl-sulfate reductase (glutathione) activity	2.28E-04
21	GO:0033201: alpha-1,4-glucan synthase activity	2.28E-04
22	GO:0004046: aminoacylase activity	2.28E-04
23	GO:0009973: adenylyl-sulfate reductase activity	2.28E-04
24	GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity	2.28E-04
25	GO:0004176: ATP-dependent peptidase activity	3.74E-04
26	GO:0004096: catalase activity	3.80E-04
27	GO:0004180: carboxypeptidase activity	3.80E-04
28	GO:0010277: chlorophyllide a oxygenase [overall] activity	3.80E-04
29	GO:0004373: glycogen (starch) synthase activity	3.80E-04
30	GO:0004848: ureidoglycolate hydrolase activity	3.80E-04
31	GO:0004557: alpha-galactosidase activity	3.80E-04
32	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	3.80E-04
33	GO:0050307: sucrose-phosphate phosphatase activity	3.80E-04
34	GO:0009882: blue light photoreceptor activity	5.46E-04
35	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	5.46E-04
36	GO:0048027: mRNA 5'-UTR binding	5.46E-04
37	GO:0016851: magnesium chelatase activity	5.46E-04
38	GO:0004792: thiosulfate sulfurtransferase activity	5.46E-04
39	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	5.46E-04
40	GO:0010181: FMN binding	6.54E-04
41	GO:0009011: starch synthase activity	7.26E-04
42	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	8.45E-04
43	GO:0051538: 3 iron, 4 sulfur cluster binding	9.17E-04
44	GO:0004709: MAP kinase kinase kinase activity	1.12E-03
45	GO:0000293: ferric-chelate reductase activity	1.12E-03
46	GO:0005242: inward rectifier potassium channel activity	1.34E-03
47	GO:0004222: metalloendopeptidase activity	1.50E-03
48	GO:0009881: photoreceptor activity	1.57E-03
49	GO:0008889: glycerophosphodiester phosphodiesterase activity	2.33E-03
50	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.96E-03
51	GO:0005315: inorganic phosphate transmembrane transporter activity	3.82E-03
52	GO:0000155: phosphorelay sensor kinase activity	3.82E-03
53	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	3.82E-03
54	GO:0015035: protein disulfide oxidoreductase activity	4.33E-03
55	GO:0003727: single-stranded RNA binding	7.10E-03
56	GO:0047134: protein-disulfide reductase activity	7.51E-03
57	GO:0005249: voltage-gated potassium channel activity	7.93E-03
58	GO:0030551: cyclic nucleotide binding	7.93E-03
59	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	8.35E-03
60	GO:0008080: N-acetyltransferase activity	8.35E-03
61	GO:0004791: thioredoxin-disulfide reductase activity	8.79E-03
62	GO:0042802: identical protein binding	9.20E-03
63	GO:0048038: quinone binding	9.68E-03
64	GO:0005515: protein binding	1.13E-02
65	GO:0008236: serine-type peptidase activity	1.46E-02
66	GO:0050897: cobalt ion binding	1.68E-02
67	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.91E-02
68	GO:0009055: electron carrier activity	2.21E-02
69	GO:0051537: 2 iron, 2 sulfur cluster binding	2.27E-02
70	GO:0043621: protein self-association	2.27E-02
71	GO:0015293: symporter activity	2.33E-02
72	GO:0016491: oxidoreductase activity	2.63E-02
73	GO:0016746: transferase activity, transferring acyl groups	3.48E-02
74	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.07E-02
75	GO:0008565: protein transporter activity	4.54E-02
76	GO:0008270: zinc ion binding	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	8.21E-12
2	GO:0009535: chloroplast thylakoid membrane	7.51E-07
3	GO:0045254: pyruvate dehydrogenase complex	2.28E-04
4	GO:0009570: chloroplast stroma	2.63E-04
5	GO:0005739: mitochondrion	3.40E-04
6	GO:0042651: thylakoid membrane	3.41E-04
7	GO:0031969: chloroplast membrane	3.48E-04
8	GO:0010007: magnesium chelatase complex	3.80E-04
9	GO:0010319: stromule	9.50E-04
10	GO:0009941: chloroplast envelope	1.38E-03
11	GO:0009501: amyloplast	1.81E-03
12	GO:0031982: vesicle	1.81E-03
13	GO:0009534: chloroplast thylakoid	2.00E-03
14	GO:0009514: glyoxysome	2.07E-03
15	GO:0042644: chloroplast nucleoid	2.33E-03
16	GO:0005884: actin filament	3.20E-03
17	GO:0009706: chloroplast inner membrane	4.20E-03
18	GO:0009532: plastid stroma	5.93E-03
19	GO:0009536: plastid	5.97E-03
20	GO:0009579: thylakoid	9.56E-03
21	GO:0031977: thylakoid lumen	2.02E-02
22	GO:0010287: plastoglobule	3.85E-02
23	GO:0009543: chloroplast thylakoid lumen	4.00E-02
24	GO:0005777: peroxisome	4.19E-02
25	GO:0005759: mitochondrial matrix	4.70E-02