co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G04640

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0036172: thiamine salvage	0.00E+00
2	GO:0046460: neutral lipid biosynthetic process	0.00E+00
3	GO:0032928: regulation of superoxide anion generation	0.00E+00
4	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
5	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
6	GO:0042793: transcription from plastid promoter	3.28E-05
7	GO:0034971: histone H3-R17 methylation	1.25E-04
8	GO:0071454: cellular response to anoxia	1.25E-04
9	GO:0048438: floral whorl development	1.25E-04
10	GO:0034970: histone H3-R2 methylation	1.25E-04
11	GO:0034972: histone H3-R26 methylation	1.25E-04
12	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	2.90E-04
13	GO:0016122: xanthophyll metabolic process	2.90E-04
14	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	2.90E-04
15	GO:0080153: negative regulation of reductive pentose-phosphate cycle	2.90E-04
16	GO:0010275: NAD(P)H dehydrogenase complex assembly	2.90E-04
17	GO:0060359: response to ammonium ion	2.90E-04
18	GO:0019253: reductive pentose-phosphate cycle	3.14E-04
19	GO:0010207: photosystem II assembly	3.14E-04
20	GO:0009150: purine ribonucleotide metabolic process	4.78E-04
21	GO:0071492: cellular response to UV-A	4.78E-04
22	GO:0043157: response to cation stress	4.78E-04
23	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	4.78E-04
24	GO:0033014: tetrapyrrole biosynthetic process	6.85E-04
25	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	6.85E-04
26	GO:0034613: cellular protein localization	9.08E-04
27	GO:0071486: cellular response to high light intensity	9.08E-04
28	GO:0009765: photosynthesis, light harvesting	9.08E-04
29	GO:0010117: photoprotection	1.15E-03
30	GO:0009229: thiamine diphosphate biosynthetic process	1.15E-03
31	GO:0010438: cellular response to sulfur starvation	1.15E-03
32	GO:0000741: karyogamy	1.41E-03
33	GO:0009228: thiamine biosynthetic process	1.41E-03
34	GO:0016070: RNA metabolic process	1.41E-03
35	GO:0009959: negative gravitropism	1.41E-03
36	GO:0031053: primary miRNA processing	1.41E-03
37	GO:0034389: lipid particle organization	1.68E-03
38	GO:0010076: maintenance of floral meristem identity	1.68E-03
39	GO:0017148: negative regulation of translation	1.68E-03
40	GO:0015977: carbon fixation	1.68E-03
41	GO:0010439: regulation of glucosinolate biosynthetic process	2.29E-03
42	GO:0009704: de-etiolation	2.29E-03
43	GO:0048564: photosystem I assembly	2.29E-03
44	GO:0045292: mRNA cis splicing, via spliceosome	2.29E-03
45	GO:0010928: regulation of auxin mediated signaling pathway	2.29E-03
46	GO:0019430: removal of superoxide radicals	2.61E-03
47	GO:0010100: negative regulation of photomorphogenesis	2.61E-03
48	GO:0032544: plastid translation	2.61E-03
49	GO:0022900: electron transport chain	2.61E-03
50	GO:0006783: heme biosynthetic process	2.95E-03
51	GO:0015780: nucleotide-sugar transport	2.95E-03
52	GO:0009245: lipid A biosynthetic process	2.95E-03
53	GO:0019432: triglyceride biosynthetic process	2.95E-03
54	GO:0006779: porphyrin-containing compound biosynthetic process	3.31E-03
55	GO:1900865: chloroplast RNA modification	3.31E-03
56	GO:0006810: transport	3.61E-03
57	GO:0009688: abscisic acid biosynthetic process	3.68E-03
58	GO:0009682: induced systemic resistance	4.06E-03
59	GO:0010582: floral meristem determinacy	4.45E-03
60	GO:0006790: sulfur compound metabolic process	4.45E-03
61	GO:0009767: photosynthetic electron transport chain	4.86E-03
62	GO:0009266: response to temperature stimulus	5.28E-03
63	GO:0034605: cellular response to heat	5.28E-03
64	GO:0006071: glycerol metabolic process	6.15E-03
65	GO:0000162: tryptophan biosynthetic process	6.15E-03
66	GO:0009625: response to insect	8.56E-03
67	GO:0070417: cellular response to cold	9.60E-03
68	GO:0009451: RNA modification	1.05E-02
69	GO:0009958: positive gravitropism	1.07E-02
70	GO:0010197: polar nucleus fusion	1.07E-02
71	GO:0009851: auxin biosynthetic process	1.18E-02
72	GO:0009630: gravitropism	1.30E-02
73	GO:0007264: small GTPase mediated signal transduction	1.30E-02
74	GO:0009658: chloroplast organization	1.60E-02
75	GO:0010027: thylakoid membrane organization	1.61E-02
76	GO:0016126: sterol biosynthetic process	1.61E-02
77	GO:0042254: ribosome biogenesis	1.63E-02
78	GO:0010218: response to far red light	2.08E-02
79	GO:0009910: negative regulation of flower development	2.15E-02
80	GO:0009637: response to blue light	2.30E-02
81	GO:0009853: photorespiration	2.30E-02
82	GO:0010114: response to red light	2.75E-02
83	GO:0009744: response to sucrose	2.75E-02
84	GO:0032259: methylation	2.81E-02
85	GO:0009751: response to salicylic acid	2.89E-02
86	GO:0008643: carbohydrate transport	2.91E-02
87	GO:0006281: DNA repair	2.93E-02
88	GO:0006260: DNA replication	3.15E-02
89	GO:0000165: MAPK cascade	3.15E-02
90	GO:0009585: red, far-red light phototransduction	3.40E-02
91	GO:0051603: proteolysis involved in cellular protein catabolic process	3.49E-02
92	GO:0009909: regulation of flower development	3.66E-02
93	GO:0006417: regulation of translation	3.66E-02
94	GO:0006396: RNA processing	4.47E-02
95	GO:0000398: mRNA splicing, via spliceosome	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
2	GO:0004848: ureidoglycolate hydrolase activity	2.99E-06
3	GO:0048038: quinone binding	6.91E-05
4	GO:0004325: ferrochelatase activity	1.25E-04
5	GO:0033984: indole-3-glycerol-phosphate lyase activity	1.25E-04
6	GO:0004563: beta-N-acetylhexosaminidase activity	2.90E-04
7	GO:0035241: protein-arginine omega-N monomethyltransferase activity	2.90E-04
8	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	2.90E-04
9	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	2.90E-04
10	GO:0015929: hexosaminidase activity	2.90E-04
11	GO:0000900: translation repressor activity, nucleic acid binding	4.78E-04
12	GO:0017176: phosphatidylinositol N-acetylglucosaminyltransferase activity	4.78E-04
13	GO:0008469: histone-arginine N-methyltransferase activity	4.78E-04
14	GO:0019003: GDP binding	4.78E-04
15	GO:0000339: RNA cap binding	6.85E-04
16	GO:0047627: adenylylsulfatase activity	6.85E-04
17	GO:0043023: ribosomal large subunit binding	6.85E-04
18	GO:0016984: ribulose-bisphosphate carboxylase activity	6.85E-04
19	GO:0000254: C-4 methylsterol oxidase activity	6.85E-04
20	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	9.08E-04
21	GO:0004834: tryptophan synthase activity	9.08E-04
22	GO:0005319: lipid transporter activity	9.08E-04
23	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	9.08E-04
24	GO:0008374: O-acyltransferase activity	1.15E-03
25	GO:0004784: superoxide dismutase activity	1.41E-03
26	GO:0031177: phosphopantetheine binding	1.41E-03
27	GO:0000035: acyl binding	1.68E-03
28	GO:0004144: diacylglycerol O-acyltransferase activity	1.68E-03
29	GO:0005338: nucleotide-sugar transmembrane transporter activity	1.98E-03
30	GO:0004525: ribonuclease III activity	2.29E-03
31	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	2.29E-03
32	GO:0008168: methyltransferase activity	2.55E-03
33	GO:0071949: FAD binding	2.95E-03
34	GO:0001055: RNA polymerase II activity	3.31E-03
35	GO:0001054: RNA polymerase I activity	4.06E-03
36	GO:0001056: RNA polymerase III activity	4.45E-03
37	GO:0031072: heat shock protein binding	4.86E-03
38	GO:0022857: transmembrane transporter activity	5.61E-03
39	GO:0003887: DNA-directed DNA polymerase activity	6.15E-03
40	GO:0035251: UDP-glucosyltransferase activity	7.56E-03
41	GO:0003723: RNA binding	9.02E-03
42	GO:0008080: N-acetyltransferase activity	1.07E-02
43	GO:0016491: oxidoreductase activity	1.14E-02
44	GO:0016168: chlorophyll binding	1.67E-02
45	GO:0004222: metalloendopeptidase activity	2.08E-02
46	GO:0003746: translation elongation factor activity	2.30E-02
47	GO:0003697: single-stranded DNA binding	2.30E-02
48	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.45E-02
49	GO:0004185: serine-type carboxypeptidase activity	2.75E-02
50	GO:0005506: iron ion binding	2.84E-02
51	GO:0051537: 2 iron, 2 sulfur cluster binding	2.91E-02
52	GO:0004519: endonuclease activity	3.19E-02
53	GO:0003824: catalytic activity	3.26E-02
54	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.40E-02
55	GO:0051082: unfolded protein binding	4.37E-02

Rank	GO Term	Adjusted P value
1	GO:0030427: site of polarized growth	0.00E+00
2	GO:0009507: chloroplast	2.36E-15
3	GO:0009535: chloroplast thylakoid membrane	3.99E-09
4	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.35E-08
5	GO:0009295: nucleoid	1.01E-04
6	GO:0043190: ATP-binding cassette (ABC) transporter complex	1.25E-04
7	GO:0005845: mRNA cap binding complex	1.25E-04
8	GO:0009508: plastid chromosome	2.77E-04
9	GO:0005846: nuclear cap binding complex	2.90E-04
10	GO:0009573: chloroplast ribulose bisphosphate carboxylase complex	4.78E-04
11	GO:0031969: chloroplast membrane	6.02E-04
12	GO:0042646: plastid nucleoid	6.85E-04
13	GO:0009517: PSII associated light-harvesting complex II	9.08E-04
14	GO:0055035: plastid thylakoid membrane	1.15E-03
15	GO:0009570: chloroplast stroma	2.12E-03
16	GO:0005811: lipid particle	2.61E-03
17	GO:0042644: chloroplast nucleoid	2.95E-03
18	GO:0009534: chloroplast thylakoid	3.42E-03
19	GO:0043234: protein complex	6.15E-03
20	GO:0000419: DNA-directed RNA polymerase V complex	6.15E-03
21	GO:0070469: respiratory chain	7.08E-03
22	GO:0015935: small ribosomal subunit	7.56E-03
23	GO:0009941: chloroplast envelope	9.22E-03
24	GO:0009523: photosystem II	1.18E-02
25	GO:0009579: thylakoid	1.50E-02
26	GO:0009707: chloroplast outer membrane	1.94E-02
27	GO:0005819: spindle	2.45E-02
28	GO:0031966: mitochondrial membrane	3.24E-02
29	GO:0009536: plastid	3.74E-02
30	GO:0009706: chloroplast inner membrane	4.37E-02