co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G05577

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
2	GO:0030155: regulation of cell adhesion	0.00E+00
3	GO:0090706: specification of plant organ position	0.00E+00
4	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
5	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
6	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
7	GO:0080127: fruit septum development	0.00E+00
8	GO:0090042: tubulin deacetylation	0.00E+00
9	GO:0007172: signal complex assembly	0.00E+00
10	GO:0006114: glycerol biosynthetic process	0.00E+00
11	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
12	GO:0010966: regulation of phosphate transport	0.00E+00
13	GO:0015979: photosynthesis	8.01E-12
14	GO:0009773: photosynthetic electron transport in photosystem I	3.66E-08
15	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	3.65E-07
16	GO:0042549: photosystem II stabilization	4.50E-06
17	GO:0018026: peptidyl-lysine monomethylation	7.89E-06
18	GO:0010027: thylakoid membrane organization	1.03E-05
19	GO:0061077: chaperone-mediated protein folding	1.75E-05
20	GO:0006109: regulation of carbohydrate metabolic process	1.04E-04
21	GO:0010021: amylopectin biosynthetic process	1.04E-04
22	GO:0010190: cytochrome b6f complex assembly	2.30E-04
23	GO:0042372: phylloquinone biosynthetic process	3.09E-04
24	GO:0000476: maturation of 4.5S rRNA	4.21E-04
25	GO:0000967: rRNA 5'-end processing	4.21E-04
26	GO:0043953: protein transport by the Tat complex	4.21E-04
27	GO:0010480: microsporocyte differentiation	4.21E-04
28	GO:0000481: maturation of 5S rRNA	4.21E-04
29	GO:0042371: vitamin K biosynthetic process	4.21E-04
30	GO:0065002: intracellular protein transmembrane transport	4.21E-04
31	GO:0043686: co-translational protein modification	4.21E-04
32	GO:0043007: maintenance of rDNA	4.21E-04
33	GO:0034337: RNA folding	4.21E-04
34	GO:0010450: inflorescence meristem growth	4.21E-04
35	GO:0010206: photosystem II repair	7.29E-04
36	GO:0045454: cell redox homeostasis	7.46E-04
37	GO:0010205: photoinhibition	8.60E-04
38	GO:0035304: regulation of protein dephosphorylation	9.10E-04
39	GO:0006741: NADP biosynthetic process	9.10E-04
40	GO:0031648: protein destabilization	9.10E-04
41	GO:0006521: regulation of cellular amino acid metabolic process	9.10E-04
42	GO:0030388: fructose 1,6-bisphosphate metabolic process	9.10E-04
43	GO:0080181: lateral root branching	9.10E-04
44	GO:0034470: ncRNA processing	9.10E-04
45	GO:0019684: photosynthesis, light reaction	1.15E-03
46	GO:0043085: positive regulation of catalytic activity	1.15E-03
47	GO:0009409: response to cold	1.18E-03
48	GO:0015995: chlorophyll biosynthetic process	1.43E-03
49	GO:0048281: inflorescence morphogenesis	1.48E-03
50	GO:0006000: fructose metabolic process	1.48E-03
51	GO:0006954: inflammatory response	1.48E-03
52	GO:0090391: granum assembly	1.48E-03
53	GO:0009405: pathogenesis	1.48E-03
54	GO:0005977: glycogen metabolic process	1.48E-03
55	GO:0045165: cell fate commitment	1.48E-03
56	GO:0019674: NAD metabolic process	1.48E-03
57	GO:0016311: dephosphorylation	1.53E-03
58	GO:0018298: protein-chromophore linkage	1.63E-03
59	GO:0009934: regulation of meristem structural organization	1.68E-03
60	GO:0010218: response to far red light	1.85E-03
61	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.14E-03
62	GO:1901332: negative regulation of lateral root development	2.14E-03
63	GO:0010148: transpiration	2.14E-03
64	GO:0019363: pyridine nucleotide biosynthetic process	2.14E-03
65	GO:0006020: inositol metabolic process	2.14E-03
66	GO:0009944: polarity specification of adaxial/abaxial axis	2.33E-03
67	GO:0009768: photosynthesis, light harvesting in photosystem I	2.58E-03
68	GO:0019464: glycine decarboxylation via glycine cleavage system	2.88E-03
69	GO:0009765: photosynthesis, light harvesting	2.88E-03
70	GO:0015994: chlorophyll metabolic process	2.88E-03
71	GO:0022622: root system development	2.88E-03
72	GO:0006546: glycine catabolic process	2.88E-03
73	GO:0006552: leucine catabolic process	2.88E-03
74	GO:0006021: inositol biosynthetic process	2.88E-03
75	GO:0006808: regulation of nitrogen utilization	2.88E-03
76	GO:0015976: carbon utilization	2.88E-03
77	GO:0010114: response to red light	3.06E-03
78	GO:0019748: secondary metabolic process	3.10E-03
79	GO:0010158: abaxial cell fate specification	3.68E-03
80	GO:0006465: signal peptide processing	3.68E-03
81	GO:0010236: plastoquinone biosynthetic process	3.68E-03
82	GO:0031365: N-terminal protein amino acid modification	3.68E-03
83	GO:1902183: regulation of shoot apical meristem development	3.68E-03
84	GO:0006810: transport	4.08E-03
85	GO:0042793: transcription from plastid promoter	4.56E-03
86	GO:0003006: developmental process involved in reproduction	4.56E-03
87	GO:0046855: inositol phosphate dephosphorylation	4.56E-03
88	GO:0006662: glycerol ether metabolic process	4.65E-03
89	GO:0019252: starch biosynthetic process	5.36E-03
90	GO:0042026: protein refolding	5.49E-03
91	GO:0006458: 'de novo' protein folding	5.49E-03
92	GO:0030488: tRNA methylation	5.49E-03
93	GO:0010583: response to cyclopentenone	6.14E-03
94	GO:0032502: developmental process	6.14E-03
95	GO:0009772: photosynthetic electron transport in photosystem II	6.49E-03
96	GO:0070370: cellular heat acclimation	6.49E-03
97	GO:0048437: floral organ development	6.49E-03
98	GO:0010196: nonphotochemical quenching	6.49E-03
99	GO:1900057: positive regulation of leaf senescence	6.49E-03
100	GO:0009645: response to low light intensity stimulus	6.49E-03
101	GO:0009769: photosynthesis, light harvesting in photosystem II	6.49E-03
102	GO:0022904: respiratory electron transport chain	6.49E-03
103	GO:0010103: stomatal complex morphogenesis	6.49E-03
104	GO:0032880: regulation of protein localization	6.49E-03
105	GO:0030091: protein repair	7.55E-03
106	GO:0005978: glycogen biosynthetic process	7.55E-03
107	GO:0009642: response to light intensity	7.55E-03
108	GO:0032508: DNA duplex unwinding	7.55E-03
109	GO:0000105: histidine biosynthetic process	7.55E-03
110	GO:0009231: riboflavin biosynthetic process	7.55E-03
111	GO:0016559: peroxisome fission	7.55E-03
112	GO:0006002: fructose 6-phosphate metabolic process	8.67E-03
113	GO:0001558: regulation of cell growth	8.67E-03
114	GO:0017004: cytochrome complex assembly	8.67E-03
115	GO:0010093: specification of floral organ identity	8.67E-03
116	GO:0051865: protein autoubiquitination	9.85E-03
117	GO:2000024: regulation of leaf development	9.85E-03
118	GO:0048507: meristem development	9.85E-03
119	GO:0006779: porphyrin-containing compound biosynthetic process	1.11E-02
120	GO:0005982: starch metabolic process	1.11E-02
121	GO:0006782: protoporphyrinogen IX biosynthetic process	1.24E-02
122	GO:0048829: root cap development	1.24E-02
123	GO:0009631: cold acclimation	1.26E-02
124	GO:0009089: lysine biosynthetic process via diaminopimelate	1.37E-02
125	GO:0072593: reactive oxygen species metabolic process	1.37E-02
126	GO:0009073: aromatic amino acid family biosynthetic process	1.37E-02
127	GO:0048229: gametophyte development	1.37E-02
128	GO:0009637: response to blue light	1.38E-02
129	GO:0034599: cellular response to oxidative stress	1.45E-02
130	GO:0006790: sulfur compound metabolic process	1.51E-02
131	GO:0005983: starch catabolic process	1.51E-02
132	GO:0010582: floral meristem determinacy	1.51E-02
133	GO:0071365: cellular response to auxin stimulus	1.51E-02
134	GO:2000012: regulation of auxin polar transport	1.65E-02
135	GO:0010628: positive regulation of gene expression	1.65E-02
136	GO:0018107: peptidyl-threonine phosphorylation	1.65E-02
137	GO:0010075: regulation of meristem growth	1.65E-02
138	GO:0006094: gluconeogenesis	1.65E-02
139	GO:0005986: sucrose biosynthetic process	1.65E-02
140	GO:0006302: double-strand break repair	1.80E-02
141	GO:0048467: gynoecium development	1.80E-02
142	GO:0010207: photosystem II assembly	1.80E-02
143	GO:0010020: chloroplast fission	1.80E-02
144	GO:0009933: meristem structural organization	1.80E-02
145	GO:0019253: reductive pentose-phosphate cycle	1.80E-02
146	GO:0009266: response to temperature stimulus	1.80E-02
147	GO:0019853: L-ascorbic acid biosynthetic process	1.95E-02
148	GO:0005985: sucrose metabolic process	1.95E-02
149	GO:0010030: positive regulation of seed germination	1.95E-02
150	GO:0046854: phosphatidylinositol phosphorylation	1.95E-02
151	GO:0000162: tryptophan biosynthetic process	2.11E-02
152	GO:0006636: unsaturated fatty acid biosynthetic process	2.11E-02
153	GO:0006289: nucleotide-excision repair	2.27E-02
154	GO:0016575: histone deacetylation	2.43E-02
155	GO:0051302: regulation of cell division	2.43E-02
156	GO:0019915: lipid storage	2.60E-02
157	GO:0009269: response to desiccation	2.60E-02
158	GO:0048278: vesicle docking	2.60E-02
159	GO:0051321: meiotic cell cycle	2.60E-02
160	GO:0048511: rhythmic process	2.60E-02
161	GO:0009909: regulation of flower development	2.67E-02
162	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.78E-02
163	GO:0043086: negative regulation of catalytic activity	2.86E-02
164	GO:0009686: gibberellin biosynthetic process	2.96E-02
165	GO:0071369: cellular response to ethylene stimulus	2.96E-02
166	GO:0001944: vasculature development	2.96E-02
167	GO:0006012: galactose metabolic process	2.96E-02
168	GO:0009735: response to cytokinin	3.14E-02
169	GO:0009561: megagametogenesis	3.14E-02
170	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.32E-02
171	GO:0070417: cellular response to cold	3.32E-02
172	GO:0008284: positive regulation of cell proliferation	3.32E-02
173	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.35E-02
174	GO:0055114: oxidation-reduction process	3.37E-02
175	GO:0048653: anther development	3.51E-02
176	GO:0042631: cellular response to water deprivation	3.51E-02
177	GO:0009958: positive gravitropism	3.70E-02
178	GO:0010154: fruit development	3.70E-02
179	GO:0006979: response to oxidative stress	3.85E-02
180	GO:0061025: membrane fusion	3.90E-02
181	GO:0042752: regulation of circadian rhythm	3.90E-02
182	GO:0009646: response to absence of light	3.90E-02
183	GO:0055072: iron ion homeostasis	4.10E-02
184	GO:0071554: cell wall organization or biogenesis	4.30E-02
185	GO:0006635: fatty acid beta-oxidation	4.30E-02
186	GO:1901657: glycosyl compound metabolic process	4.72E-02
187	GO:0009567: double fertilization forming a zygote and endosperm	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
2	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
3	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
4	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
5	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
6	GO:0051721: protein phosphatase 2A binding	0.00E+00
7	GO:0042903: tubulin deacetylase activity	0.00E+00
8	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
9	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
10	GO:0043014: alpha-tubulin binding	0.00E+00
11	GO:0048039: ubiquinone binding	0.00E+00
12	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
13	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
14	GO:0009899: ent-kaurene synthase activity	0.00E+00
15	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
16	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
17	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
18	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.05E-06
19	GO:0016279: protein-lysine N-methyltransferase activity	1.04E-04
20	GO:0005528: FK506 binding	2.23E-04
21	GO:0003985: acetyl-CoA C-acetyltransferase activity	4.21E-04
22	GO:0050308: sugar-phosphatase activity	4.21E-04
23	GO:0010242: oxygen evolving activity	4.21E-04
24	GO:0019203: carbohydrate phosphatase activity	4.21E-04
25	GO:0042586: peptide deformylase activity	4.21E-04
26	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	4.21E-04
27	GO:0042736: NADH kinase activity	4.21E-04
28	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	4.21E-04
29	GO:0004033: aldo-keto reductase (NADP) activity	4.99E-04
30	GO:0043621: protein self-association	5.71E-04
31	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.42E-04
32	GO:0048038: quinone binding	7.36E-04
33	GO:0052832: inositol monophosphate 3-phosphatase activity	9.10E-04
34	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	9.10E-04
35	GO:0003844: 1,4-alpha-glucan branching enzyme activity	9.10E-04
36	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	9.10E-04
37	GO:0008934: inositol monophosphate 1-phosphatase activity	9.10E-04
38	GO:0019156: isoamylase activity	9.10E-04
39	GO:0052833: inositol monophosphate 4-phosphatase activity	9.10E-04
40	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	9.10E-04
41	GO:0047746: chlorophyllase activity	9.10E-04
42	GO:0042389: omega-3 fatty acid desaturase activity	9.10E-04
43	GO:0016868: intramolecular transferase activity, phosphotransferases	9.10E-04
44	GO:0009977: proton motive force dependent protein transmembrane transporter activity	9.10E-04
45	GO:0008047: enzyme activator activity	1.00E-03
46	GO:0044183: protein binding involved in protein folding	1.15E-03
47	GO:0009055: electron carrier activity	1.29E-03
48	GO:0051082: unfolded protein binding	1.36E-03
49	GO:0015035: protein disulfide oxidoreductase activity	1.42E-03
50	GO:0043169: cation binding	1.48E-03
51	GO:0005504: fatty acid binding	1.48E-03
52	GO:0017150: tRNA dihydrouridine synthase activity	1.48E-03
53	GO:0090729: toxin activity	1.48E-03
54	GO:0003913: DNA photolyase activity	1.48E-03
55	GO:0031072: heat shock protein binding	1.49E-03
56	GO:0031409: pigment binding	2.10E-03
57	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	2.14E-03
58	GO:0004375: glycine dehydrogenase (decarboxylating) activity	2.14E-03
59	GO:0048487: beta-tubulin binding	2.14E-03
60	GO:0016851: magnesium chelatase activity	2.14E-03
61	GO:0004857: enzyme inhibitor activity	2.33E-03
62	GO:0033612: receptor serine/threonine kinase binding	2.83E-03
63	GO:0004045: aminoacyl-tRNA hydrolase activity	2.88E-03
64	GO:0080032: methyl jasmonate esterase activity	2.88E-03
65	GO:0070628: proteasome binding	2.88E-03
66	GO:0045430: chalcone isomerase activity	2.88E-03
67	GO:0019199: transmembrane receptor protein kinase activity	2.88E-03
68	GO:0042277: peptide binding	2.88E-03
69	GO:0004659: prenyltransferase activity	2.88E-03
70	GO:0047134: protein-disulfide reductase activity	3.99E-03
71	GO:0031593: polyubiquitin binding	4.56E-03
72	GO:0004556: alpha-amylase activity	4.56E-03
73	GO:0016208: AMP binding	4.56E-03
74	GO:2001070: starch binding	4.56E-03
75	GO:0080030: methyl indole-3-acetate esterase activity	4.56E-03
76	GO:0004791: thioredoxin-disulfide reductase activity	5.00E-03
77	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	5.49E-03
78	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	5.49E-03
79	GO:0051920: peroxiredoxin activity	5.49E-03
80	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	5.78E-03
81	GO:0009881: photoreceptor activity	6.49E-03
82	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	6.55E-03
83	GO:0016209: antioxidant activity	7.55E-03
84	GO:0047196: long-chain-alcohol O-fatty-acyltransferase activity	8.67E-03
85	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	8.67E-03
86	GO:0103095: wax ester synthase activity	8.67E-03
87	GO:0003951: NAD+ kinase activity	8.67E-03
88	GO:0008173: RNA methyltransferase activity	8.67E-03
89	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	8.67E-03
90	GO:0016168: chlorophyll binding	8.81E-03
91	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	9.85E-03
92	GO:0030145: manganese ion binding	1.26E-02
93	GO:0003993: acid phosphatase activity	1.45E-02
94	GO:0008378: galactosyltransferase activity	1.51E-02
95	GO:0004565: beta-galactosidase activity	1.65E-02
96	GO:0004089: carbonate dehydratase activity	1.65E-02
97	GO:0004185: serine-type carboxypeptidase activity	1.79E-02
98	GO:0008083: growth factor activity	1.80E-02
99	GO:0008266: poly(U) RNA binding	1.80E-02
100	GO:0042802: identical protein binding	1.92E-02
101	GO:0051537: 2 iron, 2 sulfur cluster binding	1.94E-02
102	GO:0004407: histone deacetylase activity	2.27E-02
103	GO:0043130: ubiquitin binding	2.27E-02
104	GO:0000287: magnesium ion binding	2.40E-02
105	GO:0016787: hydrolase activity	2.44E-02
106	GO:0016788: hydrolase activity, acting on ester bonds	2.51E-02
107	GO:0008408: 3'-5' exonuclease activity	2.60E-02
108	GO:0030570: pectate lyase activity	2.96E-02
109	GO:0003756: protein disulfide isomerase activity	3.14E-02
110	GO:0019843: rRNA binding	4.29E-02
111	GO:0003684: damaged DNA binding	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
3	GO:0009349: riboflavin synthase complex	0.00E+00
4	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
5	GO:0043235: receptor complex	0.00E+00
6	GO:0009507: chloroplast	1.33E-44
7	GO:0009535: chloroplast thylakoid membrane	1.27E-31
8	GO:0009534: chloroplast thylakoid	2.02E-25
9	GO:0009570: chloroplast stroma	2.64E-20
10	GO:0009941: chloroplast envelope	1.82E-11
11	GO:0009579: thylakoid	5.39E-11
12	GO:0009543: chloroplast thylakoid lumen	1.28E-09
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	8.17E-09
14	GO:0009538: photosystem I reaction center	2.63E-07
15	GO:0010287: plastoglobule	3.24E-07
16	GO:0030095: chloroplast photosystem II	5.51E-06
17	GO:0009654: photosystem II oxygen evolving complex	1.43E-05
18	GO:0031977: thylakoid lumen	5.23E-05
19	GO:0019898: extrinsic component of membrane	6.39E-05
20	GO:0000791: euchromatin	4.21E-04
21	GO:0009515: granal stacked thylakoid	4.21E-04
22	GO:0005787: signal peptidase complex	4.21E-04
23	GO:0031361: integral component of thylakoid membrane	4.21E-04
24	GO:0031969: chloroplast membrane	5.19E-04
25	GO:0030870: Mre11 complex	9.10E-04
26	GO:0000427: plastid-encoded plastid RNA polymerase complex	9.10E-04
27	GO:0009295: nucleoid	1.01E-03
28	GO:0010319: stromule	1.01E-03
29	GO:0033281: TAT protein transport complex	1.48E-03
30	GO:0010007: magnesium chelatase complex	1.48E-03
31	GO:0009508: plastid chromosome	1.49E-03
32	GO:0030076: light-harvesting complex	1.89E-03
33	GO:0005960: glycine cleavage complex	2.14E-03
34	GO:0009517: PSII associated light-harvesting complex II	2.88E-03
35	GO:0000795: synaptonemal complex	3.68E-03
36	GO:0009522: photosystem I	5.00E-03
37	GO:0009523: photosystem II	5.36E-03
38	GO:0016272: prefoldin complex	5.49E-03
39	GO:0009533: chloroplast stromal thylakoid	6.49E-03
40	GO:0031305: integral component of mitochondrial inner membrane	7.55E-03
41	GO:0009501: amyloplast	7.55E-03
42	GO:0008180: COP9 signalosome	9.85E-03
43	GO:0055028: cortical microtubule	1.24E-02
44	GO:0005740: mitochondrial envelope	1.24E-02
45	GO:0032040: small-subunit processome	1.51E-02
46	GO:0042651: thylakoid membrane	2.43E-02
47	GO:0015935: small ribosomal subunit	2.60E-02
48	GO:0048046: apoplast	3.25E-02
49	GO:0009504: cell plate	4.10E-02
50	GO:0000785: chromatin	4.51E-02