Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G05590

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009106: lipoate metabolic process0.00E+00
2GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA0.00E+00
3GO:0009092: homoserine metabolic process0.00E+00
4GO:0009946: proximal/distal axis specification0.00E+00
5GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
6GO:0009249: protein lipoylation0.00E+00
7GO:0033206: meiotic cytokinesis2.53E-05
8GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation6.44E-05
9GO:0043039: tRNA aminoacylation6.44E-05
10GO:0009451: RNA modification1.02E-04
11GO:0010338: leaf formation1.13E-04
12GO:0006808: regulation of nitrogen utilization2.30E-04
13GO:0045088: regulation of innate immune response2.30E-04
14GO:0009107: lipoate biosynthetic process2.95E-04
15GO:0000741: karyogamy3.65E-04
16GO:0042793: transcription from plastid promoter3.65E-04
17GO:0009959: negative gravitropism3.65E-04
18GO:2000033: regulation of seed dormancy process4.36E-04
19GO:0009088: threonine biosynthetic process4.36E-04
20GO:0042255: ribosome assembly5.89E-04
21GO:0009938: negative regulation of gibberellic acid mediated signaling pathway5.89E-04
22GO:0010928: regulation of auxin mediated signaling pathway5.89E-04
23GO:0010233: phloem transport6.69E-04
24GO:0022900: electron transport chain6.69E-04
25GO:0009086: methionine biosynthetic process8.38E-04
26GO:0008356: asymmetric cell division8.38E-04
27GO:0045036: protein targeting to chloroplast9.24E-04
28GO:0080188: RNA-directed DNA methylation1.40E-03
29GO:0009739: response to gibberellin1.45E-03
30GO:0009863: salicylic acid mediated signaling pathway1.61E-03
31GO:0010187: negative regulation of seed germination1.61E-03
32GO:0009944: polarity specification of adaxial/abaxial axis1.61E-03
33GO:2000377: regulation of reactive oxygen species metabolic process1.61E-03
34GO:0006418: tRNA aminoacylation for protein translation1.72E-03
35GO:0006306: DNA methylation1.83E-03
36GO:0009958: positive gravitropism2.55E-03
37GO:0010197: polar nucleus fusion2.55E-03
38GO:0031047: gene silencing by RNA3.07E-03
39GO:0032502: developmental process3.07E-03
40GO:0007264: small GTPase mediated signal transduction3.07E-03
41GO:0009639: response to red or far red light3.34E-03
42GO:0009615: response to virus3.77E-03
43GO:0016126: sterol biosynthetic process3.77E-03
44GO:0010029: regulation of seed germination3.91E-03
45GO:0010218: response to far red light4.83E-03
46GO:0009867: jasmonic acid mediated signaling pathway5.31E-03
47GO:0009965: leaf morphogenesis6.85E-03
48GO:0042538: hyperosmotic salinity response7.40E-03
49GO:0009651: response to salt stress9.33E-03
50GO:0009620: response to fungus9.34E-03
51GO:0009740: gibberellic acid mediated signaling pathway9.54E-03
52GO:0006396: RNA processing1.02E-02
53GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process1.58E-02
54GO:0008380: RNA splicing1.66E-02
55GO:0009617: response to bacterium1.66E-02
56GO:0005975: carbohydrate metabolic process1.97E-02
57GO:0009658: chloroplast organization1.99E-02
58GO:0042254: ribosome biogenesis2.02E-02
59GO:0006970: response to osmotic stress2.10E-02
60GO:0009723: response to ethylene2.21E-02
61GO:0044550: secondary metabolite biosynthetic process2.47E-02
62GO:0045892: negative regulation of transcription, DNA-templated2.67E-02
63GO:0009737: response to abscisic acid2.76E-02
64GO:0032259: methylation2.98E-02
65GO:0009751: response to salicylic acid3.04E-02
66GO:0006397: mRNA processing3.16E-02
67GO:0009753: response to jasmonic acid3.23E-02
68GO:0006357: regulation of transcription from RNA polymerase II promoter3.75E-02
69GO:0009734: auxin-activated signaling pathway3.92E-02
70GO:0016567: protein ubiquitination3.94E-02
71GO:0009908: flower development4.30E-02
RankGO TermAdjusted P value
1GO:0033819: lipoyl(octanoyl) transferase activity0.00E+00
2GO:0004831: tyrosine-tRNA ligase activity2.53E-05
3GO:0004413: homoserine kinase activity2.53E-05
4GO:0017118: lipoyltransferase activity6.44E-05
5GO:0016415: octanoyltransferase activity6.44E-05
6GO:0019003: GDP binding1.13E-04
7GO:0000254: C-4 methylsterol oxidase activity1.69E-04
8GO:0009044: xylan 1,4-beta-xylosidase activity2.30E-04
9GO:0004519: endonuclease activity4.57E-04
10GO:0004525: ribonuclease III activity5.89E-04
11GO:0000989: transcription factor activity, transcription factor binding7.52E-04
12GO:0019843: rRNA binding9.61E-04
13GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.30E-03
14GO:0003727: single-stranded RNA binding2.18E-03
15GO:0004812: aminoacyl-tRNA ligase activity2.30E-03
16GO:0004518: nuclease activity3.07E-03
17GO:0042803: protein homodimerization activity3.07E-03
18GO:0003746: translation elongation factor activity5.31E-03
19GO:0051537: 2 iron, 2 sulfur cluster binding6.67E-03
20GO:0003723: RNA binding6.74E-03
21GO:0008234: cysteine-type peptidase activity8.35E-03
22GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds8.41E-03
23GO:0008026: ATP-dependent helicase activity1.04E-02
24GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.19E-02
25GO:0005506: iron ion binding1.27E-02
26GO:0008194: UDP-glycosyltransferase activity1.58E-02
27GO:0003729: mRNA binding1.93E-02
28GO:0008168: methyltransferase activity1.94E-02
29GO:0004497: monooxygenase activity2.32E-02
30GO:0061630: ubiquitin protein ligase activity2.41E-02
31GO:0003735: structural constituent of ribosome2.58E-02
32GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting2.64E-02
33GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen2.79E-02
34GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding2.85E-02
35GO:0003924: GTPase activity3.07E-02
36GO:0009055: electron carrier activity3.23E-02
37GO:0000166: nucleotide binding4.62E-02
RankGO TermAdjusted P value
1GO:0030427: site of polarized growth0.00E+00
2GO:0031011: Ino80 complex2.95E-04
3GO:0000793: condensed chromosome3.65E-04
4GO:0009508: plastid chromosome1.20E-03
5GO:0005578: proteinaceous extracellular matrix1.20E-03
6GO:0000419: DNA-directed RNA polymerase V complex1.50E-03
7GO:0015935: small ribosomal subunit1.83E-03
8GO:0009295: nucleoid3.48E-03
9GO:0005819: spindle5.64E-03
10GO:0005623: cell1.19E-02
11GO:0046658: anchored component of plasma membrane1.79E-02
12GO:0009570: chloroplast stroma2.18E-02
13GO:0005730: nucleolus2.19E-02
14GO:0009507: chloroplast2.53E-02
15GO:0043231: intracellular membrane-bounded organelle3.29E-02
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Gene type



Gene DE type