Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G06680

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006114: glycerol biosynthetic process0.00E+00
2GO:0018023: peptidyl-lysine trimethylation0.00E+00
3GO:0071474: cellular hyperosmotic response0.00E+00
4GO:1903428: positive regulation of reactive oxygen species biosynthetic process0.00E+00
5GO:2000505: regulation of energy homeostasis0.00E+00
6GO:0090279: regulation of calcium ion import0.00E+00
7GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
8GO:0061635: regulation of protein complex stability0.00E+00
9GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
10GO:0005996: monosaccharide metabolic process0.00E+00
11GO:0015717: triose phosphate transport0.00E+00
12GO:0016118: carotenoid catabolic process0.00E+00
13GO:0015979: photosynthesis7.43E-42
14GO:0009768: photosynthesis, light harvesting in photosystem I1.81E-21
15GO:0018298: protein-chromophore linkage1.42E-20
16GO:0009645: response to low light intensity stimulus1.93E-12
17GO:0009644: response to high light intensity1.65E-10
18GO:0010196: nonphotochemical quenching4.71E-10
19GO:0010207: photosystem II assembly7.40E-10
20GO:0009409: response to cold2.57E-09
21GO:0010027: thylakoid membrane organization5.42E-09
22GO:0015995: chlorophyll biosynthetic process1.01E-08
23GO:0009773: photosynthetic electron transport in photosystem I1.67E-08
24GO:0042549: photosystem II stabilization1.75E-08
25GO:0010218: response to far red light2.16E-08
26GO:0009735: response to cytokinin2.33E-08
27GO:0009769: photosynthesis, light harvesting in photosystem II7.60E-08
28GO:0010114: response to red light9.33E-08
29GO:0010205: photoinhibition5.64E-07
30GO:0009765: photosynthesis, light harvesting6.29E-07
31GO:0009637: response to blue light9.34E-07
32GO:0006094: gluconeogenesis2.24E-06
33GO:0030388: fructose 1,6-bisphosphate metabolic process5.43E-06
34GO:0035304: regulation of protein dephosphorylation5.43E-06
35GO:0090391: granum assembly1.92E-05
36GO:0006000: fructose metabolic process1.92E-05
37GO:0010206: photosystem II repair2.25E-05
38GO:0018119: peptidyl-cysteine S-nitrosylation4.96E-05
39GO:0043085: positive regulation of catalytic activity4.96E-05
40GO:0019464: glycine decarboxylation via glycine cleavage system7.53E-05
41GO:0006109: regulation of carbohydrate metabolic process7.53E-05
42GO:0006546: glycine catabolic process7.53E-05
43GO:0006021: inositol biosynthetic process7.53E-05
44GO:0006006: glucose metabolic process7.58E-05
45GO:0045454: cell redox homeostasis7.79E-05
46GO:0019253: reductive pentose-phosphate cycle9.14E-05
47GO:0006096: glycolytic process9.38E-05
48GO:0009416: response to light stimulus1.30E-04
49GO:0006412: translation1.86E-04
50GO:0009269: response to desiccation1.98E-04
51GO:0000481: maturation of 5S rRNA3.47E-04
52GO:1904964: positive regulation of phytol biosynthetic process3.47E-04
53GO:0065002: intracellular protein transmembrane transport3.47E-04
54GO:0043686: co-translational protein modification3.47E-04
55GO:0080093: regulation of photorespiration3.47E-04
56GO:0043007: maintenance of rDNA3.47E-04
57GO:0031998: regulation of fatty acid beta-oxidation3.47E-04
58GO:1902458: positive regulation of stomatal opening3.47E-04
59GO:0034337: RNA folding3.47E-04
60GO:1904966: positive regulation of vitamin E biosynthetic process3.47E-04
61GO:0043953: protein transport by the Tat complex3.47E-04
62GO:0005978: glycogen biosynthetic process3.76E-04
63GO:0009642: response to light intensity3.76E-04
64GO:0006662: glycerol ether metabolic process3.90E-04
65GO:0006002: fructose 6-phosphate metabolic process4.61E-04
66GO:0032544: plastid translation4.61E-04
67GO:0006098: pentose-phosphate shunt5.52E-04
68GO:0097054: L-glutamate biosynthetic process7.56E-04
69GO:0006729: tetrahydrobiopterin biosynthetic process7.56E-04
70GO:1903426: regulation of reactive oxygen species biosynthetic process7.56E-04
71GO:0016121: carotene catabolic process7.56E-04
72GO:0051262: protein tetramerization7.56E-04
73GO:0016124: xanthophyll catabolic process7.56E-04
74GO:0019388: galactose catabolic process7.56E-04
75GO:1902326: positive regulation of chlorophyll biosynthetic process7.56E-04
76GO:0018026: peptidyl-lysine monomethylation7.56E-04
77GO:0019684: photosynthesis, light reaction8.76E-04
78GO:0042254: ribosome biogenesis9.10E-04
79GO:0045037: protein import into chloroplast stroma1.00E-03
80GO:0016311: dephosphorylation1.07E-03
81GO:0005986: sucrose biosynthetic process1.13E-03
82GO:0071492: cellular response to UV-A1.22E-03
83GO:0016050: vesicle organization1.22E-03
84GO:0035436: triose phosphate transmembrane transport1.22E-03
85GO:0034599: cellular response to oxidative stress1.62E-03
86GO:0042823: pyridoxal phosphate biosynthetic process1.76E-03
87GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.76E-03
88GO:0006020: inositol metabolic process1.76E-03
89GO:0071484: cellular response to light intensity1.76E-03
90GO:0006537: glutamate biosynthetic process1.76E-03
91GO:0009590: detection of gravity1.76E-03
92GO:0061077: chaperone-mediated protein folding2.13E-03
93GO:0015713: phosphoglycerate transport2.37E-03
94GO:0010021: amylopectin biosynthetic process2.37E-03
95GO:0019676: ammonia assimilation cycle2.37E-03
96GO:0015976: carbon utilization2.37E-03
97GO:0071486: cellular response to high light intensity2.37E-03
98GO:0045727: positive regulation of translation2.37E-03
99GO:0030104: water homeostasis2.37E-03
100GO:0015994: chlorophyll metabolic process2.37E-03
101GO:0042742: defense response to bacterium2.58E-03
102GO:0016117: carotenoid biosynthetic process3.00E-03
103GO:0031365: N-terminal protein amino acid modification3.03E-03
104GO:0006097: glyoxylate cycle3.03E-03
105GO:0035434: copper ion transmembrane transport3.03E-03
106GO:0016123: xanthophyll biosynthetic process3.03E-03
107GO:0000304: response to singlet oxygen3.03E-03
108GO:0032543: mitochondrial translation3.03E-03
109GO:0010236: plastoquinone biosynthetic process3.03E-03
110GO:0016120: carotene biosynthetic process3.03E-03
111GO:0045038: protein import into chloroplast thylakoid membrane3.03E-03
112GO:0055114: oxidation-reduction process3.34E-03
113GO:0050665: hydrogen peroxide biosynthetic process3.74E-03
114GO:0046855: inositol phosphate dephosphorylation3.74E-03
115GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione3.74E-03
116GO:0010264: myo-inositol hexakisphosphate biosynthetic process3.74E-03
117GO:0009635: response to herbicide3.74E-03
118GO:0009643: photosynthetic acclimation3.74E-03
119GO:0006814: sodium ion transport3.75E-03
120GO:0009658: chloroplast organization3.94E-03
121GO:0019252: starch biosynthetic process4.02E-03
122GO:0030488: tRNA methylation4.50E-03
123GO:1901259: chloroplast rRNA processing4.50E-03
124GO:0010189: vitamin E biosynthetic process4.50E-03
125GO:0009854: oxidative photosynthetic carbon pathway4.50E-03
126GO:0009955: adaxial/abaxial pattern specification4.50E-03
127GO:0009772: photosynthetic electron transport in photosystem II5.32E-03
128GO:0071446: cellular response to salicylic acid stimulus5.32E-03
129GO:1900057: positive regulation of leaf senescence5.32E-03
130GO:0009793: embryo development ending in seed dormancy5.99E-03
131GO:2000070: regulation of response to water deprivation6.17E-03
132GO:0016559: peroxisome fission6.17E-03
133GO:0032508: DNA duplex unwinding6.17E-03
134GO:2000031: regulation of salicylic acid mediated signaling pathway7.08E-03
135GO:0015996: chlorophyll catabolic process7.08E-03
136GO:0007186: G-protein coupled receptor signaling pathway7.08E-03
137GO:0006754: ATP biosynthetic process8.04E-03
138GO:0009245: lipid A biosynthetic process8.04E-03
139GO:0090333: regulation of stomatal closure8.04E-03
140GO:0005982: starch metabolic process9.03E-03
141GO:0006779: porphyrin-containing compound biosynthetic process9.03E-03
142GO:0048829: root cap development1.01E-02
143GO:0031627: telomeric loop formation1.01E-02
144GO:0006782: protoporphyrinogen IX biosynthetic process1.01E-02
145GO:0009750: response to fructose1.12E-02
146GO:0009073: aromatic amino acid family biosynthetic process1.12E-02
147GO:0000272: polysaccharide catabolic process1.12E-02
148GO:0006790: sulfur compound metabolic process1.23E-02
149GO:0005983: starch catabolic process1.23E-02
150GO:0009744: response to sucrose1.34E-02
151GO:0009767: photosynthetic electron transport chain1.34E-02
152GO:0010628: positive regulation of gene expression1.34E-02
153GO:0006108: malate metabolic process1.34E-02
154GO:0010020: chloroplast fission1.46E-02
155GO:0046854: phosphatidylinositol phosphorylation1.59E-02
156GO:0005985: sucrose metabolic process1.59E-02
157GO:0006810: transport1.67E-02
158GO:0006636: unsaturated fatty acid biosynthetic process1.71E-02
159GO:0006289: nucleotide-excision repair1.85E-02
160GO:0046686: response to cadmium ion1.87E-02
161GO:0006825: copper ion transport1.98E-02
162GO:0019915: lipid storage2.12E-02
163GO:0031408: oxylipin biosynthetic process2.12E-02
164GO:0043086: negative regulation of catalytic activity2.14E-02
165GO:0071215: cellular response to abscisic acid stimulus2.40E-02
166GO:0009561: megagametogenesis2.55E-02
167GO:0042631: cellular response to water deprivation2.85E-02
168GO:0042335: cuticle development2.85E-02
169GO:0010182: sugar mediated signaling pathway3.01E-02
170GO:0015986: ATP synthesis coupled proton transport3.17E-02
171GO:0008654: phospholipid biosynthetic process3.33E-02
172GO:0009791: post-embryonic development3.33E-02
173GO:0071554: cell wall organization or biogenesis3.50E-02
174GO:0048235: pollen sperm cell differentiation3.67E-02
175GO:0009567: double fertilization forming a zygote and endosperm4.01E-02
176GO:0006633: fatty acid biosynthetic process4.04E-02
177GO:0051607: defense response to virus4.36E-02
178GO:0007623: circadian rhythm4.43E-02
179GO:0009627: systemic acquired resistance4.91E-02
RankGO TermAdjusted P value
1GO:0046408: chlorophyll synthetase activity0.00E+00
2GO:0043136: glycerol-3-phosphatase activity0.00E+00
3GO:0000121: glycerol-1-phosphatase activity0.00E+00
4GO:0030504: inorganic diphosphate transmembrane transporter activity0.00E+00
5GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
6GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
7GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
8GO:0010242: oxygen evolving activity0.00E+00
9GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
10GO:0016166: phytoene dehydrogenase activity0.00E+00
11GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
12GO:0031409: pigment binding3.26E-22
13GO:0016168: chlorophyll binding2.55E-21
14GO:0019843: rRNA binding6.77E-09
15GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity5.43E-06
16GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.43E-06
17GO:0003735: structural constituent of ribosome8.82E-06
18GO:0008047: enzyme activator activity3.90E-05
19GO:0016851: magnesium chelatase activity4.24E-05
20GO:0004375: glycine dehydrogenase (decarboxylating) activity4.24E-05
21GO:0008266: poly(U) RNA binding9.14E-05
22GO:0004332: fructose-bisphosphate aldolase activity1.70E-04
23GO:0046872: metal ion binding2.37E-04
24GO:0047134: protein-disulfide reductase activity3.18E-04
25GO:0042586: peptide deformylase activity3.47E-04
26GO:0045485: omega-6 fatty acid desaturase activity3.47E-04
27GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity3.47E-04
28GO:0016041: glutamate synthase (ferredoxin) activity3.47E-04
29GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.47E-04
30GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity3.47E-04
31GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity3.47E-04
32GO:0005227: calcium activated cation channel activity3.47E-04
33GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity3.47E-04
34GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.47E-04
35GO:0004791: thioredoxin-disulfide reductase activity4.29E-04
36GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor6.06E-04
37GO:0004512: inositol-3-phosphate synthase activity7.56E-04
38GO:0008967: phosphoglycolate phosphatase activity7.56E-04
39GO:0010291: carotene beta-ring hydroxylase activity7.56E-04
40GO:0047746: chlorophyllase activity7.56E-04
41GO:0010297: heteropolysaccharide binding7.56E-04
42GO:0009977: proton motive force dependent protein transmembrane transporter activity7.56E-04
43GO:0052832: inositol monophosphate 3-phosphatase activity7.56E-04
44GO:0003844: 1,4-alpha-glucan branching enzyme activity7.56E-04
45GO:0004614: phosphoglucomutase activity7.56E-04
46GO:0008934: inositol monophosphate 1-phosphatase activity7.56E-04
47GO:0052833: inositol monophosphate 4-phosphatase activity7.56E-04
48GO:0015035: protein disulfide oxidoreductase activity9.23E-04
49GO:0031072: heat shock protein binding1.13E-03
50GO:0071917: triose-phosphate transmembrane transporter activity1.22E-03
51GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.22E-03
52GO:0004324: ferredoxin-NADP+ reductase activity1.22E-03
53GO:0005504: fatty acid binding1.22E-03
54GO:0043169: cation binding1.22E-03
55GO:0003913: DNA photolyase activity1.22E-03
56GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.76E-03
57GO:0008508: bile acid:sodium symporter activity1.76E-03
58GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity1.76E-03
59GO:0004857: enzyme inhibitor activity1.76E-03
60GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity1.76E-03
61GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.76E-03
62GO:0005528: FK506 binding1.76E-03
63GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity1.76E-03
64GO:0043495: protein anchor2.37E-03
65GO:0008891: glycolate oxidase activity2.37E-03
66GO:0015120: phosphoglycerate transmembrane transporter activity2.37E-03
67GO:0016279: protein-lysine N-methyltransferase activity2.37E-03
68GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.37E-03
69GO:0080032: methyl jasmonate esterase activity2.37E-03
70GO:0045430: chalcone isomerase activity2.37E-03
71GO:0022891: substrate-specific transmembrane transporter activity2.54E-03
72GO:0042802: identical protein binding2.92E-03
73GO:0051538: 3 iron, 4 sulfur cluster binding3.03E-03
74GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity3.03E-03
75GO:0003959: NADPH dehydrogenase activity3.03E-03
76GO:0016615: malate dehydrogenase activity3.74E-03
77GO:0080030: methyl indole-3-acetate esterase activity3.74E-03
78GO:0031177: phosphopantetheine binding3.74E-03
79GO:0004462: lactoylglutathione lyase activity3.74E-03
80GO:0005261: cation channel activity4.50E-03
81GO:0051920: peroxiredoxin activity4.50E-03
82GO:0004017: adenylate kinase activity4.50E-03
83GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.50E-03
84GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.50E-03
85GO:0000035: acyl binding4.50E-03
86GO:0030060: L-malate dehydrogenase activity4.50E-03
87GO:0009881: photoreceptor activity5.32E-03
88GO:0019899: enzyme binding5.32E-03
89GO:0004033: aldo-keto reductase (NADP) activity6.17E-03
90GO:0016209: antioxidant activity6.17E-03
91GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process6.17E-03
92GO:0005509: calcium ion binding6.79E-03
93GO:0008135: translation factor activity, RNA binding7.08E-03
94GO:0008173: RNA methyltransferase activity7.08E-03
95GO:0005375: copper ion transmembrane transporter activity7.08E-03
96GO:0071949: FAD binding8.04E-03
97GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity9.03E-03
98GO:0030234: enzyme regulator activity1.01E-02
99GO:0003746: translation elongation factor activity1.03E-02
100GO:0003691: double-stranded telomeric DNA binding1.12E-02
101GO:0050661: NADP binding1.18E-02
102GO:0016787: hydrolase activity1.33E-02
103GO:0005315: inorganic phosphate transmembrane transporter activity1.34E-02
104GO:0004089: carbonate dehydratase activity1.34E-02
105GO:0004565: beta-galactosidase activity1.34E-02
106GO:0016491: oxidoreductase activity1.36E-02
107GO:0005198: structural molecule activity1.50E-02
108GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.56E-02
109GO:0051287: NAD binding1.62E-02
110GO:0005515: protein binding1.68E-02
111GO:0030570: pectate lyase activity2.40E-02
112GO:0008514: organic anion transmembrane transporter activity2.55E-02
113GO:0003756: protein disulfide isomerase activity2.55E-02
114GO:0051082: unfolded protein binding2.57E-02
115GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.01E-02
116GO:0050662: coenzyme binding3.17E-02
117GO:0010181: FMN binding3.17E-02
118GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen3.31E-02
119GO:0016829: lyase activity3.48E-02
120GO:0048038: quinone binding3.50E-02
121GO:0008483: transaminase activity4.19E-02
122GO:0016413: O-acetyltransferase activity4.36E-02
RankGO TermAdjusted P value
1GO:0042579: microbody0.00E+00
2GO:0043235: receptor complex0.00E+00
3GO:0009783: photosystem II antenna complex0.00E+00
4GO:0009515: granal stacked thylakoid0.00E+00
5GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
6GO:0009507: chloroplast2.94E-92
7GO:0009535: chloroplast thylakoid membrane1.23E-80
8GO:0009534: chloroplast thylakoid1.11E-76
9GO:0009941: chloroplast envelope1.34E-60
10GO:0009579: thylakoid2.48E-55
11GO:0009570: chloroplast stroma4.72E-43
12GO:0010287: plastoglobule2.36E-33
13GO:0009522: photosystem I2.67E-21
14GO:0009523: photosystem II4.72E-21
15GO:0009543: chloroplast thylakoid lumen3.44E-19
16GO:0030076: light-harvesting complex5.86E-18
17GO:0030095: chloroplast photosystem II4.72E-16
18GO:0031977: thylakoid lumen5.02E-14
19GO:0009538: photosystem I reaction center5.26E-12
20GO:0048046: apoplast2.81E-11
21GO:0009517: PSII associated light-harvesting complex II1.94E-09
22GO:0010319: stromule3.46E-09
23GO:0009654: photosystem II oxygen evolving complex3.46E-09
24GO:0019898: extrinsic component of membrane4.35E-08
25GO:0042651: thylakoid membrane1.93E-07
26GO:0016020: membrane1.94E-07
27GO:0005840: ribosome2.84E-07
28GO:0009706: chloroplast inner membrane1.41E-05
29GO:0010007: magnesium chelatase complex1.92E-05
30GO:0005960: glycine cleavage complex4.24E-05
31GO:0031969: chloroplast membrane4.69E-05
32GO:0009533: chloroplast stromal thylakoid2.99E-04
33GO:0031361: integral component of thylakoid membrane3.47E-04
34GO:0009782: photosystem I antenna complex3.47E-04
35GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.52E-04
36GO:0016021: integral component of membrane6.44E-04
37GO:0000427: plastid-encoded plastid RNA polymerase complex7.56E-04
38GO:0030093: chloroplast photosystem I7.56E-04
39GO:0009508: plastid chromosome1.13E-03
40GO:0009528: plastid inner membrane1.22E-03
41GO:0033281: TAT protein transport complex1.22E-03
42GO:0009509: chromoplast1.22E-03
43GO:0015934: large ribosomal subunit1.37E-03
44GO:0015935: small ribosomal subunit2.13E-03
45GO:0009544: chloroplast ATP synthase complex2.37E-03
46GO:0009527: plastid outer membrane2.37E-03
47GO:0055035: plastid thylakoid membrane3.03E-03
48GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)3.74E-03
49GO:0009295: nucleoid5.55E-03
50GO:0009501: amyloplast6.17E-03
51GO:0005623: cell6.70E-03
52GO:0000783: nuclear telomere cap complex7.08E-03
53GO:0005763: mitochondrial small ribosomal subunit8.04E-03
54GO:0008180: COP9 signalosome8.04E-03
55GO:0009707: chloroplast outer membrane8.14E-03
56GO:0032040: small-subunit processome1.23E-02
57GO:0043234: protein complex1.71E-02
58GO:0009532: plastid stroma2.12E-02
59GO:0022626: cytosolic ribosome2.19E-02
60GO:0005777: peroxisome2.87E-02
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Gene type



Gene DE type