co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G04980

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019307: mannose biosynthetic process	0.00E+00
2	GO:0006489: dolichyl diphosphate biosynthetic process	0.00E+00
3	GO:0044794: positive regulation by host of viral process	0.00E+00
4	GO:0045047: protein targeting to ER	0.00E+00
5	GO:0030970: retrograde protein transport, ER to cytosol	0.00E+00
6	GO:0006511: ubiquitin-dependent protein catabolic process	2.30E-21
7	GO:0006457: protein folding	3.19E-18
8	GO:0034976: response to endoplasmic reticulum stress	9.63E-18
9	GO:0030433: ubiquitin-dependent ERAD pathway	5.20E-10
10	GO:0030163: protein catabolic process	4.58E-09
11	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	3.94E-08
12	GO:0046686: response to cadmium ion	1.49E-07
13	GO:0051788: response to misfolded protein	2.37E-07
14	GO:0009651: response to salt stress	3.48E-07
15	GO:0045454: cell redox homeostasis	7.93E-07
16	GO:0006487: protein N-linked glycosylation	3.50E-06
17	GO:0051603: proteolysis involved in cellular protein catabolic process	7.31E-06
18	GO:0043248: proteasome assembly	1.09E-05
19	GO:0042176: regulation of protein catabolic process	1.09E-05
20	GO:0006458: 'de novo' protein folding	1.57E-05
21	GO:0006886: intracellular protein transport	1.68E-05
22	GO:0030968: endoplasmic reticulum unfolded protein response	3.64E-05
23	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	5.22E-05
24	GO:0035266: meristem growth	6.42E-05
25	GO:0007292: female gamete generation	6.42E-05
26	GO:0009735: response to cytokinin	7.58E-05
27	GO:0045041: protein import into mitochondrial intermembrane space	1.55E-04
28	GO:0061077: chaperone-mediated protein folding	2.16E-04
29	GO:0006651: diacylglycerol biosynthetic process	2.63E-04
30	GO:0060968: regulation of gene silencing	2.63E-04
31	GO:0006013: mannose metabolic process	2.63E-04
32	GO:0055074: calcium ion homeostasis	2.63E-04
33	GO:0006954: inflammatory response	2.63E-04
34	GO:0001676: long-chain fatty acid metabolic process	3.82E-04
35	GO:0009298: GDP-mannose biosynthetic process	3.82E-04
36	GO:0009647: skotomorphogenesis	3.82E-04
37	GO:0010483: pollen tube reception	5.10E-04
38	GO:0010363: regulation of plant-type hypersensitive response	5.10E-04
39	GO:0018279: protein N-linked glycosylation via asparagine	6.45E-04
40	GO:0036065: fucosylation	6.45E-04
41	GO:0048827: phyllome development	7.90E-04
42	GO:0048232: male gamete generation	7.90E-04
43	GO:0010043: response to zinc ion	9.34E-04
44	GO:1901001: negative regulation of response to salt stress	9.40E-04
45	GO:0042026: protein refolding	9.40E-04
46	GO:0045087: innate immune response	1.02E-03
47	GO:0048528: post-embryonic root development	1.10E-03
48	GO:0016192: vesicle-mediated transport	1.20E-03
49	GO:0006605: protein targeting	1.26E-03
50	GO:0010078: maintenance of root meristem identity	1.26E-03
51	GO:0031540: regulation of anthocyanin biosynthetic process	1.26E-03
52	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	1.26E-03
53	GO:0006002: fructose 6-phosphate metabolic process	1.44E-03
54	GO:0009965: leaf morphogenesis	1.45E-03
55	GO:0015780: nucleotide-sugar transport	1.62E-03
56	GO:0046685: response to arsenic-containing substance	1.62E-03
57	GO:0010205: photoinhibition	1.81E-03
58	GO:0043067: regulation of programmed cell death	1.81E-03
59	GO:0009408: response to heat	1.84E-03
60	GO:0006979: response to oxidative stress	1.91E-03
61	GO:0048829: root cap development	2.01E-03
62	GO:0010015: root morphogenesis	2.21E-03
63	GO:0009553: embryo sac development	2.38E-03
64	GO:0010075: regulation of meristem growth	2.64E-03
65	GO:0015031: protein transport	2.72E-03
66	GO:0009934: regulation of meristem structural organization	2.87E-03
67	GO:0009933: meristem structural organization	2.87E-03
68	GO:0090351: seedling development	3.09E-03
69	GO:0009969: xyloglucan biosynthetic process	3.09E-03
70	GO:0019853: L-ascorbic acid biosynthetic process	3.09E-03
71	GO:0015992: proton transport	4.08E-03
72	GO:0009306: protein secretion	4.87E-03
73	GO:0042147: retrograde transport, endosome to Golgi	5.15E-03
74	GO:0051028: mRNA transport	5.15E-03
75	GO:0008033: tRNA processing	5.43E-03
76	GO:0000413: protein peptidyl-prolyl isomerization	5.43E-03
77	GO:0010197: polar nucleus fusion	5.72E-03
78	GO:0048868: pollen tube development	5.72E-03
79	GO:0048825: cotyledon development	6.31E-03
80	GO:0010193: response to ozone	6.61E-03
81	GO:0016032: viral process	6.92E-03
82	GO:0009567: double fertilization forming a zygote and endosperm	7.55E-03
83	GO:0006888: ER to Golgi vesicle-mediated transport	9.57E-03
84	GO:0009832: plant-type cell wall biogenesis	1.07E-02
85	GO:0010311: lateral root formation	1.07E-02
86	GO:0006499: N-terminal protein myristoylation	1.10E-02
87	GO:0048364: root development	1.24E-02
88	GO:0006631: fatty acid metabolic process	1.37E-02
89	GO:0000209: protein polyubiquitination	1.50E-02
90	GO:0009644: response to high light intensity	1.54E-02
91	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.66E-02
92	GO:0009736: cytokinin-activated signaling pathway	1.80E-02
93	GO:0006486: protein glycosylation	1.80E-02
94	GO:0006096: glycolytic process	2.02E-02
95	GO:0048367: shoot system development	2.07E-02
96	GO:0048316: seed development	2.07E-02
97	GO:0009793: embryo development ending in seed dormancy	2.68E-02
98	GO:0009790: embryo development	3.02E-02

Rank	GO Term	Adjusted P value
1	GO:0004615: phosphomannomutase activity	0.00E+00
2	GO:0004298: threonine-type endopeptidase activity	4.25E-17
3	GO:0051082: unfolded protein binding	3.14E-12
4	GO:0003756: protein disulfide isomerase activity	5.92E-12
5	GO:0008233: peptidase activity	1.13E-11
6	GO:0036402: proteasome-activating ATPase activity	3.94E-08
7	GO:0017025: TBP-class protein binding	2.38E-06
8	GO:0016887: ATPase activity	5.44E-06
9	GO:0008320: protein transmembrane transporter activity	2.15E-05
10	GO:0003975: UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity	6.42E-05
11	GO:1990381: ubiquitin-specific protease binding	6.42E-05
12	GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity	6.42E-05
13	GO:0015157: oligosaccharide transmembrane transporter activity	6.42E-05
14	GO:0030234: enzyme regulator activity	6.67E-05
15	GO:0044183: protein binding involved in protein folding	7.90E-05
16	GO:0008963: phospho-N-acetylmuramoyl-pentapeptide-transferase activity	1.55E-04
17	GO:0030246: carbohydrate binding	1.69E-04
18	GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity	2.63E-04
19	GO:0005460: UDP-glucose transmembrane transporter activity	3.82E-04
20	GO:0009678: hydrogen-translocating pyrophosphatase activity	3.82E-04
21	GO:0016853: isomerase activity	3.85E-04
22	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	5.10E-04
23	GO:0005459: UDP-galactose transmembrane transporter activity	6.45E-04
24	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	6.45E-04
25	GO:0004656: procollagen-proline 4-dioxygenase activity	9.40E-04
26	GO:0008195: phosphatidate phosphatase activity	9.40E-04
27	GO:0102391: decanoate--CoA ligase activity	9.40E-04
28	GO:0004467: long-chain fatty acid-CoA ligase activity	1.10E-03
29	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	1.10E-03
30	GO:0004427: inorganic diphosphatase activity	1.10E-03
31	GO:0003872: 6-phosphofructokinase activity	1.10E-03
32	GO:0008417: fucosyltransferase activity	1.62E-03
33	GO:0005509: calcium ion binding	1.67E-03
34	GO:0004175: endopeptidase activity	2.87E-03
35	GO:0005524: ATP binding	3.44E-03
36	GO:0031418: L-ascorbic acid binding	3.57E-03
37	GO:0010181: FMN binding	6.01E-03
38	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.22E-02
39	GO:0051539: 4 iron, 4 sulfur cluster binding	1.33E-02
40	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.62E-02
41	GO:0000166: nucleotide binding	2.11E-02
42	GO:0008026: ATP-dependent helicase activity	2.41E-02
43	GO:0016829: lyase activity	2.86E-02
44	GO:0004252: serine-type endopeptidase activity	2.92E-02
45	GO:0008565: protein transporter activity	3.08E-02
46	GO:0003743: translation initiation factor activity	3.80E-02

Rank	GO Term	Adjusted P value
1	GO:0005832: chaperonin-containing T-complex	0.00E+00
2	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
3	GO:0000502: proteasome complex	1.44E-34
4	GO:0005783: endoplasmic reticulum	1.35E-23
5	GO:0005788: endoplasmic reticulum lumen	1.58E-21
6	GO:0005839: proteasome core complex	4.25E-17
7	GO:0005774: vacuolar membrane	3.31E-14
8	GO:0008541: proteasome regulatory particle, lid subcomplex	2.44E-11
9	GO:0019773: proteasome core complex, alpha-subunit complex	1.05E-09
10	GO:0005829: cytosol	1.43E-09
11	GO:0008540: proteasome regulatory particle, base subcomplex	2.63E-09
12	GO:0005789: endoplasmic reticulum membrane	8.76E-09
13	GO:0031597: cytosolic proteasome complex	7.01E-08
14	GO:0031595: nuclear proteasome complex	1.15E-07
15	GO:0005838: proteasome regulatory particle	9.10E-07
16	GO:0005773: vacuole	2.69E-06
17	GO:0009506: plasmodesma	1.97E-05
18	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	2.15E-05
19	GO:0032580: Golgi cisterna membrane	2.31E-05
20	GO:0000836: Hrd1p ubiquitin ligase complex	6.42E-05
21	GO:0044322: endoplasmic reticulum quality control compartment	6.42E-05
22	GO:0010318: pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex	6.42E-05
23	GO:0030176: integral component of endoplasmic reticulum membrane	1.39E-04
24	GO:0030134: ER to Golgi transport vesicle	1.55E-04
25	GO:0005886: plasma membrane	1.63E-04
26	GO:0009507: chloroplast	1.90E-04
27	GO:0046861: glyoxysomal membrane	2.63E-04
28	GO:0016020: membrane	3.12E-04
29	GO:0036513: Derlin-1 retrotranslocation complex	3.82E-04
30	GO:0005737: cytoplasm	5.97E-04
31	GO:0008250: oligosaccharyltransferase complex	6.45E-04
32	GO:0030127: COPII vesicle coat	7.90E-04
33	GO:0030904: retromer complex	7.90E-04
34	GO:0005794: Golgi apparatus	8.48E-04
35	GO:0000326: protein storage vacuole	1.44E-03
36	GO:0009514: glyoxysome	1.44E-03
37	GO:0009505: plant-type cell wall	2.66E-03
38	GO:0005623: cell	3.14E-03
39	GO:0022626: cytosolic ribosome	3.58E-03
40	GO:0005618: cell wall	4.15E-03
41	GO:0016592: mediator complex	6.92E-03
42	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	7.11E-03
43	GO:0005643: nuclear pore	1.03E-02
44	GO:0005819: spindle	1.29E-02
45	GO:0048046: apoplast	1.34E-02
46	GO:0031902: late endosome membrane	1.37E-02
47	GO:0005635: nuclear envelope	1.89E-02
48	GO:0009524: phragmoplast	2.81E-02
49	GO:0005622: intracellular	3.75E-02