Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G04360

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009661: chromoplast organization0.00E+00
2GO:0018293: protein-FAD linkage0.00E+00
3GO:0034553: mitochondrial respiratory chain complex II assembly0.00E+00
4GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
5GO:0033231: carbohydrate export0.00E+00
6GO:0090470: shoot organ boundary specification0.00E+00
7GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene0.00E+00
8GO:0009902: chloroplast relocation3.45E-07
9GO:0016120: carotene biosynthetic process7.82E-07
10GO:0055114: oxidation-reduction process2.18E-05
11GO:0010190: cytochrome b6f complex assembly1.18E-04
12GO:0016226: iron-sulfur cluster assembly1.42E-04
13GO:0009903: chloroplast avoidance movement1.62E-04
14GO:0016117: carotenoid biosynthetic process2.04E-04
15GO:0009787: regulation of abscisic acid-activated signaling pathway2.69E-04
16GO:0071461: cellular response to redox state2.77E-04
17GO:0048438: floral whorl development2.77E-04
18GO:0006430: lysyl-tRNA aminoacylation2.77E-04
19GO:0080065: 4-alpha-methyl-delta7-sterol oxidation2.77E-04
20GO:1902334: fructose export from vacuole to cytoplasm2.77E-04
21GO:0010362: negative regulation of anion channel activity by blue light2.77E-04
22GO:0015755: fructose transport2.77E-04
23GO:1902265: abscisic acid homeostasis2.77E-04
24GO:0000103: sulfate assimilation5.52E-04
25GO:0009970: cellular response to sulfate starvation5.52E-04
26GO:0006995: cellular response to nitrogen starvation5.52E-04
27GO:0007154: cell communication6.09E-04
28GO:0006898: receptor-mediated endocytosis6.09E-04
29GO:0000256: allantoin catabolic process6.09E-04
30GO:0010220: positive regulation of vernalization response6.09E-04
31GO:2000071: regulation of defense response by callose deposition6.09E-04
32GO:1904143: positive regulation of carotenoid biosynthetic process6.09E-04
33GO:0080183: response to photooxidative stress6.09E-04
34GO:0043100: pyrimidine nucleobase salvage6.09E-04
35GO:0042754: negative regulation of circadian rhythm6.09E-04
36GO:0010275: NAD(P)H dehydrogenase complex assembly6.09E-04
37GO:0080005: photosystem stoichiometry adjustment6.09E-04
38GO:0019388: galactose catabolic process6.09E-04
39GO:2000030: regulation of response to red or far red light6.09E-04
40GO:0015995: chlorophyll biosynthetic process6.66E-04
41GO:1901562: response to paraquat9.88E-04
42GO:0009150: purine ribonucleotide metabolic process9.88E-04
43GO:0006696: ergosterol biosynthetic process9.88E-04
44GO:0044375: regulation of peroxisome size9.88E-04
45GO:0016570: histone modification9.88E-04
46GO:0031022: nuclear migration along microfilament9.88E-04
47GO:0019419: sulfate reduction9.88E-04
48GO:0010136: ureide catabolic process9.88E-04
49GO:0009963: positive regulation of flavonoid biosynthetic process1.41E-03
50GO:0009590: detection of gravity1.41E-03
51GO:0050482: arachidonic acid secretion1.41E-03
52GO:2001141: regulation of RNA biosynthetic process1.41E-03
53GO:0010371: regulation of gibberellin biosynthetic process1.41E-03
54GO:0071484: cellular response to light intensity1.41E-03
55GO:0009647: skotomorphogenesis1.41E-03
56GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity1.41E-03
57GO:0006145: purine nucleobase catabolic process1.41E-03
58GO:0071483: cellular response to blue light1.89E-03
59GO:0010021: amylopectin biosynthetic process1.89E-03
60GO:0070534: protein K63-linked ubiquitination1.89E-03
61GO:0071585: detoxification of cadmium ion1.89E-03
62GO:0009649: entrainment of circadian clock1.89E-03
63GO:0010118: stomatal movement2.33E-03
64GO:0009658: chloroplast organization2.37E-03
65GO:0010117: photoprotection2.41E-03
66GO:0046283: anthocyanin-containing compound metabolic process2.41E-03
67GO:0009904: chloroplast accumulation movement2.41E-03
68GO:0010236: plastoquinone biosynthetic process2.41E-03
69GO:0035434: copper ion transmembrane transport2.41E-03
70GO:0019252: starch biosynthetic process2.89E-03
71GO:0009117: nucleotide metabolic process2.98E-03
72GO:0000060: protein import into nucleus, translocation2.98E-03
73GO:0006121: mitochondrial electron transport, succinate to ubiquinone2.98E-03
74GO:0006301: postreplication repair2.98E-03
75GO:0010304: PSII associated light-harvesting complex II catabolic process2.98E-03
76GO:0006555: methionine metabolic process2.98E-03
77GO:0070814: hydrogen sulfide biosynthetic process2.98E-03
78GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.09E-03
79GO:0010189: vitamin E biosynthetic process3.58E-03
80GO:0010019: chloroplast-nucleus signaling pathway3.58E-03
81GO:0009648: photoperiodism3.58E-03
82GO:0010077: maintenance of inflorescence meristem identity3.58E-03
83GO:0019509: L-methionine salvage from methylthioadenosine3.58E-03
84GO:0010076: maintenance of floral meristem identity3.58E-03
85GO:0010038: response to metal ion4.23E-03
86GO:0050790: regulation of catalytic activity4.23E-03
87GO:0006368: transcription elongation from RNA polymerase II promoter4.23E-03
88GO:0045454: cell redox homeostasis4.33E-03
89GO:0050821: protein stabilization4.90E-03
90GO:0009231: riboflavin biosynthetic process4.90E-03
91GO:0006102: isocitrate metabolic process4.90E-03
92GO:0016559: peroxisome fission4.90E-03
93GO:0006644: phospholipid metabolic process4.90E-03
94GO:0048564: photosystem I assembly4.90E-03
95GO:0030091: protein repair4.90E-03
96GO:0005978: glycogen biosynthetic process4.90E-03
97GO:0010100: negative regulation of photomorphogenesis5.62E-03
98GO:0048574: long-day photoperiodism, flowering5.62E-03
99GO:0071482: cellular response to light stimulus5.62E-03
100GO:0015996: chlorophyll catabolic process5.62E-03
101GO:0019430: removal of superoxide radicals5.62E-03
102GO:0018298: protein-chromophore linkage5.83E-03
103GO:0009821: alkaloid biosynthetic process6.37E-03
104GO:0034765: regulation of ion transmembrane transport6.37E-03
105GO:0046916: cellular transition metal ion homeostasis6.37E-03
106GO:0007623: circadian rhythm6.39E-03
107GO:0010043: response to zinc ion6.75E-03
108GO:0009638: phototropism7.15E-03
109GO:0009739: response to gibberellin7.37E-03
110GO:0009637: response to blue light7.40E-03
111GO:0006099: tricarboxylic acid cycle7.73E-03
112GO:0045036: protein targeting to chloroplast7.97E-03
113GO:0009641: shade avoidance7.97E-03
114GO:0051555: flavonol biosynthetic process7.97E-03
115GO:0006879: cellular iron ion homeostasis8.82E-03
116GO:0006352: DNA-templated transcription, initiation8.82E-03
117GO:0009750: response to fructose8.82E-03
118GO:0016485: protein processing8.82E-03
119GO:0048229: gametophyte development8.82E-03
120GO:0009773: photosynthetic electron transport in photosystem I8.82E-03
121GO:0043085: positive regulation of catalytic activity8.82E-03
122GO:0009682: induced systemic resistance8.82E-03
123GO:0008285: negative regulation of cell proliferation8.82E-03
124GO:0009640: photomorphogenesis9.55E-03
125GO:0010582: floral meristem determinacy9.70E-03
126GO:0006790: sulfur compound metabolic process9.70E-03
127GO:0006006: glucose metabolic process1.06E-02
128GO:0009767: photosynthetic electron transport chain1.06E-02
129GO:0005986: sucrose biosynthetic process1.06E-02
130GO:0030048: actin filament-based movement1.06E-02
131GO:0007015: actin filament organization1.16E-02
132GO:0010207: photosystem II assembly1.16E-02
133GO:0007031: peroxisome organization1.25E-02
134GO:0006071: glycerol metabolic process1.35E-02
135GO:0006508: proteolysis1.40E-02
136GO:0051017: actin filament bundle assembly1.46E-02
137GO:0019344: cysteine biosynthetic process1.46E-02
138GO:0035556: intracellular signal transduction1.54E-02
139GO:0010073: meristem maintenance1.56E-02
140GO:0006825: copper ion transport1.56E-02
141GO:0008299: isoprenoid biosynthetic process1.56E-02
142GO:0006418: tRNA aminoacylation for protein translation1.56E-02
143GO:0051260: protein homooligomerization1.67E-02
144GO:0031408: oxylipin biosynthetic process1.67E-02
145GO:0006366: transcription from RNA polymerase II promoter1.67E-02
146GO:2000022: regulation of jasmonic acid mediated signaling pathway1.78E-02
147GO:0040007: growth1.89E-02
148GO:0010227: floral organ abscission1.89E-02
149GO:0009693: ethylene biosynthetic process1.89E-02
150GO:0006817: phosphate ion transport2.01E-02
151GO:0070417: cellular response to cold2.13E-02
152GO:0042335: cuticle development2.25E-02
153GO:0080022: primary root development2.25E-02
154GO:0042391: regulation of membrane potential2.25E-02
155GO:0042631: cellular response to water deprivation2.25E-02
156GO:0006662: glycerol ether metabolic process2.37E-02
157GO:0010182: sugar mediated signaling pathway2.37E-02
158GO:0009741: response to brassinosteroid2.37E-02
159GO:0006520: cellular amino acid metabolic process2.37E-02
160GO:0009058: biosynthetic process2.43E-02
161GO:0042752: regulation of circadian rhythm2.50E-02
162GO:0009646: response to absence of light2.50E-02
163GO:0009753: response to jasmonic acid2.62E-02
164GO:0009791: post-embryonic development2.63E-02
165GO:0002229: defense response to oomycetes2.76E-02
166GO:0046686: response to cadmium ion2.81E-02
167GO:0030163: protein catabolic process3.02E-02
168GO:0009567: double fertilization forming a zygote and endosperm3.16E-02
169GO:0006464: cellular protein modification process3.16E-02
170GO:0071805: potassium ion transmembrane transport3.30E-02
171GO:0010228: vegetative to reproductive phase transition of meristem3.33E-02
172GO:0016126: sterol biosynthetic process3.58E-02
173GO:0010029: regulation of seed germination3.73E-02
174GO:0009816: defense response to bacterium, incompatible interaction3.73E-02
175GO:0042128: nitrate assimilation3.87E-02
176GO:0048573: photoperiodism, flowering4.02E-02
177GO:0006950: response to stress4.02E-02
178GO:0010411: xyloglucan metabolic process4.02E-02
179GO:0008219: cell death4.33E-02
180GO:0048481: plant ovule development4.33E-02
181GO:0000160: phosphorelay signal transduction system4.48E-02
182GO:0006811: ion transport4.64E-02
183GO:0007568: aging4.79E-02
184GO:0010119: regulation of stomatal movement4.79E-02
185GO:0006865: amino acid transport4.95E-02
RankGO TermAdjusted P value
1GO:0047710: bis(5'-adenosyl)-triphosphatase activity0.00E+00
2GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity0.00E+00
3GO:0046905: phytoene synthase activity0.00E+00
4GO:0047501: (+)-neomenthol dehydrogenase activity0.00E+00
5GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity0.00E+00
6GO:0015284: fructose uniporter activity0.00E+00
7GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
8GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
9GO:0050342: tocopherol O-methyltransferase activity0.00E+00
10GO:0016719: carotene 7,8-desaturase activity0.00E+00
11GO:0045436: lycopene beta cyclase activity0.00E+00
12GO:0043530: adenosine 5'-monophosphoramidase activity0.00E+00
13GO:0047504: (-)-menthol dehydrogenase activity0.00E+00
14GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
15GO:0015205: nucleobase transmembrane transporter activity0.00E+00
16GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity0.00E+00
17GO:0004180: carboxypeptidase activity1.27E-05
18GO:0016851: magnesium chelatase activity2.85E-05
19GO:0008106: alcohol dehydrogenase (NADP+) activity2.85E-05
20GO:0047627: adenylylsulfatase activity2.85E-05
21GO:0016491: oxidoreductase activity1.98E-04
22GO:0051996: squalene synthase activity2.77E-04
23GO:0030941: chloroplast targeting sequence binding2.77E-04
24GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity2.77E-04
25GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity2.77E-04
26GO:0016784: 3-mercaptopyruvate sulfurtransferase activity2.77E-04
27GO:0035671: enone reductase activity2.77E-04
28GO:0046906: tetrapyrrole binding2.77E-04
29GO:0004824: lysine-tRNA ligase activity2.77E-04
30GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity2.77E-04
31GO:0016783: sulfurtransferase activity2.77E-04
32GO:0008237: metallopeptidase activity4.66E-04
33GO:0003988: acetyl-CoA C-acyltransferase activity6.09E-04
34GO:0004450: isocitrate dehydrogenase (NADP+) activity6.09E-04
35GO:0004310: farnesyl-diphosphate farnesyltransferase activity6.09E-04
36GO:0016868: intramolecular transferase activity, phosphotransferases6.09E-04
37GO:0033741: adenylyl-sulfate reductase (glutathione) activity6.09E-04
38GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity6.09E-04
39GO:0004047: aminomethyltransferase activity6.09E-04
40GO:0033201: alpha-1,4-glucan synthase activity6.09E-04
41GO:0015173: aromatic amino acid transmembrane transporter activity6.09E-04
42GO:0050347: trans-octaprenyltranstransferase activity6.09E-04
43GO:0009973: adenylyl-sulfate reductase activity6.09E-04
44GO:1990269: RNA polymerase II C-terminal domain phosphoserine binding6.09E-04
45GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity6.09E-04
46GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity6.09E-04
47GO:0004614: phosphoglucomutase activity6.09E-04
48GO:0005353: fructose transmembrane transporter activity6.09E-04
49GO:0004046: aminoacylase activity6.09E-04
50GO:0004557: alpha-galactosidase activity9.88E-04
51GO:0003935: GTP cyclohydrolase II activity9.88E-04
52GO:0004781: sulfate adenylyltransferase (ATP) activity9.88E-04
53GO:0004096: catalase activity9.88E-04
54GO:0001076: transcription factor activity, RNA polymerase II transcription factor binding9.88E-04
55GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity9.88E-04
56GO:0004373: glycogen (starch) synthase activity9.88E-04
57GO:0003913: DNA photolyase activity9.88E-04
58GO:0003955: NAD(P)H dehydrogenase (quinone) activity9.88E-04
59GO:0032947: protein complex scaffold9.88E-04
60GO:0004848: ureidoglycolate hydrolase activity9.88E-04
61GO:0050307: sucrose-phosphate phosphatase activity9.88E-04
62GO:0009882: blue light photoreceptor activity1.41E-03
63GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.41E-03
64GO:0000254: C-4 methylsterol oxidase activity1.41E-03
65GO:0015175: neutral amino acid transmembrane transporter activity1.41E-03
66GO:0004792: thiosulfate sulfurtransferase activity1.41E-03
67GO:0004176: ATP-dependent peptidase activity1.54E-03
68GO:0042802: identical protein binding1.76E-03
69GO:0001053: plastid sigma factor activity1.89E-03
70GO:0051861: glycolipid binding1.89E-03
71GO:0016987: sigma factor activity1.89E-03
72GO:0009011: starch synthase activity1.89E-03
73GO:0008177: succinate dehydrogenase (ubiquinone) activity2.41E-03
74GO:0004623: phospholipase A2 activity2.41E-03
75GO:0010181: FMN binding2.70E-03
76GO:0004784: superoxide dismutase activity2.98E-03
77GO:0004709: MAP kinase kinase kinase activity2.98E-03
78GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity2.98E-03
79GO:0000293: ferric-chelate reductase activity2.98E-03
80GO:0048038: quinone binding3.09E-03
81GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.52E-03
82GO:0005242: inward rectifier potassium channel activity3.58E-03
83GO:0016621: cinnamoyl-CoA reductase activity4.23E-03
84GO:0009881: photoreceptor activity4.23E-03
85GO:0019899: enzyme binding4.23E-03
86GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity4.90E-03
87GO:0008236: serine-type peptidase activity5.55E-03
88GO:0046914: transition metal ion binding5.62E-03
89GO:0005375: copper ion transmembrane transporter activity5.62E-03
90GO:0008889: glycerophosphodiester phosphodiesterase activity6.37E-03
91GO:0000989: transcription factor activity, transcription factor binding6.37E-03
92GO:0071949: FAD binding6.37E-03
93GO:0004222: metalloendopeptidase activity6.43E-03
94GO:0016844: strictosidine synthase activity7.15E-03
95GO:0019904: protein domain specific binding8.82E-03
96GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.06E-02
97GO:0005315: inorganic phosphate transmembrane transporter activity1.06E-02
98GO:0031072: heat shock protein binding1.06E-02
99GO:0000155: phosphorelay sensor kinase activity1.06E-02
100GO:0015293: symporter activity1.07E-02
101GO:0000287: magnesium ion binding1.09E-02
102GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.16E-02
103GO:0016887: ATPase activity1.16E-02
104GO:0051119: sugar transmembrane transporter activity1.25E-02
105GO:0001046: core promoter sequence-specific DNA binding1.46E-02
106GO:0051536: iron-sulfur cluster binding1.46E-02
107GO:0005515: protein binding1.63E-02
108GO:0015035: protein disulfide oxidoreductase activity1.90E-02
109GO:0047134: protein-disulfide reductase activity2.13E-02
110GO:0004812: aminoacyl-tRNA ligase activity2.13E-02
111GO:0005249: voltage-gated potassium channel activity2.25E-02
112GO:0030551: cyclic nucleotide binding2.25E-02
113GO:0008080: N-acetyltransferase activity2.37E-02
114GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.37E-02
115GO:0004791: thioredoxin-disulfide reductase activity2.50E-02
116GO:0050662: coenzyme binding2.50E-02
117GO:0004197: cysteine-type endopeptidase activity2.89E-02
118GO:0016791: phosphatase activity3.16E-02
119GO:0008483: transaminase activity3.30E-02
120GO:0016413: O-acetyltransferase activity3.44E-02
121GO:0005506: iron ion binding3.93E-02
122GO:0030247: polysaccharide binding4.02E-02
123GO:0004721: phosphoprotein phosphatase activity4.02E-02
124GO:0030145: manganese ion binding4.79E-02
125GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding4.79E-02
126GO:0050897: cobalt ion binding4.79E-02
127GO:0016788: hydrolase activity, acting on ester bonds4.99E-02
RankGO TermAdjusted P value
1GO:0031313: extrinsic component of endosome membrane0.00E+00
2GO:0009507: chloroplast3.82E-21
3GO:0009535: chloroplast thylakoid membrane2.82E-06
4GO:0031969: chloroplast membrane1.73E-05
5GO:0005777: peroxisome7.23E-05
6GO:0031972: chloroplast intermembrane space2.77E-04
7GO:0000152: nuclear ubiquitin ligase complex2.77E-04
8GO:0031234: extrinsic component of cytoplasmic side of plasma membrane2.77E-04
9GO:0009570: chloroplast stroma3.46E-04
10GO:0010319: stromule4.66E-04
11GO:0045254: pyruvate dehydrogenase complex6.09E-04
12GO:0009509: chromoplast9.88E-04
13GO:0010007: magnesium chelatase complex9.88E-04
14GO:0031372: UBC13-MMS2 complex1.89E-03
15GO:0016593: Cdc73/Paf1 complex1.89E-03
16GO:0009526: plastid envelope1.89E-03
17GO:0005773: vacuole3.10E-03
18GO:0010287: plastoglobule3.96E-03
19GO:0031359: integral component of chloroplast outer membrane4.23E-03
20GO:0009501: amyloplast4.90E-03
21GO:0031982: vesicle4.90E-03
22GO:0009514: glyoxysome5.62E-03
23GO:0005779: integral component of peroxisomal membrane5.62E-03
24GO:0005759: mitochondrial matrix5.67E-03
25GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.37E-03
26GO:0016604: nuclear body7.15E-03
27GO:0005884: actin filament8.82E-03
28GO:0005764: lysosome1.16E-02
29GO:0005739: mitochondrion1.50E-02
30GO:0005747: mitochondrial respiratory chain complex I1.58E-02
31GO:0009532: plastid stroma1.67E-02
32GO:0009706: chloroplast inner membrane1.84E-02
33GO:0009534: chloroplast thylakoid1.89E-02
34GO:0009543: chloroplast thylakoid lumen2.31E-02
35GO:0005623: cell2.37E-02
36GO:0005778: peroxisomal membrane3.30E-02
37GO:0009941: chloroplast envelope3.36E-02
38GO:0009707: chloroplast outer membrane4.33E-02
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Gene type



Gene DE type





AT3G11900