Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G05940

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010202: response to low fluence red light stimulus0.00E+00
2GO:0009583: detection of light stimulus0.00E+00
3GO:0017012: protein-phytochromobilin linkage0.00E+00
4GO:0071000: response to magnetism0.00E+00
5GO:0010343: singlet oxygen-mediated programmed cell death3.97E-08
6GO:0010617: circadian regulation of calcium ion oscillation3.97E-08
7GO:0010244: response to low fluence blue light stimulus by blue low-fluence system2.93E-06
8GO:0009638: phototropism1.14E-05
9GO:0072387: flavin adenine dinucleotide metabolic process2.30E-05
10GO:0006567: threonine catabolic process2.30E-05
11GO:0006007: glucose catabolic process2.30E-05
12GO:1902000: homogentisate catabolic process5.89E-05
13GO:0099402: plant organ development5.89E-05
14GO:0019441: tryptophan catabolic process to kynurenine5.89E-05
15GO:0080183: response to photooxidative stress5.89E-05
16GO:1901529: positive regulation of anion channel activity5.89E-05
17GO:2000030: regulation of response to red or far red light5.89E-05
18GO:0010118: stomatal movement8.26E-05
19GO:0006520: cellular amino acid metabolic process9.01E-05
20GO:1901562: response to paraquat1.04E-04
21GO:0009072: aromatic amino acid family metabolic process1.04E-04
22GO:1902448: positive regulation of shade avoidance1.04E-04
23GO:1901672: positive regulation of systemic acquired resistance1.04E-04
24GO:0006572: tyrosine catabolic process1.55E-04
25GO:0009584: detection of visible light1.55E-04
26GO:0010148: transpiration1.55E-04
27GO:0006516: glycoprotein catabolic process1.55E-04
28GO:1901332: negative regulation of lateral root development1.55E-04
29GO:1902347: response to strigolactone2.12E-04
30GO:0034613: cellular protein localization2.12E-04
31GO:0009687: abscisic acid metabolic process2.12E-04
32GO:0006545: glycine biosynthetic process2.12E-04
33GO:0051567: histone H3-K9 methylation2.12E-04
34GO:0009649: entrainment of circadian clock2.12E-04
35GO:0006749: glutathione metabolic process2.12E-04
36GO:0018298: protein-chromophore linkage2.25E-04
37GO:0010218: response to far red light2.49E-04
38GO:0010117: photoprotection2.73E-04
39GO:0046283: anthocyanin-containing compound metabolic process2.73E-04
40GO:0000304: response to singlet oxygen2.73E-04
41GO:0009117: nucleotide metabolic process3.37E-04
42GO:0016458: gene silencing3.37E-04
43GO:0010304: PSII associated light-harvesting complex II catabolic process3.37E-04
44GO:1901371: regulation of leaf morphogenesis3.37E-04
45GO:0060918: auxin transport3.37E-04
46GO:0009640: photomorphogenesis3.70E-04
47GO:0010310: regulation of hydrogen peroxide metabolic process4.04E-04
48GO:0051510: regulation of unidimensional cell growth4.74E-04
49GO:0050790: regulation of catalytic activity4.74E-04
50GO:0010374: stomatal complex development4.74E-04
51GO:0010161: red light signaling pathway4.74E-04
52GO:0051603: proteolysis involved in cellular protein catabolic process5.12E-04
53GO:0015996: chlorophyll catabolic process6.21E-04
54GO:1900426: positive regulation of defense response to bacterium7.77E-04
55GO:0006325: chromatin organization8.59E-04
56GO:0006879: cellular iron ion homeostasis9.42E-04
57GO:2000028: regulation of photoperiodism, flowering1.12E-03
58GO:0010075: regulation of meristem growth1.12E-03
59GO:0009785: blue light signaling pathway1.12E-03
60GO:0009266: response to temperature stimulus1.20E-03
61GO:2000377: regulation of reactive oxygen species metabolic process1.49E-03
62GO:0006487: protein N-linked glycosylation1.49E-03
63GO:0006306: DNA methylation1.70E-03
64GO:0016226: iron-sulfur cluster assembly1.80E-03
65GO:0006012: galactose metabolic process1.91E-03
66GO:0009693: ethylene biosynthetic process1.91E-03
67GO:0010051: xylem and phloem pattern formation2.24E-03
68GO:0010087: phloem or xylem histogenesis2.24E-03
69GO:0042752: regulation of circadian rhythm2.48E-03
70GO:0009646: response to absence of light2.48E-03
71GO:0009630: gravitropism2.84E-03
72GO:0010029: regulation of seed germination3.62E-03
73GO:0008219: cell death4.17E-03
74GO:0009407: toxin catabolic process4.46E-03
75GO:0007568: aging4.60E-03
76GO:0009637: response to blue light4.90E-03
77GO:0009867: jasmonic acid mediated signaling pathway4.90E-03
78GO:0006897: endocytosis5.52E-03
79GO:0010114: response to red light5.84E-03
80GO:0009644: response to high light intensity6.16E-03
81GO:0009636: response to toxic substance6.33E-03
82GO:0009965: leaf morphogenesis6.33E-03
83GO:0031347: regulation of defense response6.66E-03
84GO:0009585: red, far-red light phototransduction7.18E-03
85GO:0006508: proteolysis7.18E-03
86GO:0006096: glycolytic process8.06E-03
87GO:0009058: biosynthetic process1.11E-02
88GO:0007623: circadian rhythm1.35E-02
89GO:0009451: RNA modification1.37E-02
90GO:0006470: protein dephosphorylation1.48E-02
91GO:0009409: response to cold1.56E-02
92GO:0005975: carbohydrate metabolic process1.75E-02
93GO:0046686: response to cadmium ion1.79E-02
94GO:0080167: response to karrikin2.14E-02
95GO:0046777: protein autophosphorylation2.25E-02
96GO:0044550: secondary metabolite biosynthetic process2.27E-02
97GO:0015979: photosynthesis2.35E-02
98GO:0045892: negative regulation of transcription, DNA-templated2.46E-02
99GO:0016042: lipid catabolic process2.77E-02
100GO:0006629: lipid metabolic process2.83E-02
101GO:0009408: response to heat2.83E-02
102GO:0008152: metabolic process3.03E-02
103GO:0009416: response to light stimulus4.25E-02
104GO:0009555: pollen development4.25E-02
105GO:0055114: oxidation-reduction process4.32E-02
106GO:0035556: intracellular signal transduction4.42E-02
RankGO TermAdjusted P value
1GO:0008170: N-methyltransferase activity0.00E+00
2GO:0009008: DNA-methyltransferase activity0.00E+00
3GO:0004334: fumarylacetoacetase activity0.00E+00
4GO:0031517: red light photoreceptor activity0.00E+00
5GO:0008732: L-allo-threonine aldolase activity2.30E-05
6GO:0031516: far-red light photoreceptor activity2.30E-05
7GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity2.30E-05
8GO:0016784: 3-mercaptopyruvate sulfurtransferase activity2.30E-05
9GO:0004560: alpha-L-fucosidase activity2.30E-05
10GO:1990841: promoter-specific chromatin binding2.30E-05
11GO:0004793: threonine aldolase activity2.30E-05
12GO:0016783: sulfurtransferase activity2.30E-05
13GO:0009883: red or far-red light photoreceptor activity5.89E-05
14GO:0046537: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity5.89E-05
15GO:0004061: arylformamidase activity5.89E-05
16GO:0008020: G-protein coupled photoreceptor activity1.04E-04
17GO:0004557: alpha-galactosidase activity1.04E-04
18GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.55E-04
19GO:0009882: blue light photoreceptor activity1.55E-04
20GO:0035529: NADH pyrophosphatase activity1.55E-04
21GO:0004792: thiosulfate sulfurtransferase activity1.55E-04
22GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity3.37E-04
23GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity3.37E-04
24GO:0003886: DNA (cytosine-5-)-methyltransferase activity4.04E-04
25GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity5.46E-04
26GO:0004034: aldose 1-epimerase activity5.46E-04
27GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors6.98E-04
28GO:0071949: FAD binding6.98E-04
29GO:0008138: protein tyrosine/serine/threonine phosphatase activity6.98E-04
30GO:0004673: protein histidine kinase activity8.59E-04
31GO:0000155: phosphorelay sensor kinase activity1.12E-03
32GO:0004725: protein tyrosine phosphatase activity1.39E-03
33GO:0042802: identical protein binding1.47E-03
34GO:0004176: ATP-dependent peptidase activity1.70E-03
35GO:0016853: isomerase activity2.48E-03
36GO:0042803: protein homodimerization activity2.74E-03
37GO:0004672: protein kinase activity2.82E-03
38GO:0004197: cysteine-type endopeptidase activity2.84E-03
39GO:0008483: transaminase activity3.22E-03
40GO:0008237: metallopeptidase activity3.22E-03
41GO:0004806: triglyceride lipase activity3.89E-03
42GO:0005096: GTPase activator activity4.32E-03
43GO:0004222: metalloendopeptidase activity4.46E-03
44GO:0030145: manganese ion binding4.60E-03
45GO:0004364: glutathione transferase activity5.68E-03
46GO:0004185: serine-type carboxypeptidase activity5.84E-03
47GO:0035091: phosphatidylinositol binding6.16E-03
48GO:0008234: cysteine-type peptidase activity7.70E-03
49GO:0016829: lyase activity1.14E-02
50GO:0030170: pyridoxal phosphate binding1.16E-02
51GO:0042626: ATPase activity, coupled to transmembrane movement of substances1.60E-02
52GO:0016787: hydrolase activity2.47E-02
53GO:0004871: signal transducer activity2.52E-02
54GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen2.57E-02
55GO:0004519: endonuclease activity3.00E-02
56GO:0016887: ATPase activity3.86E-02
57GO:0005515: protein binding4.90E-02
RankGO TermAdjusted P value
1GO:0016604: nuclear body1.14E-05
2GO:0016605: PML body1.04E-04
3GO:0030140: trans-Golgi network transport vesicle3.37E-04
4GO:0005829: cytosol4.74E-04
5GO:0005764: lysosome1.20E-03
6GO:0005615: extracellular space1.30E-03
7GO:0042651: thylakoid membrane1.59E-03
8GO:0016607: nuclear speck8.24E-03
9GO:0005747: mitochondrial respiratory chain complex I8.24E-03
10GO:0010287: plastoglobule1.03E-02
11GO:0005654: nucleoplasm1.05E-02
12GO:0005759: mitochondrial matrix1.26E-02
13GO:0009536: plastid1.41E-02
14GO:0005773: vacuole1.44E-02
15GO:0005794: Golgi apparatus1.97E-02
16GO:0009535: chloroplast thylakoid membrane2.58E-02
17GO:0005743: mitochondrial inner membrane2.68E-02
18GO:0043231: intracellular membrane-bounded organelle3.03E-02
19GO:0048046: apoplast4.18E-02
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Gene type



Gene DE type