co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G04330

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
2	GO:0002184: cytoplasmic translational termination	0.00E+00
3	GO:0030155: regulation of cell adhesion	0.00E+00
4	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
5	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
6	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
7	GO:0090627: plant epidermal cell differentiation	0.00E+00
8	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
9	GO:1905177: tracheary element differentiation	0.00E+00
10	GO:0015979: photosynthesis	8.91E-08
11	GO:0032544: plastid translation	2.55E-07
12	GO:0042254: ribosome biogenesis	2.60E-07
13	GO:0009735: response to cytokinin	3.01E-07
14	GO:0006412: translation	1.08E-06
15	GO:0009773: photosynthetic electron transport in photosystem I	1.30E-06
16	GO:0030388: fructose 1,6-bisphosphate metabolic process	5.76E-06
17	GO:0006000: fructose metabolic process	2.02E-05
18	GO:0010021: amylopectin biosynthetic process	7.90E-05
19	GO:0015995: chlorophyll biosynthetic process	1.25E-04
20	GO:0010190: cytochrome b6f complex assembly	1.78E-04
21	GO:0009955: adaxial/abaxial pattern specification	2.41E-04
22	GO:0000023: maltose metabolic process	3.57E-04
23	GO:0006431: methionyl-tRNA aminoacylation	3.57E-04
24	GO:0000025: maltose catabolic process	3.57E-04
25	GO:0005980: glycogen catabolic process	3.57E-04
26	GO:0080093: regulation of photorespiration	3.57E-04
27	GO:0031998: regulation of fatty acid beta-oxidation	3.57E-04
28	GO:0006002: fructose 6-phosphate metabolic process	4.81E-04
29	GO:0010206: photosystem II repair	5.76E-04
30	GO:0009409: response to cold	6.21E-04
31	GO:0005982: starch metabolic process	6.80E-04
32	GO:0010270: photosystem II oxygen evolving complex assembly	7.77E-04
33	GO:0005976: polysaccharide metabolic process	7.77E-04
34	GO:0018026: peptidyl-lysine monomethylation	7.77E-04
35	GO:0090342: regulation of cell aging	7.77E-04
36	GO:0031648: protein destabilization	7.77E-04
37	GO:0010027: thylakoid membrane organization	8.65E-04
38	GO:0005983: starch catabolic process	1.04E-03
39	GO:0005986: sucrose biosynthetic process	1.18E-03
40	GO:0006094: gluconeogenesis	1.18E-03
41	GO:0009817: defense response to fungus, incompatible interaction	1.20E-03
42	GO:0048281: inflorescence morphogenesis	1.26E-03
43	GO:0006518: peptide metabolic process	1.26E-03
44	GO:0010623: programmed cell death involved in cell development	1.26E-03
45	GO:0009266: response to temperature stimulus	1.33E-03
46	GO:0010148: transpiration	1.81E-03
47	GO:0010731: protein glutathionylation	1.81E-03
48	GO:0006424: glutamyl-tRNA aminoacylation	1.81E-03
49	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.81E-03
50	GO:1902358: sulfate transmembrane transport	1.81E-03
51	GO:0006289: nucleotide-excision repair	1.83E-03
52	GO:0006418: tRNA aminoacylation for protein translation	2.03E-03
53	GO:0061077: chaperone-mediated protein folding	2.23E-03
54	GO:0010017: red or far-red light signaling pathway	2.43E-03
55	GO:0015689: molybdate ion transport	2.44E-03
56	GO:0051322: anaphase	2.44E-03
57	GO:0009765: photosynthesis, light harvesting	2.44E-03
58	GO:0010600: regulation of auxin biosynthetic process	2.44E-03
59	GO:2000122: negative regulation of stomatal complex development	2.44E-03
60	GO:0015846: polyamine transport	2.44E-03
61	GO:0010508: positive regulation of autophagy	2.44E-03
62	GO:0051205: protein insertion into membrane	2.44E-03
63	GO:0010037: response to carbon dioxide	2.44E-03
64	GO:0006808: regulation of nitrogen utilization	2.44E-03
65	GO:0015976: carbon utilization	2.44E-03
66	GO:0006284: base-excision repair	2.89E-03
67	GO:0016120: carotene biosynthetic process	3.11E-03
68	GO:0006656: phosphatidylcholine biosynthetic process	3.11E-03
69	GO:0032543: mitochondrial translation	3.11E-03
70	GO:0045038: protein import into chloroplast thylakoid membrane	3.11E-03
71	GO:0006097: glyoxylate cycle	3.11E-03
72	GO:0006461: protein complex assembly	3.11E-03
73	GO:0000470: maturation of LSU-rRNA	3.85E-03
74	GO:0006828: manganese ion transport	3.85E-03
75	GO:0009913: epidermal cell differentiation	3.85E-03
76	GO:0019252: starch biosynthetic process	4.20E-03
77	GO:0009658: chloroplast organization	4.22E-03
78	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	4.64E-03
79	GO:0042026: protein refolding	4.64E-03
80	GO:1901259: chloroplast rRNA processing	4.64E-03
81	GO:0006458: 'de novo' protein folding	4.64E-03
82	GO:0030488: tRNA methylation	4.64E-03
83	GO:0030163: protein catabolic process	5.12E-03
84	GO:0070370: cellular heat acclimation	5.48E-03
85	GO:0008272: sulfate transport	5.48E-03
86	GO:0009645: response to low light intensity stimulus	5.48E-03
87	GO:0010103: stomatal complex morphogenesis	5.48E-03
88	GO:0010161: red light signaling pathway	5.48E-03
89	GO:0010928: regulation of auxin mediated signaling pathway	6.37E-03
90	GO:0005978: glycogen biosynthetic process	6.37E-03
91	GO:0030091: protein repair	6.37E-03
92	GO:0009704: de-etiolation	6.37E-03
93	GO:0009231: riboflavin biosynthetic process	6.37E-03
94	GO:0001558: regulation of cell growth	7.30E-03
95	GO:0009657: plastid organization	7.30E-03
96	GO:0017004: cytochrome complex assembly	7.30E-03
97	GO:0009058: biosynthetic process	7.33E-03
98	GO:0051865: protein autoubiquitination	8.29E-03
99	GO:0006783: heme biosynthetic process	8.29E-03
100	GO:0048481: plant ovule development	8.51E-03
101	GO:0042761: very long-chain fatty acid biosynthetic process	9.31E-03
102	GO:0009631: cold acclimation	9.85E-03
103	GO:0031627: telomeric loop formation	1.04E-02
104	GO:0006782: protoporphyrinogen IX biosynthetic process	1.04E-02
105	GO:0043069: negative regulation of programmed cell death	1.04E-02
106	GO:0048829: root cap development	1.04E-02
107	GO:0006949: syncytium formation	1.04E-02
108	GO:0006816: calcium ion transport	1.15E-02
109	GO:0009073: aromatic amino acid family biosynthetic process	1.15E-02
110	GO:0006415: translational termination	1.15E-02
111	GO:0009750: response to fructose	1.15E-02
112	GO:0008152: metabolic process	1.23E-02
113	GO:0015706: nitrate transport	1.27E-02
114	GO:0006631: fatty acid metabolic process	1.29E-02
115	GO:0010102: lateral root morphogenesis	1.39E-02
116	GO:0010628: positive regulation of gene expression	1.39E-02
117	GO:0006108: malate metabolic process	1.39E-02
118	GO:0010114: response to red light	1.40E-02
119	GO:0019253: reductive pentose-phosphate cycle	1.51E-02
120	GO:0005985: sucrose metabolic process	1.64E-02
121	GO:0009664: plant-type cell wall organization	1.76E-02
122	GO:0019762: glucosinolate catabolic process	1.77E-02
123	GO:0010025: wax biosynthetic process	1.77E-02
124	GO:0000027: ribosomal large subunit assembly	1.90E-02
125	GO:0009944: polarity specification of adaxial/abaxial axis	1.90E-02
126	GO:0005975: carbohydrate metabolic process	1.93E-02
127	GO:0051302: regulation of cell division	2.04E-02
128	GO:0007017: microtubule-based process	2.04E-02
129	GO:0009768: photosynthesis, light harvesting in photosystem I	2.04E-02
130	GO:0019915: lipid storage	2.18E-02
131	GO:0003333: amino acid transmembrane transport	2.18E-02
132	GO:0030245: cellulose catabolic process	2.33E-02
133	GO:0016226: iron-sulfur cluster assembly	2.33E-02
134	GO:0035428: hexose transmembrane transport	2.33E-02
135	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.33E-02
136	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.48E-02
137	GO:0009686: gibberellin biosynthetic process	2.48E-02
138	GO:0001944: vasculature development	2.48E-02
139	GO:0042742: defense response to bacterium	2.53E-02
140	GO:0055114: oxidation-reduction process	2.55E-02
141	GO:0006979: response to oxidative stress	2.56E-02
142	GO:0010089: xylem development	2.63E-02
143	GO:0016117: carotenoid biosynthetic process	2.79E-02
144	GO:0070417: cellular response to cold	2.79E-02
145	GO:0042335: cuticle development	2.95E-02
146	GO:0046323: glucose import	3.11E-02
147	GO:0048825: cotyledon development	3.44E-02
148	GO:0000302: response to reactive oxygen species	3.61E-02
149	GO:0006281: DNA repair	3.83E-02
150	GO:0006629: lipid metabolic process	3.83E-02
151	GO:0009790: embryo development	3.92E-02
152	GO:1901657: glycosyl compound metabolic process	3.96E-02
153	GO:0019760: glucosinolate metabolic process	4.14E-02
154	GO:0009828: plant-type cell wall loosening	4.14E-02
155	GO:0006310: DNA recombination	4.14E-02
156	GO:0000910: cytokinesis	4.50E-02
157	GO:0007623: circadian rhythm	4.63E-02
158	GO:0006810: transport	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
2	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
3	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
4	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
5	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
6	GO:0016166: phytoene dehydrogenase activity	0.00E+00
7	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
8	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
9	GO:0009899: ent-kaurene synthase activity	0.00E+00
10	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
11	GO:0019843: rRNA binding	1.61E-11
12	GO:0003735: structural constituent of ribosome	4.98E-08
13	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	5.76E-06
14	GO:0016851: magnesium chelatase activity	4.45E-05
15	GO:0005528: FK506 binding	1.59E-04
16	GO:2001070: starch binding	1.78E-04
17	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	3.57E-04
18	GO:0008184: glycogen phosphorylase activity	3.57E-04
19	GO:0004105: choline-phosphate cytidylyltransferase activity	3.57E-04
20	GO:0080132: fatty acid alpha-hydroxylase activity	3.57E-04
21	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	3.57E-04
22	GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity	3.57E-04
23	GO:0004856: xylulokinase activity	3.57E-04
24	GO:0004134: 4-alpha-glucanotransferase activity	3.57E-04
25	GO:0004645: phosphorylase activity	3.57E-04
26	GO:0004853: uroporphyrinogen decarboxylase activity	3.57E-04
27	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.57E-04
28	GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity	3.57E-04
29	GO:0004825: methionine-tRNA ligase activity	3.57E-04
30	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.41E-04
31	GO:0033201: alpha-1,4-glucan synthase activity	7.77E-04
32	GO:0018708: thiol S-methyltransferase activity	7.77E-04
33	GO:0003844: 1,4-alpha-glucan branching enzyme activity	7.77E-04
34	GO:0008967: phosphoglycolate phosphatase activity	7.77E-04
35	GO:0010297: heteropolysaccharide binding	7.77E-04
36	GO:0047216: inositol 3-alpha-galactosyltransferase activity	7.77E-04
37	GO:0047372: acylglycerol lipase activity	9.13E-04
38	GO:0044183: protein binding involved in protein folding	9.13E-04
39	GO:0004324: ferredoxin-NADP+ reductase activity	1.26E-03
40	GO:0043169: cation binding	1.26E-03
41	GO:0004373: glycogen (starch) synthase activity	1.26E-03
42	GO:0017150: tRNA dihydrouridine synthase activity	1.26E-03
43	GO:0002161: aminoacyl-tRNA editing activity	1.26E-03
44	GO:0017108: 5'-flap endonuclease activity	1.26E-03
45	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.26E-03
46	GO:0015203: polyamine transmembrane transporter activity	1.81E-03
47	GO:0016149: translation release factor activity, codon specific	1.81E-03
48	GO:0043023: ribosomal large subunit binding	1.81E-03
49	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.44E-03
50	GO:0019104: DNA N-glycosylase activity	2.44E-03
51	GO:0019199: transmembrane receptor protein kinase activity	2.44E-03
52	GO:0015098: molybdate ion transmembrane transporter activity	2.44E-03
53	GO:0009011: starch synthase activity	2.44E-03
54	GO:0042277: peptide binding	2.44E-03
55	GO:0016279: protein-lysine N-methyltransferase activity	2.44E-03
56	GO:0008725: DNA-3-methyladenine glycosylase activity	3.11E-03
57	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.11E-03
58	GO:0003959: NADPH dehydrogenase activity	3.11E-03
59	GO:0004040: amidase activity	3.11E-03
60	GO:0004812: aminoacyl-tRNA ligase activity	3.13E-03
61	GO:0004130: cytochrome-c peroxidase activity	3.85E-03
62	GO:0016615: malate dehydrogenase activity	3.85E-03
63	GO:0048038: quinone binding	4.50E-03
64	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	4.64E-03
65	GO:0030060: L-malate dehydrogenase activity	4.64E-03
66	GO:0004602: glutathione peroxidase activity	4.64E-03
67	GO:0016491: oxidoreductase activity	5.17E-03
68	GO:0016209: antioxidant activity	6.37E-03
69	GO:0004033: aldo-keto reductase (NADP) activity	6.37E-03
70	GO:0008271: secondary active sulfate transmembrane transporter activity	7.30E-03
71	GO:0008173: RNA methyltransferase activity	7.30E-03
72	GO:0004252: serine-type endopeptidase activity	7.83E-03
73	GO:0008236: serine-type peptidase activity	8.09E-03
74	GO:0003747: translation release factor activity	8.29E-03
75	GO:0015174: basic amino acid transmembrane transporter activity	9.31E-03
76	GO:0005384: manganese ion transmembrane transporter activity	9.31E-03
77	GO:0015112: nitrate transmembrane transporter activity	9.31E-03
78	GO:0004222: metalloendopeptidase activity	9.39E-03
79	GO:0030234: enzyme regulator activity	1.04E-02
80	GO:0003691: double-stranded telomeric DNA binding	1.15E-02
81	GO:0015386: potassium:proton antiporter activity	1.15E-02
82	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.22E-02
83	GO:0015116: sulfate transmembrane transporter activity	1.27E-02
84	GO:0000049: tRNA binding	1.27E-02
85	GO:0004565: beta-galactosidase activity	1.39E-02
86	GO:0004022: alcohol dehydrogenase (NAD) activity	1.39E-02
87	GO:0004089: carbonate dehydratase activity	1.39E-02
88	GO:0015095: magnesium ion transmembrane transporter activity	1.39E-02
89	GO:0008266: poly(U) RNA binding	1.51E-02
90	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.51E-02
91	GO:0015293: symporter activity	1.57E-02
92	GO:0004190: aspartic-type endopeptidase activity	1.64E-02
93	GO:0031409: pigment binding	1.77E-02
94	GO:0051536: iron-sulfur cluster binding	1.90E-02
95	GO:0015079: potassium ion transmembrane transporter activity	2.04E-02
96	GO:0008810: cellulase activity	2.48E-02
97	GO:0003713: transcription coactivator activity	3.11E-02
98	GO:0005355: glucose transmembrane transporter activity	3.27E-02
99	GO:0004518: nuclease activity	3.78E-02
100	GO:0000156: phosphorelay response regulator activity	3.96E-02
101	GO:0003684: damaged DNA binding	4.14E-02
102	GO:0008237: metallopeptidase activity	4.32E-02
103	GO:0005200: structural constituent of cytoskeleton	4.32E-02
104	GO:0016168: chlorophyll binding	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
3	GO:0033557: Slx1-Slx4 complex	0.00E+00
4	GO:0044391: ribosomal subunit	0.00E+00
5	GO:0042579: microbody	0.00E+00
6	GO:0009507: chloroplast	1.67E-42
7	GO:0009570: chloroplast stroma	1.23E-37
8	GO:0009941: chloroplast envelope	4.40E-30
9	GO:0009535: chloroplast thylakoid membrane	3.14E-26
10	GO:0009534: chloroplast thylakoid	3.97E-24
11	GO:0009579: thylakoid	3.06E-15
12	GO:0005840: ribosome	5.75E-10
13	GO:0009543: chloroplast thylakoid lumen	8.21E-09
14	GO:0031977: thylakoid lumen	1.83E-06
15	GO:0010007: magnesium chelatase complex	2.02E-05
16	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.41E-05
17	GO:0010287: plastoglobule	2.14E-04
18	GO:0009533: chloroplast stromal thylakoid	3.12E-04
19	GO:0009501: amyloplast	3.92E-04
20	GO:0009295: nucleoid	7.47E-04
21	GO:0030093: chloroplast photosystem I	7.77E-04
22	GO:0031357: integral component of chloroplast inner membrane	7.77E-04
23	GO:0043036: starch grain	7.77E-04
24	GO:0009508: plastid chromosome	1.18E-03
25	GO:0009509: chromoplast	1.26E-03
26	GO:0030095: chloroplast photosystem II	1.33E-03
27	GO:0031969: chloroplast membrane	1.38E-03
28	GO:0042651: thylakoid membrane	2.03E-03
29	GO:0055035: plastid thylakoid membrane	3.11E-03
30	GO:0009523: photosystem II	4.20E-03
31	GO:0009536: plastid	4.43E-03
32	GO:0010319: stromule	5.80E-03
33	GO:0009538: photosystem I reaction center	6.37E-03
34	GO:0016020: membrane	6.48E-03
35	GO:0000783: nuclear telomere cap complex	7.30E-03
36	GO:0042644: chloroplast nucleoid	8.29E-03
37	GO:0045298: tubulin complex	8.29E-03
38	GO:0005763: mitochondrial small ribosomal subunit	8.29E-03
39	GO:0000311: plastid large ribosomal subunit	1.27E-02
40	GO:0009574: preprophase band	1.39E-02
41	GO:0030076: light-harvesting complex	1.64E-02
42	GO:0048046: apoplast	1.88E-02
43	GO:0009654: photosystem II oxygen evolving complex	2.04E-02
44	GO:0015935: small ribosomal subunit	2.18E-02
45	GO:0022625: cytosolic large ribosomal subunit	2.52E-02
46	GO:0009706: chloroplast inner membrane	2.69E-02
47	GO:0009522: photosystem I	3.27E-02
48	GO:0019898: extrinsic component of membrane	3.44E-02