co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G06500

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
2	GO:0048856: anatomical structure development	0.00E+00
3	GO:0016576: histone dephosphorylation	0.00E+00
4	GO:0006907: pinocytosis	0.00E+00
5	GO:0042371: vitamin K biosynthetic process	5.64E-05
6	GO:0045488: pectin metabolic process	5.64E-05
7	GO:0048438: floral whorl development	5.64E-05
8	GO:0010275: NAD(P)H dehydrogenase complex assembly	1.37E-04
9	GO:0035335: peptidyl-tyrosine dephosphorylation	1.37E-04
10	GO:0045739: positive regulation of DNA repair	2.34E-04
11	GO:0042274: ribosomal small subunit biogenesis	4.56E-04
12	GO:0031935: regulation of chromatin silencing	4.56E-04
13	GO:0009765: photosynthesis, light harvesting	4.56E-04
14	GO:0016120: carotene biosynthetic process	5.78E-04
15	GO:0016123: xanthophyll biosynthetic process	5.78E-04
16	GO:0010076: maintenance of floral meristem identity	8.44E-04
17	GO:0017148: negative regulation of translation	8.44E-04
18	GO:0010196: nonphotochemical quenching	9.85E-04
19	GO:0080111: DNA demethylation	9.85E-04
20	GO:0050829: defense response to Gram-negative bacterium	9.85E-04
21	GO:0042255: ribosome assembly	1.13E-03
22	GO:0006353: DNA-templated transcription, termination	1.13E-03
23	GO:0010582: floral meristem determinacy	2.16E-03
24	GO:0009767: photosynthetic electron transport chain	2.36E-03
25	GO:0009266: response to temperature stimulus	2.56E-03
26	GO:0006289: nucleotide-excision repair	3.18E-03
27	GO:0007017: microtubule-based process	3.40E-03
28	GO:0009451: RNA modification	3.63E-03
29	GO:0016117: carotenoid biosynthetic process	4.58E-03
30	GO:0008033: tRNA processing	4.83E-03
31	GO:0009958: positive gravitropism	5.09E-03
32	GO:0006342: chromatin silencing	5.09E-03
33	GO:0032502: developmental process	6.15E-03
34	GO:0080167: response to karrikin	6.77E-03
35	GO:0000910: cytokinesis	7.29E-03
36	GO:0016126: sterol biosynthetic process	7.59E-03
37	GO:0000160: phosphorelay signal transduction system	9.45E-03
38	GO:0006811: ion transport	9.78E-03
39	GO:0009910: negative regulation of flower development	1.01E-02
40	GO:0008283: cell proliferation	1.29E-02
41	GO:0006260: DNA replication	1.48E-02
42	GO:0000165: MAPK cascade	1.48E-02
43	GO:0009736: cytokinin-activated signaling pathway	1.59E-02
44	GO:0042545: cell wall modification	2.00E-02
45	GO:0009793: embryo development ending in seed dormancy	2.16E-02
46	GO:0006413: translational initiation	2.87E-02
47	GO:0045490: pectin catabolic process	3.02E-02
48	GO:0006470: protein dephosphorylation	3.32E-02
49	GO:0008380: RNA splicing	3.42E-02
50	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	3.90E-02
51	GO:0030154: cell differentiation	3.92E-02
52	GO:0009658: chloroplast organization	4.12E-02
53	GO:0048366: leaf development	4.62E-02
54	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
2	GO:0030946: protein tyrosine phosphatase activity, metal-dependent	0.00E+00
3	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
4	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
5	GO:0000900: translation repressor activity, nucleic acid binding	2.34E-04
6	GO:0043023: ribosomal large subunit binding	3.41E-04
7	GO:0003690: double-stranded DNA binding	1.52E-03
8	GO:0003887: DNA-directed DNA polymerase activity	2.97E-03
9	GO:0003727: single-stranded RNA binding	4.34E-03
10	GO:0003713: transcription coactivator activity	5.09E-03
11	GO:0048038: quinone binding	5.88E-03
12	GO:0004518: nuclease activity	6.15E-03
13	GO:0000156: phosphorelay response regulator activity	6.43E-03
14	GO:0008483: transaminase activity	7.00E-03
15	GO:0003723: RNA binding	9.97E-03
16	GO:0016491: oxidoreductase activity	1.06E-02
17	GO:0004519: endonuclease activity	1.09E-02
18	GO:0003777: microtubule motor activity	1.71E-02
19	GO:0045330: aspartyl esterase activity	1.71E-02
20	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.83E-02
21	GO:0030599: pectinesterase activity	1.96E-02
22	GO:0019843: rRNA binding	2.40E-02
23	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.45E-02
24	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	2.63E-02
25	GO:0008194: UDP-glycosyltransferase activity	3.27E-02
26	GO:0003743: translation initiation factor activity	3.37E-02
27	GO:0042802: identical protein binding	3.58E-02
28	GO:0003674: molecular_function	3.66E-02
29	GO:0008168: methyltransferase activity	4.01E-02
30	GO:0046982: protein heterodimerization activity	4.06E-02

Rank	GO Term	Adjusted P value
1	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.71E-05
2	GO:0009507: chloroplast	1.64E-04
3	GO:0030286: dynein complex	4.56E-04
4	GO:0009840: chloroplastic endopeptidase Clp complex	8.44E-04
5	GO:0000123: histone acetyltransferase complex	9.85E-04
6	GO:0046930: pore complex	1.29E-03
7	GO:0005875: microtubule associated complex	2.97E-03
8	GO:0042651: thylakoid membrane	3.40E-03
9	GO:0000790: nuclear chromatin	4.58E-03
10	GO:0000786: nucleosome	1.04E-02
11	GO:0043231: intracellular membrane-bounded organelle	1.10E-02
12	GO:0009570: chloroplast stroma	2.49E-02
13	GO:0009505: plant-type cell wall	4.51E-02
14	GO:0031969: chloroplast membrane	4.80E-02