co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G05070

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0048856: anatomical structure development	0.00E+00
2	GO:0071000: response to magnetism	0.00E+00
3	GO:0046460: neutral lipid biosynthetic process	0.00E+00
4	GO:0016576: histone dephosphorylation	0.00E+00
5	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
6	GO:0006907: pinocytosis	0.00E+00
7	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
8	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
9	GO:0009583: detection of light stimulus	0.00E+00
10	GO:0007037: vacuolar phosphate transport	0.00E+00
11	GO:0034971: histone H3-R17 methylation	1.22E-04
12	GO:0072387: flavin adenine dinucleotide metabolic process	1.22E-04
13	GO:0071454: cellular response to anoxia	1.22E-04
14	GO:0048438: floral whorl development	1.22E-04
15	GO:0034970: histone H3-R2 methylation	1.22E-04
16	GO:0034972: histone H3-R26 methylation	1.22E-04
17	GO:0009451: RNA modification	2.06E-04
18	GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole	2.82E-04
19	GO:0010617: circadian regulation of calcium ion oscillation	2.82E-04
20	GO:0099402: plant organ development	2.82E-04
21	GO:0035335: peptidyl-tyrosine dephosphorylation	2.82E-04
22	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	2.82E-04
23	GO:0080153: negative regulation of reductive pentose-phosphate cycle	2.82E-04
24	GO:0010275: NAD(P)H dehydrogenase complex assembly	2.82E-04
25	GO:0043039: tRNA aminoacylation	2.82E-04
26	GO:0010343: singlet oxygen-mediated programmed cell death	2.82E-04
27	GO:1901529: positive regulation of anion channel activity	2.82E-04
28	GO:0007017: microtubule-based process	4.61E-04
29	GO:1901672: positive regulation of systemic acquired resistance	4.65E-04
30	GO:0045739: positive regulation of DNA repair	4.65E-04
31	GO:1902448: positive regulation of shade avoidance	4.65E-04
32	GO:0033014: tetrapyrrole biosynthetic process	6.66E-04
33	GO:1901332: negative regulation of lateral root development	6.66E-04
34	GO:1902476: chloride transmembrane transport	6.66E-04
35	GO:0009958: positive gravitropism	8.17E-04
36	GO:1902347: response to strigolactone	8.84E-04
37	GO:0042274: ribosomal small subunit biogenesis	8.84E-04
38	GO:0031935: regulation of chromatin silencing	8.84E-04
39	GO:0010117: photoprotection	1.12E-03
40	GO:0046283: anthocyanin-containing compound metabolic process	1.12E-03
41	GO:0016123: xanthophyll biosynthetic process	1.12E-03
42	GO:0009616: virus induced gene silencing	1.12E-03
43	GO:0000741: karyogamy	1.37E-03
44	GO:0060918: auxin transport	1.37E-03
45	GO:0009959: negative gravitropism	1.37E-03
46	GO:0035194: posttranscriptional gene silencing by RNA	1.37E-03
47	GO:1901371: regulation of leaf morphogenesis	1.37E-03
48	GO:0010076: maintenance of floral meristem identity	1.64E-03
49	GO:0017148: negative regulation of translation	1.64E-03
50	GO:0010019: chloroplast-nucleus signaling pathway	1.64E-03
51	GO:0010310: regulation of hydrogen peroxide metabolic process	1.64E-03
52	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.64E-03
53	GO:0034389: lipid particle organization	1.64E-03
54	GO:0006821: chloride transport	1.92E-03
55	GO:0051510: regulation of unidimensional cell growth	1.92E-03
56	GO:1900056: negative regulation of leaf senescence	1.92E-03
57	GO:0080111: DNA demethylation	1.92E-03
58	GO:0009910: negative regulation of flower development	2.13E-03
59	GO:0042255: ribosome assembly	2.22E-03
60	GO:0006353: DNA-templated transcription, termination	2.22E-03
61	GO:0009704: de-etiolation	2.22E-03
62	GO:0010928: regulation of auxin mediated signaling pathway	2.22E-03
63	GO:0009658: chloroplast organization	2.53E-03
64	GO:0022900: electron transport chain	2.54E-03
65	GO:0006783: heme biosynthetic process	2.87E-03
66	GO:0019432: triglyceride biosynthetic process	2.87E-03
67	GO:0009744: response to sucrose	2.99E-03
68	GO:1900426: positive regulation of defense response to bacterium	3.21E-03
69	GO:0009638: phototropism	3.21E-03
70	GO:0006779: porphyrin-containing compound biosynthetic process	3.21E-03
71	GO:0010380: regulation of chlorophyll biosynthetic process	3.21E-03
72	GO:0045036: protein targeting to chloroplast	3.57E-03
73	GO:0043085: positive regulation of catalytic activity	3.94E-03
74	GO:0045037: protein import into chloroplast stroma	4.32E-03
75	GO:0010582: floral meristem determinacy	4.32E-03
76	GO:0010075: regulation of meristem growth	4.71E-03
77	GO:0009725: response to hormone	4.71E-03
78	GO:0009767: photosynthetic electron transport chain	4.71E-03
79	GO:0009785: blue light signaling pathway	4.71E-03
80	GO:0019253: reductive pentose-phosphate cycle	5.12E-03
81	GO:0010207: photosystem II assembly	5.12E-03
82	GO:0009266: response to temperature stimulus	5.12E-03
83	GO:0034605: cellular response to heat	5.12E-03
84	GO:0006071: glycerol metabolic process	5.98E-03
85	GO:0000162: tryptophan biosynthetic process	5.98E-03
86	GO:0006289: nucleotide-excision repair	6.42E-03
87	GO:2000377: regulation of reactive oxygen species metabolic process	6.42E-03
88	GO:0006418: tRNA aminoacylation for protein translation	6.87E-03
89	GO:0070417: cellular response to cold	9.31E-03
90	GO:0008033: tRNA processing	9.83E-03
91	GO:0010051: xylem and phloem pattern formation	9.83E-03
92	GO:0010087: phloem or xylem histogenesis	9.83E-03
93	GO:0010118: stomatal movement	9.83E-03
94	GO:0010197: polar nucleus fusion	1.04E-02
95	GO:0042752: regulation of circadian rhythm	1.09E-02
96	GO:0009646: response to absence of light	1.09E-02
97	GO:0009851: auxin biosynthetic process	1.15E-02
98	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.20E-02
99	GO:0016032: viral process	1.26E-02
100	GO:0032502: developmental process	1.26E-02
101	GO:0007264: small GTPase mediated signal transduction	1.26E-02
102	GO:0009639: response to red or far red light	1.38E-02
103	GO:0000910: cytokinesis	1.50E-02
104	GO:0016126: sterol biosynthetic process	1.56E-02
105	GO:0015995: chlorophyll biosynthetic process	1.75E-02
106	GO:0018298: protein-chromophore linkage	1.88E-02
107	GO:0006811: ion transport	2.02E-02
108	GO:0010218: response to far red light	2.02E-02
109	GO:0009637: response to blue light	2.23E-02
110	GO:0009793: embryo development ending in seed dormancy	2.47E-02
111	GO:0006897: endocytosis	2.52E-02
112	GO:0009640: photomorphogenesis	2.67E-02
113	GO:0010114: response to red light	2.67E-02
114	GO:0009644: response to high light intensity	2.82E-02
115	GO:0009965: leaf morphogenesis	2.90E-02
116	GO:0006260: DNA replication	3.06E-02
117	GO:0000165: MAPK cascade	3.06E-02
118	GO:0051603: proteolysis involved in cellular protein catabolic process	3.38E-02
119	GO:0009909: regulation of flower development	3.55E-02
120	GO:0006417: regulation of translation	3.55E-02
121	GO:0006810: transport	4.41E-02
122	GO:0009416: response to light stimulus	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0030946: protein tyrosine phosphatase activity, metal-dependent	0.00E+00
2	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
3	GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity	0.00E+00
4	GO:1990534: thermospermine oxidase activity	0.00E+00
5	GO:0046906: tetrapyrrole binding	1.22E-04
6	GO:0033984: indole-3-glycerol-phosphate lyase activity	1.22E-04
7	GO:0004831: tyrosine-tRNA ligase activity	1.22E-04
8	GO:0004325: ferrochelatase activity	1.22E-04
9	GO:0035241: protein-arginine omega-N monomethyltransferase activity	2.82E-04
10	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	2.82E-04
11	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	2.82E-04
12	GO:0000900: translation repressor activity, nucleic acid binding	4.65E-04
13	GO:0008469: histone-arginine N-methyltransferase activity	4.65E-04
14	GO:0004180: carboxypeptidase activity	4.65E-04
15	GO:0004848: ureidoglycolate hydrolase activity	4.65E-04
16	GO:0019003: GDP binding	4.65E-04
17	GO:0009882: blue light photoreceptor activity	6.66E-04
18	GO:0043023: ribosomal large subunit binding	6.66E-04
19	GO:0005253: anion channel activity	8.84E-04
20	GO:0004834: tryptophan synthase activity	8.84E-04
21	GO:0004518: nuclease activity	1.06E-03
22	GO:0004519: endonuclease activity	1.15E-03
23	GO:0005247: voltage-gated chloride channel activity	1.37E-03
24	GO:0004144: diacylglycerol O-acyltransferase activity	1.64E-03
25	GO:0019899: enzyme binding	1.92E-03
26	GO:0003724: RNA helicase activity	2.54E-03
27	GO:0016491: oxidoreductase activity	2.76E-03
28	GO:0071949: FAD binding	2.87E-03
29	GO:0003723: RNA binding	2.89E-03
30	GO:0047372: acylglycerol lipase activity	3.94E-03
31	GO:0003690: double-stranded DNA binding	4.16E-03
32	GO:0003777: microtubule motor activity	4.44E-03
33	GO:0008131: primary amine oxidase activity	5.12E-03
34	GO:0003887: DNA-directed DNA polymerase activity	5.98E-03
35	GO:0019843: rRNA binding	7.14E-03
36	GO:0003727: single-stranded RNA binding	8.80E-03
37	GO:0004812: aminoacyl-tRNA ligase activity	9.31E-03
38	GO:0008080: N-acetyltransferase activity	1.04E-02
39	GO:0010181: FMN binding	1.09E-02
40	GO:0004872: receptor activity	1.15E-02
41	GO:0048038: quinone binding	1.20E-02
42	GO:0008483: transaminase activity	1.44E-02
43	GO:0008168: methyltransferase activity	1.47E-02
44	GO:0008236: serine-type peptidase activity	1.82E-02
45	GO:0005096: GTPase activator activity	1.95E-02
46	GO:0003746: translation elongation factor activity	2.23E-02
47	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.37E-02
48	GO:0042803: protein homodimerization activity	2.38E-02
49	GO:0051539: 4 iron, 4 sulfur cluster binding	2.44E-02
50	GO:0004185: serine-type carboxypeptidase activity	2.67E-02
51	GO:0003924: GTPase activity	2.81E-02
52	GO:0051537: 2 iron, 2 sulfur cluster binding	2.82E-02
53	GO:0035091: phosphatidylinositol binding	2.82E-02
54	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.80E-02
55	GO:0022857: transmembrane transporter activity	4.06E-02

Rank	GO Term	Adjusted P value
1	GO:0030427: site of polarized growth	0.00E+00
2	GO:0009507: chloroplast	9.53E-11
3	GO:0030286: dynein complex	1.25E-05
4	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.20E-04
5	GO:0005875: microtubule associated complex	3.77E-04
6	GO:0016605: PML body	4.65E-04
7	GO:0009535: chloroplast thylakoid membrane	5.42E-04
8	GO:0055035: plastid thylakoid membrane	1.12E-03
9	GO:0034707: chloride channel complex	1.37E-03
10	GO:0030140: trans-Golgi network transport vesicle	1.37E-03
11	GO:0009840: chloroplastic endopeptidase Clp complex	1.64E-03
12	GO:0000123: histone acetyltransferase complex	1.92E-03
13	GO:0005811: lipid particle	2.54E-03
14	GO:0046930: pore complex	2.54E-03
15	GO:0016604: nuclear body	3.21E-03
16	GO:0009570: chloroplast stroma	5.64E-03
17	GO:0009706: chloroplast inner membrane	5.71E-03
18	GO:0043234: protein complex	5.98E-03
19	GO:0043231: intracellular membrane-bounded organelle	6.16E-03
20	GO:0042651: thylakoid membrane	6.87E-03
21	GO:0005623: cell	7.33E-03
22	GO:0015935: small ribosomal subunit	7.34E-03
23	GO:0031969: chloroplast membrane	1.90E-02
24	GO:0005622: intracellular	2.33E-02
25	GO:0005819: spindle	2.37E-02
26	GO:0031966: mitochondrial membrane	3.14E-02