co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G05720

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019428: allantoin biosynthetic process	0.00E+00
2	GO:0006069: ethanol oxidation	0.00E+00
3	GO:0001881: receptor recycling	0.00E+00
4	GO:0006592: ornithine biosynthetic process	0.00E+00
5	GO:0048870: cell motility	0.00E+00
6	GO:0032211: negative regulation of telomere maintenance via telomerase	0.00E+00
7	GO:0051776: detection of redox state	0.00E+00
8	GO:0046292: formaldehyde metabolic process	0.00E+00
9	GO:0007530: sex determination	0.00E+00
10	GO:0006412: translation	4.36E-15
11	GO:0042254: ribosome biogenesis	8.46E-06
12	GO:0000028: ribosomal small subunit assembly	1.92E-05
13	GO:0008333: endosome to lysosome transport	2.82E-05
14	GO:0045454: cell redox homeostasis	1.81E-04
15	GO:0000027: ribosomal large subunit assembly	2.32E-04
16	GO:0009853: photorespiration	3.53E-04
17	GO:0031468: nuclear envelope reassembly	4.29E-04
18	GO:0006144: purine nucleobase metabolic process	4.29E-04
19	GO:0001560: regulation of cell growth by extracellular stimulus	4.29E-04
20	GO:2001006: regulation of cellulose biosynthetic process	4.29E-04
21	GO:0019628: urate catabolic process	4.29E-04
22	GO:0009240: isopentenyl diphosphate biosynthetic process	4.29E-04
23	GO:1990022: RNA polymerase III complex localization to nucleus	4.29E-04
24	GO:0044376: RNA polymerase II complex import to nucleus	4.29E-04
25	GO:0006511: ubiquitin-dependent protein catabolic process	6.72E-04
26	GO:0046685: response to arsenic-containing substance	7.50E-04
27	GO:0000387: spliceosomal snRNP assembly	8.83E-04
28	GO:0006432: phenylalanyl-tRNA aminoacylation	9.27E-04
29	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	9.27E-04
30	GO:0045905: positive regulation of translational termination	9.27E-04
31	GO:0071668: plant-type cell wall assembly	9.27E-04
32	GO:0050992: dimethylallyl diphosphate biosynthetic process	9.27E-04
33	GO:0045901: positive regulation of translational elongation	9.27E-04
34	GO:0006452: translational frameshifting	9.27E-04
35	GO:0007163: establishment or maintenance of cell polarity	9.27E-04
36	GO:0016925: protein sumoylation	1.35E-03
37	GO:1904278: positive regulation of wax biosynthetic process	1.51E-03
38	GO:0002181: cytoplasmic translation	1.51E-03
39	GO:0046417: chorismate metabolic process	1.51E-03
40	GO:0045793: positive regulation of cell size	1.51E-03
41	GO:0006760: folic acid-containing compound metabolic process	1.51E-03
42	GO:0034227: tRNA thio-modification	1.51E-03
43	GO:0010452: histone H3-K36 methylation	1.51E-03
44	GO:1902626: assembly of large subunit precursor of preribosome	1.51E-03
45	GO:1901332: negative regulation of lateral root development	2.18E-03
46	GO:0006164: purine nucleotide biosynthetic process	2.18E-03
47	GO:0006168: adenine salvage	2.18E-03
48	GO:0051289: protein homotetramerization	2.18E-03
49	GO:0006882: cellular zinc ion homeostasis	2.18E-03
50	GO:0032877: positive regulation of DNA endoreduplication	2.18E-03
51	GO:0006166: purine ribonucleoside salvage	2.18E-03
52	GO:0006107: oxaloacetate metabolic process	2.18E-03
53	GO:0010971: positive regulation of G2/M transition of mitotic cell cycle	2.18E-03
54	GO:0009113: purine nucleobase biosynthetic process	2.18E-03
55	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.18E-03
56	GO:0006406: mRNA export from nucleus	2.40E-03
57	GO:0006289: nucleotide-excision repair	2.40E-03
58	GO:0006487: protein N-linked glycosylation	2.40E-03
59	GO:0010431: seed maturation	2.91E-03
60	GO:0010109: regulation of photosynthesis	2.93E-03
61	GO:0051781: positive regulation of cell division	2.93E-03
62	GO:0010387: COP9 signalosome assembly	2.93E-03
63	GO:0009926: auxin polar transport	3.17E-03
64	GO:0016226: iron-sulfur cluster assembly	3.19E-03
65	GO:0044209: AMP salvage	3.76E-03
66	GO:0030041: actin filament polymerization	3.76E-03
67	GO:0042147: retrograde transport, endosome to Golgi	4.10E-03
68	GO:0000413: protein peptidyl-prolyl isomerization	4.44E-03
69	GO:0015991: ATP hydrolysis coupled proton transport	4.44E-03
70	GO:0006014: D-ribose metabolic process	4.65E-03
71	GO:0051568: histone H3-K4 methylation	4.65E-03
72	GO:0006555: methionine metabolic process	4.65E-03
73	GO:0043248: proteasome assembly	4.65E-03
74	GO:0006662: glycerol ether metabolic process	4.78E-03
75	GO:0046686: response to cadmium ion	5.02E-03
76	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	5.60E-03
77	GO:0009554: megasporogenesis	5.60E-03
78	GO:0009955: adaxial/abaxial pattern specification	5.60E-03
79	GO:0019509: L-methionine salvage from methylthioadenosine	5.60E-03
80	GO:0009612: response to mechanical stimulus	5.60E-03
81	GO:0080156: mitochondrial mRNA modification	5.91E-03
82	GO:0032880: regulation of protein localization	6.62E-03
83	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	6.62E-03
84	GO:0000338: protein deneddylation	6.62E-03
85	GO:0010090: trichome morphogenesis	6.74E-03
86	GO:0006914: autophagy	7.18E-03
87	GO:0010286: heat acclimation	7.62E-03
88	GO:0009690: cytokinin metabolic process	7.71E-03
89	GO:0006506: GPI anchor biosynthetic process	7.71E-03
90	GO:0050821: protein stabilization	7.71E-03
91	GO:0045010: actin nucleation	7.71E-03
92	GO:0015031: protein transport	8.67E-03
93	GO:0000398: mRNA splicing, via spliceosome	8.75E-03
94	GO:0010100: negative regulation of photomorphogenesis	8.84E-03
95	GO:0006526: arginine biosynthetic process	8.84E-03
96	GO:0009808: lignin metabolic process	8.84E-03
97	GO:0010093: specification of floral organ identity	8.84E-03
98	GO:0001510: RNA methylation	8.84E-03
99	GO:0006189: 'de novo' IMP biosynthetic process	1.00E-02
100	GO:0048589: developmental growth	1.00E-02
101	GO:0000902: cell morphogenesis	1.00E-02
102	GO:0009245: lipid A biosynthetic process	1.00E-02
103	GO:0071577: zinc II ion transmembrane transport	1.13E-02
104	GO:0010267: production of ta-siRNAs involved in RNA interference	1.13E-02
105	GO:0010449: root meristem growth	1.13E-02
106	GO:0000103: sulfate assimilation	1.26E-02
107	GO:0009793: embryo development ending in seed dormancy	1.26E-02
108	GO:0043069: negative regulation of programmed cell death	1.26E-02
109	GO:0016441: posttranscriptional gene silencing	1.26E-02
110	GO:0006413: translational initiation	1.34E-02
111	GO:0015770: sucrose transport	1.40E-02
112	GO:0048229: gametophyte development	1.40E-02
113	GO:0016485: protein processing	1.40E-02
114	GO:0010015: root morphogenesis	1.40E-02
115	GO:0006913: nucleocytoplasmic transport	1.40E-02
116	GO:0072593: reactive oxygen species metabolic process	1.40E-02
117	GO:0009073: aromatic amino acid family biosynthetic process	1.40E-02
118	GO:0034599: cellular response to oxidative stress	1.49E-02
119	GO:0010102: lateral root morphogenesis	1.69E-02
120	GO:0010628: positive regulation of gene expression	1.69E-02
121	GO:0006626: protein targeting to mitochondrion	1.69E-02
122	GO:0006807: nitrogen compound metabolic process	1.69E-02
123	GO:0006108: malate metabolic process	1.69E-02
124	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.69E-02
125	GO:0008380: RNA splicing	1.83E-02
126	GO:0006446: regulation of translational initiation	1.84E-02
127	GO:0048467: gynoecium development	1.84E-02
128	GO:0008283: cell proliferation	1.84E-02
129	GO:0002237: response to molecule of bacterial origin	1.84E-02
130	GO:0007034: vacuolar transport	1.84E-02
131	GO:0010020: chloroplast fission	1.84E-02
132	GO:0010039: response to iron ion	1.99E-02
133	GO:0007030: Golgi organization	1.99E-02
134	GO:0009965: leaf morphogenesis	2.07E-02
135	GO:0034976: response to endoplasmic reticulum stress	2.15E-02
136	GO:0006071: glycerol metabolic process	2.15E-02
137	GO:0009116: nucleoside metabolic process	2.32E-02
138	GO:0051302: regulation of cell division	2.49E-02
139	GO:0008299: isoprenoid biosynthetic process	2.49E-02
140	GO:0051603: proteolysis involved in cellular protein catabolic process	2.57E-02
141	GO:0015992: proton transport	2.66E-02
142	GO:0051260: protein homooligomerization	2.66E-02
143	GO:0061077: chaperone-mediated protein folding	2.66E-02
144	GO:0007005: mitochondrion organization	2.84E-02
145	GO:0019722: calcium-mediated signaling	3.20E-02
146	GO:0010089: xylem development	3.20E-02
147	GO:0016569: covalent chromatin modification	3.33E-02
148	GO:0016192: vesicle-mediated transport	3.54E-02
149	GO:0034220: ion transmembrane transport	3.58E-02
150	GO:0006606: protein import into nucleus	3.58E-02
151	GO:0051726: regulation of cell cycle	3.75E-02
152	GO:0061025: membrane fusion	3.98E-02
153	GO:0009556: microsporogenesis	4.18E-02
154	GO:0006623: protein targeting to vacuole	4.18E-02
155	GO:0010183: pollen tube guidance	4.18E-02
156	GO:0006886: intracellular protein transport	4.32E-02
157	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	4.39E-02
158	GO:0009630: gravitropism	4.60E-02
159	GO:0031047: gene silencing by RNA	4.60E-02
160	GO:0030163: protein catabolic process	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0051903: S-(hydroxymethyl)glutathione dehydrogenase activity	0.00E+00
2	GO:0008777: acetylornithine deacetylase activity	0.00E+00
3	GO:0033971: hydroxyisourate hydrolase activity	0.00E+00
4	GO:0051997: 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity	0.00E+00
5	GO:0080007: S-nitrosoglutathione reductase activity	0.00E+00
6	GO:0050152: omega-amidase activity	0.00E+00
7	GO:0004637: phosphoribosylamine-glycine ligase activity	0.00E+00
8	GO:0003735: structural constituent of ribosome	1.41E-20
9	GO:0004298: threonine-type endopeptidase activity	1.33E-08
10	GO:0008233: peptidase activity	1.59E-05
11	GO:0001055: RNA polymerase II activity	4.94E-05
12	GO:0004129: cytochrome-c oxidase activity	8.03E-05
13	GO:0001054: RNA polymerase I activity	8.03E-05
14	GO:0001056: RNA polymerase III activity	9.94E-05
15	GO:0004576: oligosaccharyl transferase activity	1.07E-04
16	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.66E-04
17	GO:0031386: protein tag	1.66E-04
18	GO:0003729: mRNA binding	1.81E-04
19	GO:0030611: arsenate reductase activity	4.29E-04
20	GO:0004452: isopentenyl-diphosphate delta-isomerase activity	4.29E-04
21	GO:0043022: ribosome binding	5.13E-04
22	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.70E-04
23	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	8.35E-04
24	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	8.98E-04
25	GO:0018708: thiol S-methyltransferase activity	9.27E-04
26	GO:1990585: hydroxyproline O-arabinosyltransferase activity	9.27E-04
27	GO:0004106: chorismate mutase activity	9.27E-04
28	GO:0004826: phenylalanine-tRNA ligase activity	9.27E-04
29	GO:0008237: metallopeptidase activity	1.05E-03
30	GO:0008794: arsenate reductase (glutaredoxin) activity	1.18E-03
31	GO:0015035: protein disulfide oxidoreductase activity	1.49E-03
32	GO:0032403: protein complex binding	1.51E-03
33	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	1.51E-03
34	GO:0004089: carbonate dehydratase activity	1.54E-03
35	GO:0008097: 5S rRNA binding	2.18E-03
36	GO:0000254: C-4 methylsterol oxidase activity	2.18E-03
37	GO:0003999: adenine phosphoribosyltransferase activity	2.18E-03
38	GO:0003746: translation elongation factor activity	2.29E-03
39	GO:0043130: ubiquitin binding	2.40E-03
40	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	2.93E-03
41	GO:0010011: auxin binding	2.93E-03
42	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	2.93E-03
43	GO:0070628: proteasome binding	2.93E-03
44	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	2.93E-03
45	GO:0047134: protein-disulfide reductase activity	4.10E-03
46	GO:0031593: polyubiquitin binding	4.65E-03
47	GO:0031177: phosphopantetheine binding	4.65E-03
48	GO:0051117: ATPase binding	4.65E-03
49	GO:0004791: thioredoxin-disulfide reductase activity	5.14E-03
50	GO:0004747: ribokinase activity	5.60E-03
51	GO:0051920: peroxiredoxin activity	5.60E-03
52	GO:0000035: acyl binding	5.60E-03
53	GO:0008137: NADH dehydrogenase (ubiquinone) activity	5.91E-03
54	GO:0008320: protein transmembrane transporter activity	6.62E-03
55	GO:0008235: metalloexopeptidase activity	6.62E-03
56	GO:0042162: telomeric DNA binding	6.62E-03
57	GO:0008121: ubiquinol-cytochrome-c reductase activity	6.62E-03
58	GO:0005515: protein binding	7.69E-03
59	GO:0016209: antioxidant activity	7.71E-03
60	GO:0035064: methylated histone binding	7.71E-03
61	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	7.71E-03
62	GO:0008173: RNA methyltransferase activity	8.84E-03
63	GO:0019843: rRNA binding	9.72E-03
64	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.00E-02
65	GO:0047617: acyl-CoA hydrolase activity	1.13E-02
66	GO:0045309: protein phosphorylated amino acid binding	1.13E-02
67	GO:0003723: RNA binding	1.16E-02
68	GO:0008047: enzyme activator activity	1.26E-02
69	GO:0046961: proton-transporting ATPase activity, rotational mechanism	1.40E-02
70	GO:0008327: methyl-CpG binding	1.40E-02
71	GO:0004177: aminopeptidase activity	1.40E-02
72	GO:0008515: sucrose transmembrane transporter activity	1.40E-02
73	GO:0019904: protein domain specific binding	1.40E-02
74	GO:0003697: single-stranded DNA binding	1.43E-02
75	GO:0000049: tRNA binding	1.54E-02
76	GO:0004022: alcohol dehydrogenase (NAD) activity	1.69E-02
77	GO:0003743: translation initiation factor activity	1.79E-02
78	GO:0051119: sugar transmembrane transporter activity	1.99E-02
79	GO:0003712: transcription cofactor activity	1.99E-02
80	GO:0004725: protein tyrosine phosphatase activity	2.15E-02
81	GO:0003714: transcription corepressor activity	2.32E-02
82	GO:0005385: zinc ion transmembrane transporter activity	2.32E-02
83	GO:0005528: FK506 binding	2.32E-02
84	GO:0046872: metal ion binding	2.38E-02
85	GO:0043424: protein histidine kinase binding	2.49E-02
86	GO:0003756: protein disulfide isomerase activity	3.20E-02
87	GO:0000166: nucleotide binding	3.73E-02
88	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	3.78E-02
89	GO:0046873: metal ion transmembrane transporter activity	3.78E-02
90	GO:0008536: Ran GTPase binding	3.78E-02
91	GO:0004872: receptor activity	4.18E-02

Rank	GO Term	Adjusted P value
1	GO:0016469: proton-transporting two-sector ATPase complex	0.00E+00
2	GO:0043186: P granule	0.00E+00
3	GO:0005675: holo TFIIH complex	0.00E+00
4	GO:0097361: CIA complex	0.00E+00
5	GO:0005840: ribosome	3.85E-15
6	GO:0022626: cytosolic ribosome	4.85E-15
7	GO:0022625: cytosolic large ribosomal subunit	3.18E-13
8	GO:0005829: cytosol	8.38E-13
9	GO:0000502: proteasome complex	1.94E-09
10	GO:0005737: cytoplasm	1.06E-08
11	GO:0005839: proteasome core complex	1.33E-08
12	GO:0022627: cytosolic small ribosomal subunit	2.91E-08
13	GO:0005747: mitochondrial respiratory chain complex I	1.68E-06
14	GO:0005774: vacuolar membrane	2.21E-06
15	GO:0005665: DNA-directed RNA polymerase II, core complex	3.29E-06
16	GO:0005730: nucleolus	3.90E-06
17	GO:0000419: DNA-directed RNA polymerase V complex	9.70E-06
18	GO:0045271: respiratory chain complex I	1.51E-05
19	GO:0019773: proteasome core complex, alpha-subunit complex	2.73E-05
20	GO:0005773: vacuole	2.92E-05
21	GO:0015934: large ribosomal subunit	3.02E-05
22	GO:0005736: DNA-directed RNA polymerase I complex	3.73E-05
23	GO:0005732: small nucleolar ribonucleoprotein complex	4.19E-05
24	GO:0005666: DNA-directed RNA polymerase III complex	4.94E-05
25	GO:0005783: endoplasmic reticulum	1.22E-04
26	GO:0008250: oligosaccharyltransferase complex	1.66E-04
27	GO:0005771: multivesicular body	2.37E-04
28	GO:0030904: retromer complex	2.37E-04
29	GO:0031234: extrinsic component of cytoplasmic side of plasma membrane	4.29E-04
30	GO:0019774: proteasome core complex, beta-subunit complex	4.29E-04
31	GO:0000421: autophagosome membrane	5.13E-04
32	GO:0031966: mitochondrial membrane	7.50E-04
33	GO:0016020: membrane	7.53E-04
34	GO:0071011: precatalytic spliceosome	8.83E-04
35	GO:0005697: telomerase holoenzyme complex	9.27E-04
36	GO:0035145: exon-exon junction complex	9.27E-04
37	GO:0000418: DNA-directed RNA polymerase IV complex	1.03E-03
38	GO:0071013: catalytic step 2 spliceosome	1.18E-03
39	GO:0034719: SMN-Sm protein complex	1.51E-03
40	GO:0005838: proteasome regulatory particle	1.51E-03
41	GO:0005853: eukaryotic translation elongation factor 1 complex	1.51E-03
42	GO:0000439: core TFIIH complex	1.51E-03
43	GO:0019013: viral nucleocapsid	1.54E-03
44	GO:0033180: proton-transporting V-type ATPase, V1 domain	2.18E-03
45	GO:1990726: Lsm1-7-Pat1 complex	2.18E-03
46	GO:0005758: mitochondrial intermembrane space	2.40E-03
47	GO:0005794: Golgi apparatus	2.84E-03
48	GO:0015935: small ribosomal subunit	2.91E-03
49	GO:0000445: THO complex part of transcription export complex	2.93E-03
50	GO:0016471: vacuolar proton-transporting V-type ATPase complex	2.93E-03
51	GO:0016593: Cdc73/Paf1 complex	2.93E-03
52	GO:0005682: U5 snRNP	2.93E-03
53	GO:0031410: cytoplasmic vesicle	3.19E-03
54	GO:0005687: U4 snRNP	3.76E-03
55	GO:0097526: spliceosomal tri-snRNP complex	3.76E-03
56	GO:0005746: mitochondrial respiratory chain	3.76E-03
57	GO:0032588: trans-Golgi network membrane	4.65E-03
58	GO:0031209: SCAR complex	4.65E-03
59	GO:0009507: chloroplast	5.59E-03
60	GO:0005801: cis-Golgi network	5.60E-03
61	GO:0005689: U12-type spliceosomal complex	5.60E-03
62	GO:0000347: THO complex	6.62E-03
63	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	6.62E-03
64	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	7.36E-03
65	GO:0071004: U2-type prespliceosome	7.71E-03
66	GO:0005688: U6 snRNP	7.71E-03
67	GO:0046540: U4/U6 x U5 tri-snRNP complex	8.84E-03
68	GO:0005788: endoplasmic reticulum lumen	9.07E-03
69	GO:0005763: mitochondrial small ribosomal subunit	1.00E-02
70	GO:0008180: COP9 signalosome	1.00E-02
71	GO:0005685: U1 snRNP	1.00E-02
72	GO:0005686: U2 snRNP	1.26E-02
73	GO:0005740: mitochondrial envelope	1.26E-02
74	GO:0005789: endoplasmic reticulum membrane	1.28E-02
75	GO:0005759: mitochondrial matrix	1.30E-02
76	GO:0005852: eukaryotic translation initiation factor 3 complex	1.40E-02
77	GO:0008541: proteasome regulatory particle, lid subcomplex	1.40E-02
78	GO:0009506: plasmodesma	1.44E-02
79	GO:0009508: plastid chromosome	1.69E-02
80	GO:0031902: late endosome membrane	1.70E-02
81	GO:0005750: mitochondrial respiratory chain complex III	1.84E-02
82	GO:0005769: early endosome	2.15E-02
83	GO:0005739: mitochondrion	2.39E-02
84	GO:0070469: respiratory chain	2.49E-02
85	GO:0005635: nuclear envelope	2.66E-02
86	GO:0005681: spliceosomal complex	2.94E-02
87	GO:0005834: heterotrimeric G-protein complex	3.13E-02
88	GO:0005874: microtubule	3.19E-02
89	GO:0005622: intracellular	3.22E-02
90	GO:0071944: cell periphery	4.81E-02