co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G04550

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046294: formaldehyde catabolic process	0.00E+00
2	GO:0016093: polyprenol metabolic process	0.00E+00
3	GO:0045747: positive regulation of Notch signaling pathway	0.00E+00
4	GO:0071000: response to magnetism	0.00E+00
5	GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine	0.00E+00
6	GO:0032928: regulation of superoxide anion generation	0.00E+00
7	GO:1904215: regulation of protein import into chloroplast stroma	0.00E+00
8	GO:0009236: cobalamin biosynthetic process	0.00E+00
9	GO:0033317: pantothenate biosynthetic process from valine	0.00E+00
10	GO:0032780: negative regulation of ATPase activity	0.00E+00
11	GO:0009583: detection of light stimulus	0.00E+00
12	GO:0010117: photoprotection	1.55E-05
13	GO:0046283: anthocyanin-containing compound metabolic process	1.55E-05
14	GO:0019346: transsulfuration	1.02E-04
15	GO:0019343: cysteine biosynthetic process via cystathionine	1.02E-04
16	GO:0072387: flavin adenine dinucleotide metabolic process	1.02E-04
17	GO:0019354: siroheme biosynthetic process	1.02E-04
18	GO:0051171: regulation of nitrogen compound metabolic process	1.02E-04
19	GO:0071266: 'de novo' L-methionine biosynthetic process	1.02E-04
20	GO:1900426: positive regulation of defense response to bacterium	1.12E-04
21	GO:0055114: oxidation-reduction process	1.62E-04
22	GO:2000030: regulation of response to red or far red light	2.40E-04
23	GO:2000071: regulation of defense response by callose deposition	2.40E-04
24	GO:0010617: circadian regulation of calcium ion oscillation	2.40E-04
25	GO:0099402: plant organ development	2.40E-04
26	GO:0009308: amine metabolic process	2.40E-04
27	GO:0006996: organelle organization	2.40E-04
28	GO:0080183: response to photooxidative stress	2.40E-04
29	GO:0016122: xanthophyll metabolic process	2.40E-04
30	GO:0010343: singlet oxygen-mediated programmed cell death	2.40E-04
31	GO:1901529: positive regulation of anion channel activity	2.40E-04
32	GO:1901672: positive regulation of systemic acquired resistance	3.99E-04
33	GO:1901562: response to paraquat	3.99E-04
34	GO:0015940: pantothenate biosynthetic process	3.99E-04
35	GO:0071492: cellular response to UV-A	3.99E-04
36	GO:0010351: lithium ion transport	3.99E-04
37	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	3.99E-04
38	GO:1902448: positive regulation of shade avoidance	3.99E-04
39	GO:0016226: iron-sulfur cluster assembly	4.41E-04
40	GO:0006809: nitric oxide biosynthetic process	5.73E-04
41	GO:0009963: positive regulation of flavonoid biosynthetic process	5.73E-04
42	GO:0009647: skotomorphogenesis	5.73E-04
43	GO:0010255: glucose mediated signaling pathway	5.73E-04
44	GO:1901332: negative regulation of lateral root development	5.73E-04
45	GO:1902290: positive regulation of defense response to oomycetes	5.73E-04
46	GO:0010118: stomatal movement	6.09E-04
47	GO:0009649: entrainment of circadian clock	7.62E-04
48	GO:0006749: glutathione metabolic process	7.62E-04
49	GO:1902347: response to strigolactone	7.62E-04
50	GO:0034613: cellular protein localization	7.62E-04
51	GO:0071486: cellular response to high light intensity	7.62E-04
52	GO:0009765: photosynthesis, light harvesting	7.62E-04
53	GO:0006221: pyrimidine nucleotide biosynthetic process	7.62E-04
54	GO:0098719: sodium ion import across plasma membrane	9.62E-04
55	GO:0010236: plastoquinone biosynthetic process	9.62E-04
56	GO:1901371: regulation of leaf morphogenesis	1.17E-03
57	GO:0060918: auxin transport	1.17E-03
58	GO:0006796: phosphate-containing compound metabolic process	1.17E-03
59	GO:0009117: nucleotide metabolic process	1.17E-03
60	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.17E-03
61	GO:0016070: RNA metabolic process	1.17E-03
62	GO:0031053: primary miRNA processing	1.17E-03
63	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.40E-03
64	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	1.40E-03
65	GO:0017148: negative regulation of translation	1.40E-03
66	GO:0010310: regulation of hydrogen peroxide metabolic process	1.40E-03
67	GO:0009407: toxin catabolic process	1.62E-03
68	GO:0051510: regulation of unidimensional cell growth	1.65E-03
69	GO:0071446: cellular response to salicylic acid stimulus	1.65E-03
70	GO:0009787: regulation of abscisic acid-activated signaling pathway	1.90E-03
71	GO:1900150: regulation of defense response to fungus	1.90E-03
72	GO:0030091: protein repair	1.90E-03
73	GO:0009231: riboflavin biosynthetic process	1.90E-03
74	GO:0045292: mRNA cis splicing, via spliceosome	1.90E-03
75	GO:0005978: glycogen biosynthetic process	1.90E-03
76	GO:2000031: regulation of salicylic acid mediated signaling pathway	2.17E-03
77	GO:0015996: chlorophyll catabolic process	2.17E-03
78	GO:0009640: photomorphogenesis	2.38E-03
79	GO:0015780: nucleotide-sugar transport	2.45E-03
80	GO:0046685: response to arsenic-containing substance	2.45E-03
81	GO:0010380: regulation of chlorophyll biosynthetic process	2.74E-03
82	GO:0051453: regulation of intracellular pH	2.74E-03
83	GO:0009638: phototropism	2.74E-03
84	GO:0009688: abscisic acid biosynthetic process	3.05E-03
85	GO:0009641: shade avoidance	3.05E-03
86	GO:0010224: response to UV-B	3.30E-03
87	GO:0009682: induced systemic resistance	3.36E-03
88	GO:0006879: cellular iron ion homeostasis	3.36E-03
89	GO:0045037: protein import into chloroplast stroma	3.69E-03
90	GO:0009785: blue light signaling pathway	4.02E-03
91	GO:0050826: response to freezing	4.02E-03
92	GO:0010075: regulation of meristem growth	4.02E-03
93	GO:0010187: negative regulation of seed germination	5.46E-03
94	GO:2000377: regulation of reactive oxygen species metabolic process	5.46E-03
95	GO:0006487: protein N-linked glycosylation	5.46E-03
96	GO:0008299: isoprenoid biosynthetic process	5.85E-03
97	GO:0019915: lipid storage	6.24E-03
98	GO:2000022: regulation of jasmonic acid mediated signaling pathway	6.64E-03
99	GO:0009693: ethylene biosynthetic process	7.06E-03
100	GO:0006012: galactose metabolic process	7.06E-03
101	GO:0007623: circadian rhythm	7.80E-03
102	GO:0006508: proteolysis	8.02E-03
103	GO:0009416: response to light stimulus	8.38E-03
104	GO:0006520: cellular amino acid metabolic process	8.80E-03
105	GO:0006814: sodium ion transport	9.26E-03
106	GO:0042752: regulation of circadian rhythm	9.26E-03
107	GO:0009646: response to absence of light	9.26E-03
108	GO:0019252: starch biosynthetic process	9.73E-03
109	GO:0002229: defense response to oomycetes	1.02E-02
110	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.02E-02
111	GO:0010090: trichome morphogenesis	1.12E-02
112	GO:0030163: protein catabolic process	1.12E-02
113	GO:0006464: cellular protein modification process	1.17E-02
114	GO:0071805: potassium ion transmembrane transport	1.22E-02
115	GO:0009615: response to virus	1.32E-02
116	GO:0009816: defense response to bacterium, incompatible interaction	1.38E-02
117	GO:0048573: photoperiodism, flowering	1.48E-02
118	GO:0018298: protein-chromophore linkage	1.60E-02
119	GO:0008219: cell death	1.60E-02
120	GO:0009813: flavonoid biosynthetic process	1.65E-02
121	GO:0010218: response to far red light	1.71E-02
122	GO:0010119: regulation of stomatal movement	1.77E-02
123	GO:0010043: response to zinc ion	1.77E-02
124	GO:0009910: negative regulation of flower development	1.77E-02
125	GO:0009867: jasmonic acid mediated signaling pathway	1.89E-02
126	GO:0009637: response to blue light	1.89E-02
127	GO:0009853: photorespiration	1.89E-02
128	GO:0006281: DNA repair	2.22E-02
129	GO:0010114: response to red light	2.26E-02
130	GO:0008643: carbohydrate transport	2.39E-02
131	GO:0009644: response to high light intensity	2.39E-02
132	GO:0009636: response to toxic substance	2.46E-02
133	GO:0009965: leaf morphogenesis	2.46E-02
134	GO:0031347: regulation of defense response	2.59E-02
135	GO:0006486: protein glycosylation	2.80E-02
136	GO:0009585: red, far-red light phototransduction	2.80E-02
137	GO:0051603: proteolysis involved in cellular protein catabolic process	2.86E-02
138	GO:0009620: response to fungus	3.37E-02
139	GO:0016569: covalent chromatin modification	3.44E-02
140	GO:0009740: gibberellic acid mediated signaling pathway	3.44E-02
141	GO:0009738: abscisic acid-activated signaling pathway	3.81E-02
142	GO:0000398: mRNA splicing, via spliceosome	3.98E-02
143	GO:0009058: biosynthetic process	4.38E-02

Rank	GO Term	Adjusted P value
1	GO:0051266: sirohydrochlorin ferrochelatase activity	0.00E+00
2	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
3	GO:0016852: sirohydrochlorin cobaltochelatase activity	0.00E+00
4	GO:0042030: ATPase inhibitor activity	0.00E+00
5	GO:0004592: pantoate-beta-alanine ligase activity	0.00E+00
6	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	4.93E-06
7	GO:0071949: FAD binding	9.24E-05
8	GO:0004121: cystathionine beta-lyase activity	1.02E-04
9	GO:0052594: aminoacetone:oxygen oxidoreductase(deaminating) activity	1.02E-04
10	GO:0010313: phytochrome binding	1.02E-04
11	GO:0052593: tryptamine:oxygen oxidoreductase (deaminating) activity	1.02E-04
12	GO:0052595: aliphatic-amine oxidase activity	1.02E-04
13	GO:0030611: arsenate reductase activity	1.02E-04
14	GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity	1.02E-04
15	GO:0004123: cystathionine gamma-lyase activity	1.02E-04
16	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	1.02E-04
17	GO:0052596: phenethylamine:oxygen oxidoreductase (deaminating) activity	1.02E-04
18	GO:0004046: aminoacylase activity	2.40E-04
19	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	2.40E-04
20	GO:0050347: trans-octaprenyltranstransferase activity	2.40E-04
21	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	2.40E-04
22	GO:0051536: iron-sulfur cluster binding	3.32E-04
23	GO:0004848: ureidoglycolate hydrolase activity	3.99E-04
24	GO:0003935: GTP cyclohydrolase II activity	3.99E-04
25	GO:0003962: cystathionine gamma-synthase activity	3.99E-04
26	GO:0035529: NADH pyrophosphatase activity	5.73E-04
27	GO:0000339: RNA cap binding	5.73E-04
28	GO:0009882: blue light photoreceptor activity	5.73E-04
29	GO:0048027: mRNA 5'-UTR binding	5.73E-04
30	GO:0008878: glucose-1-phosphate adenylyltransferase activity	7.62E-04
31	GO:0048038: quinone binding	8.02E-04
32	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	1.17E-03
33	GO:0015081: sodium ion transmembrane transporter activity	1.17E-03
34	GO:0042802: identical protein binding	1.47E-03
35	GO:0005338: nucleotide-sugar transmembrane transporter activity	1.65E-03
36	GO:0004427: inorganic diphosphatase activity	1.65E-03
37	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	1.90E-03
38	GO:0004034: aldose 1-epimerase activity	1.90E-03
39	GO:0004364: glutathione transferase activity	2.29E-03
40	GO:0004185: serine-type carboxypeptidase activity	2.38E-03
41	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	2.45E-03
42	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	2.45E-03
43	GO:0015386: potassium:proton antiporter activity	3.36E-03
44	GO:0008794: arsenate reductase (glutaredoxin) activity	3.36E-03
45	GO:0031072: heat shock protein binding	4.02E-03
46	GO:0008131: primary amine oxidase activity	4.37E-03
47	GO:0004725: protein tyrosine phosphatase activity	5.09E-03
48	GO:0004176: ATP-dependent peptidase activity	6.24E-03
49	GO:0030170: pyridoxal phosphate binding	6.28E-03
50	GO:0016491: oxidoreductase activity	7.45E-03
51	GO:0001085: RNA polymerase II transcription factor binding	8.80E-03
52	GO:0016853: isomerase activity	9.26E-03
53	GO:0004518: nuclease activity	1.07E-02
54	GO:0015385: sodium:proton antiporter activity	1.12E-02
55	GO:0046872: metal ion binding	1.16E-02
56	GO:0004601: peroxidase activity	1.21E-02
57	GO:0008237: metallopeptidase activity	1.22E-02
58	GO:0008483: transaminase activity	1.22E-02
59	GO:0016168: chlorophyll binding	1.38E-02
60	GO:0005515: protein binding	1.46E-02
61	GO:0004806: triglyceride lipase activity	1.48E-02
62	GO:0008236: serine-type peptidase activity	1.54E-02
63	GO:0016787: hydrolase activity	1.55E-02
64	GO:0004222: metalloendopeptidase activity	1.71E-02
65	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.77E-02
66	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.89E-02
67	GO:0042803: protein homodimerization activity	1.89E-02
68	GO:0051539: 4 iron, 4 sulfur cluster binding	2.07E-02
69	GO:0005198: structural molecule activity	2.46E-02
70	GO:0004672: protein kinase activity	3.31E-02
71	GO:0016874: ligase activity	3.44E-02
72	GO:0022857: transmembrane transporter activity	3.44E-02
73	GO:0051082: unfolded protein binding	3.59E-02
74	GO:0016746: transferase activity, transferring acyl groups	3.67E-02
75	GO:0004252: serine-type endopeptidase activity	4.54E-02
76	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0000152: nuclear ubiquitin ligase complex	1.02E-04
2	GO:0005845: mRNA cap binding complex	1.02E-04
3	GO:0016604: nuclear body	1.12E-04
4	GO:0005846: nuclear cap binding complex	2.40E-04
5	GO:0009507: chloroplast	3.78E-04
6	GO:0016605: PML body	3.99E-04
7	GO:0009517: PSII associated light-harvesting complex II	7.62E-04
8	GO:0031463: Cul3-RING ubiquitin ligase complex	1.17E-03
9	GO:0009840: chloroplastic endopeptidase Clp complex	1.40E-03
10	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.45E-03
11	GO:0005747: mitochondrial respiratory chain complex I	3.89E-03
12	GO:0005764: lysosome	4.37E-03
13	GO:0030176: integral component of endoplasmic reticulum membrane	4.72E-03
14	GO:0005875: microtubule associated complex	5.09E-03
15	GO:0010287: plastoglobule	5.36E-03
16	GO:0045271: respiratory chain complex I	5.85E-03
17	GO:0009532: plastid stroma	6.24E-03
18	GO:0009523: photosystem II	9.73E-03
19	GO:0005777: peroxisome	9.99E-03
20	GO:0032580: Golgi cisterna membrane	1.17E-02
21	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.33E-02
22	GO:0005667: transcription factor complex	1.43E-02
23	GO:0031969: chloroplast membrane	1.50E-02
24	GO:0009707: chloroplast outer membrane	1.60E-02
25	GO:0009941: chloroplast envelope	1.67E-02
26	GO:0031966: mitochondrial membrane	2.66E-02
27	GO:0009570: chloroplast stroma	2.93E-02
28	GO:0016607: nuclear speck	3.22E-02
29	GO:0010008: endosome membrane	3.22E-02
30	GO:0005783: endoplasmic reticulum	3.25E-02
31	GO:0009706: chloroplast inner membrane	3.59E-02
32	GO:0009543: chloroplast thylakoid lumen	4.22E-02