co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G04250

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009715: chalcone biosynthetic process	0.00E+00
2	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
3	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
4	GO:0015882: L-ascorbic acid transport	0.00E+00
5	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
6	GO:0010966: regulation of phosphate transport	0.00E+00
7	GO:0015979: photosynthesis	3.36E-13
8	GO:0009768: photosynthesis, light harvesting in photosystem I	4.46E-12
9	GO:0018298: protein-chromophore linkage	2.91E-11
10	GO:0009769: photosynthesis, light harvesting in photosystem II	1.72E-08
11	GO:0010027: thylakoid membrane organization	2.40E-08
12	GO:0009644: response to high light intensity	3.62E-07
13	GO:0010196: nonphotochemical quenching	2.45E-06
14	GO:0009645: response to low light intensity stimulus	2.45E-06
15	GO:0010218: response to far red light	2.47E-06
16	GO:0010114: response to red light	6.86E-06
17	GO:0010206: photosystem II repair	7.65E-06
18	GO:0090391: granum assembly	8.46E-06
19	GO:0009416: response to light stimulus	1.64E-05
20	GO:0009773: photosynthetic electron transport in photosystem I	1.77E-05
21	GO:0010207: photosystem II assembly	3.39E-05
22	GO:0006021: inositol biosynthetic process	3.53E-05
23	GO:0009637: response to blue light	6.67E-05
24	GO:0009269: response to desiccation	7.78E-05
25	GO:0042549: photosystem II stabilization	8.30E-05
26	GO:0009642: response to light intensity	1.94E-04
27	GO:0043953: protein transport by the Tat complex	2.22E-04
28	GO:0000481: maturation of 5S rRNA	2.22E-04
29	GO:0065002: intracellular protein transmembrane transport	2.22E-04
30	GO:0043686: co-translational protein modification	2.22E-04
31	GO:0043007: maintenance of rDNA	2.22E-04
32	GO:0010028: xanthophyll cycle	2.22E-04
33	GO:0034337: RNA folding	2.22E-04
34	GO:0006098: pentose-phosphate shunt	2.91E-04
35	GO:0010205: photoinhibition	3.46E-04
36	GO:0019684: photosynthesis, light reaction	4.69E-04
37	GO:0043085: positive regulation of catalytic activity	4.69E-04
38	GO:0035304: regulation of protein dephosphorylation	4.95E-04
39	GO:0009629: response to gravity	4.95E-04
40	GO:0018026: peptidyl-lysine monomethylation	4.95E-04
41	GO:0006729: tetrahydrobiopterin biosynthetic process	4.95E-04
42	GO:0080181: lateral root branching	4.95E-04
43	GO:0005983: starch catabolic process	5.37E-04
44	GO:0045454: cell redox homeostasis	5.60E-04
45	GO:0006094: gluconeogenesis	6.09E-04
46	GO:0034599: cellular response to oxidative stress	7.26E-04
47	GO:0090351: seedling development	7.67E-04
48	GO:0071492: cellular response to UV-A	8.05E-04
49	GO:0005977: glycogen metabolic process	8.05E-04
50	GO:1902448: positive regulation of shade avoidance	8.05E-04
51	GO:0042989: sequestering of actin monomers	1.15E-03
52	GO:0042823: pyridoxal phosphate biosynthetic process	1.15E-03
53	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.15E-03
54	GO:0006020: inositol metabolic process	1.15E-03
55	GO:0071484: cellular response to light intensity	1.15E-03
56	GO:0009658: chloroplast organization	1.46E-03
57	GO:0015994: chlorophyll metabolic process	1.53E-03
58	GO:0022622: root system development	1.53E-03
59	GO:0006552: leucine catabolic process	1.53E-03
60	GO:0030104: water homeostasis	1.53E-03
61	GO:0006546: glycine catabolic process	1.53E-03
62	GO:0010021: amylopectin biosynthetic process	1.53E-03
63	GO:0015976: carbon utilization	1.53E-03
64	GO:0071486: cellular response to high light intensity	1.53E-03
65	GO:0019464: glycine decarboxylation via glycine cleavage system	1.53E-03
66	GO:0009765: photosynthesis, light harvesting	1.53E-03
67	GO:0006109: regulation of carbohydrate metabolic process	1.53E-03
68	GO:0006662: glycerol ether metabolic process	1.84E-03
69	GO:0006656: phosphatidylcholine biosynthetic process	1.95E-03
70	GO:0016558: protein import into peroxisome matrix	1.95E-03
71	GO:0030041: actin filament polymerization	1.95E-03
72	GO:0010236: plastoquinone biosynthetic process	1.95E-03
73	GO:0031365: N-terminal protein amino acid modification	1.95E-03
74	GO:0035434: copper ion transmembrane transport	1.95E-03
75	GO:0042793: transcription from plastid promoter	2.40E-03
76	GO:0046855: inositol phosphate dephosphorylation	2.40E-03
77	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	2.40E-03
78	GO:0009635: response to herbicide	2.40E-03
79	GO:0050665: hydrogen peroxide biosynthetic process	2.40E-03
80	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.40E-03
81	GO:0010189: vitamin E biosynthetic process	2.89E-03
82	GO:0009854: oxidative photosynthetic carbon pathway	2.89E-03
83	GO:0071470: cellular response to osmotic stress	2.89E-03
84	GO:0022904: respiratory electron transport chain	3.40E-03
85	GO:0051510: regulation of unidimensional cell growth	3.40E-03
86	GO:0032880: regulation of protein localization	3.40E-03
87	GO:0071446: cellular response to salicylic acid stimulus	3.40E-03
88	GO:0015995: chlorophyll biosynthetic process	3.84E-03
89	GO:0030091: protein repair	3.94E-03
90	GO:0032508: DNA duplex unwinding	3.94E-03
91	GO:0031540: regulation of anthocyanin biosynthetic process	3.94E-03
92	GO:0009231: riboflavin biosynthetic process	3.94E-03
93	GO:0016311: dephosphorylation	4.04E-03
94	GO:0055114: oxidation-reduction process	4.21E-03
95	GO:0009813: flavonoid biosynthetic process	4.46E-03
96	GO:0017004: cytochrome complex assembly	4.51E-03
97	GO:2000031: regulation of salicylic acid mediated signaling pathway	4.51E-03
98	GO:0048527: lateral root development	4.91E-03
99	GO:0090333: regulation of stomatal closure	5.11E-03
100	GO:0098656: anion transmembrane transport	5.11E-03
101	GO:0006779: porphyrin-containing compound biosynthetic process	5.74E-03
102	GO:0006782: protoporphyrinogen IX biosynthetic process	6.38E-03
103	GO:0006913: nucleocytoplasmic transport	7.06E-03
104	GO:0072593: reactive oxygen species metabolic process	7.06E-03
105	GO:0009073: aromatic amino acid family biosynthetic process	7.06E-03
106	GO:0006790: sulfur compound metabolic process	7.76E-03
107	GO:2000012: regulation of auxin polar transport	8.48E-03
108	GO:0006302: double-strand break repair	9.23E-03
109	GO:0010224: response to UV-B	9.69E-03
110	GO:0010030: positive regulation of seed germination	1.00E-02
111	GO:0046854: phosphatidylinositol phosphorylation	1.00E-02
112	GO:0006096: glycolytic process	1.11E-02
113	GO:0007010: cytoskeleton organization	1.16E-02
114	GO:0006825: copper ion transport	1.24E-02
115	GO:0009409: response to cold	1.29E-02
116	GO:0051321: meiotic cell cycle	1.33E-02
117	GO:0071215: cellular response to abscisic acid stimulus	1.51E-02
118	GO:0032259: methylation	1.52E-02
119	GO:0005975: carbohydrate metabolic process	1.57E-02
120	GO:0009561: megagametogenesis	1.60E-02
121	GO:0046686: response to cadmium ion	1.64E-02
122	GO:0070417: cellular response to cold	1.70E-02
123	GO:0008284: positive regulation of cell proliferation	1.70E-02
124	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.70E-02
125	GO:0042631: cellular response to water deprivation	1.79E-02
126	GO:0009845: seed germination	1.81E-02
127	GO:0009958: positive gravitropism	1.89E-02
128	GO:0006814: sodium ion transport	1.99E-02
129	GO:0009646: response to absence of light	1.99E-02
130	GO:0009791: post-embryonic development	2.09E-02
131	GO:0019252: starch biosynthetic process	2.09E-02
132	GO:0008654: phospholipid biosynthetic process	2.09E-02
133	GO:0055072: iron ion homeostasis	2.09E-02
134	GO:0071554: cell wall organization or biogenesis	2.19E-02
135	GO:0006635: fatty acid beta-oxidation	2.19E-02
136	GO:0048235: pollen sperm cell differentiation	2.30E-02
137	GO:0042742: defense response to bacterium	2.52E-02
138	GO:0009567: double fertilization forming a zygote and endosperm	2.52E-02
139	GO:0006979: response to oxidative stress	2.55E-02
140	GO:0051607: defense response to virus	2.74E-02
141	GO:0009735: response to cytokinin	2.94E-02
142	GO:0010411: xyloglucan metabolic process	3.20E-02
143	GO:0048573: photoperiodism, flowering	3.20E-02
144	GO:0009817: defense response to fungus, incompatible interaction	3.45E-02
145	GO:0006811: ion transport	3.70E-02
146	GO:0010119: regulation of stomatal movement	3.82E-02
147	GO:0009867: jasmonic acid mediated signaling pathway	4.08E-02
148	GO:0006810: transport	4.41E-02
149	GO:0080167: response to karrikin	4.42E-02
150	GO:0042542: response to hydrogen peroxide	4.74E-02
151	GO:0009640: photomorphogenesis	4.88E-02
152	GO:0009926: auxin polar transport	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
2	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
3	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
4	GO:0042623: ATPase activity, coupled	0.00E+00
5	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
6	GO:0048039: ubiquinone binding	0.00E+00
7	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
8	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
9	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
10	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
11	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
12	GO:0031409: pigment binding	1.87E-12
13	GO:0016168: chlorophyll binding	1.15E-11
14	GO:0004462: lactoylglutathione lyase activity	8.62E-07
15	GO:0004332: fructose-bisphosphate aldolase activity	8.30E-05
16	GO:0050308: sugar-phosphatase activity	2.22E-04
17	GO:0010242: oxygen evolving activity	2.22E-04
18	GO:0042586: peptide deformylase activity	2.22E-04
19	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	2.22E-04
20	GO:0019203: carbohydrate phosphatase activity	2.22E-04
21	GO:0045486: naringenin 3-dioxygenase activity	2.22E-04
22	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.22E-04
23	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	2.22E-04
24	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	2.22E-04
25	GO:0016491: oxidoreductase activity	3.15E-04
26	GO:0015035: protein disulfide oxidoreductase activity	3.40E-04
27	GO:0008047: enzyme activator activity	4.05E-04
28	GO:0008934: inositol monophosphate 1-phosphatase activity	4.95E-04
29	GO:0052833: inositol monophosphate 4-phosphatase activity	4.95E-04
30	GO:0004512: inositol-3-phosphate synthase activity	4.95E-04
31	GO:0019172: glyoxalase III activity	4.95E-04
32	GO:0019156: isoamylase activity	4.95E-04
33	GO:0000234: phosphoethanolamine N-methyltransferase activity	4.95E-04
34	GO:0047746: chlorophyllase activity	4.95E-04
35	GO:0009977: proton motive force dependent protein transmembrane transporter activity	4.95E-04
36	GO:0052832: inositol monophosphate 3-phosphatase activity	4.95E-04
37	GO:0005315: inorganic phosphate transmembrane transporter activity	6.09E-04
38	GO:0031072: heat shock protein binding	6.09E-04
39	GO:0008266: poly(U) RNA binding	6.86E-04
40	GO:0003913: DNA photolyase activity	8.05E-04
41	GO:0046872: metal ion binding	8.77E-04
42	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.15E-03
43	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.15E-03
44	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.15E-03
45	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.15E-03
46	GO:0008514: organic anion transmembrane transporter activity	1.46E-03
47	GO:0008891: glycolate oxidase activity	1.53E-03
48	GO:0016279: protein-lysine N-methyltransferase activity	1.53E-03
49	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.53E-03
50	GO:0047134: protein-disulfide reductase activity	1.58E-03
51	GO:0003785: actin monomer binding	1.95E-03
52	GO:0004791: thioredoxin-disulfide reductase activity	1.97E-03
53	GO:0000293: ferric-chelate reductase activity	2.40E-03
54	GO:0004556: alpha-amylase activity	2.40E-03
55	GO:2001070: starch binding	2.40E-03
56	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.57E-03
57	GO:0019843: rRNA binding	2.83E-03
58	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.89E-03
59	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.89E-03
60	GO:0009881: photoreceptor activity	3.40E-03
61	GO:0004033: aldo-keto reductase (NADP) activity	3.94E-03
62	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.04E-03
63	GO:0047196: long-chain-alcohol O-fatty-acyltransferase activity	4.51E-03
64	GO:0103095: wax ester synthase activity	4.51E-03
65	GO:0005375: copper ion transmembrane transporter activity	4.51E-03
66	GO:0008135: translation factor activity, RNA binding	4.51E-03
67	GO:0030145: manganese ion binding	4.91E-03
68	GO:0071949: FAD binding	5.11E-03
69	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	5.11E-03
70	GO:0003993: acid phosphatase activity	5.62E-03
71	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	5.74E-03
72	GO:0005198: structural molecule activity	7.80E-03
73	GO:0004565: beta-galactosidase activity	8.48E-03
74	GO:0004089: carbonate dehydratase activity	8.48E-03
75	GO:0008083: growth factor activity	9.23E-03
76	GO:0003712: transcription cofactor activity	1.00E-02
77	GO:0031418: L-ascorbic acid binding	1.16E-02
78	GO:0004857: enzyme inhibitor activity	1.16E-02
79	GO:0008408: 3'-5' exonuclease activity	1.33E-02
80	GO:0051082: unfolded protein binding	1.34E-02
81	GO:0022891: substrate-specific transmembrane transporter activity	1.51E-02
82	GO:0003756: protein disulfide isomerase activity	1.60E-02
83	GO:0009055: electron carrier activity	1.75E-02
84	GO:0010181: FMN binding	1.99E-02
85	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.19E-02
86	GO:0048038: quinone binding	2.19E-02
87	GO:0008483: transaminase activity	2.63E-02
88	GO:0016413: O-acetyltransferase activity	2.74E-02
89	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.20E-02
90	GO:0000287: magnesium ion binding	3.51E-02
91	GO:0003746: translation elongation factor activity	4.08E-02
92	GO:0051539: 4 iron, 4 sulfur cluster binding	4.47E-02
93	GO:0052689: carboxylic ester hydrolase activity	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0010368: chloroplast isoamylase complex	0.00E+00
3	GO:0009515: granal stacked thylakoid	0.00E+00
4	GO:0009349: riboflavin synthase complex	0.00E+00
5	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
6	GO:0043235: receptor complex	0.00E+00
7	GO:0009534: chloroplast thylakoid	1.62E-37
8	GO:0009507: chloroplast	2.73E-33
9	GO:0009535: chloroplast thylakoid membrane	1.01E-32
10	GO:0009579: thylakoid	9.01E-21
11	GO:0009941: chloroplast envelope	2.09E-20
12	GO:0010287: plastoglobule	3.34E-18
13	GO:0009570: chloroplast stroma	1.82E-15
14	GO:0009522: photosystem I	6.81E-11
15	GO:0009523: photosystem II	9.02E-11
16	GO:0030095: chloroplast photosystem II	9.20E-09
17	GO:0030076: light-harvesting complex	1.30E-08
18	GO:0009517: PSII associated light-harvesting complex II	1.94E-07
19	GO:0009543: chloroplast thylakoid lumen	2.22E-07
20	GO:0009538: photosystem I reaction center	3.74E-06
21	GO:0031977: thylakoid lumen	5.57E-06
22	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	7.65E-06
23	GO:0009654: photosystem II oxygen evolving complex	6.72E-05
24	GO:0048046: apoplast	1.31E-04
25	GO:0019898: extrinsic component of membrane	1.99E-04
26	GO:0000791: euchromatin	2.22E-04
27	GO:0009783: photosystem II antenna complex	2.22E-04
28	GO:0031361: integral component of thylakoid membrane	2.22E-04
29	GO:0030870: Mre11 complex	4.95E-04
30	GO:0043036: starch grain	4.95E-04
31	GO:0000427: plastid-encoded plastid RNA polymerase complex	4.95E-04
32	GO:0033281: TAT protein transport complex	8.05E-04
33	GO:0005960: glycine cleavage complex	1.15E-03
34	GO:0000795: synaptonemal complex	1.95E-03
35	GO:0009706: chloroplast inner membrane	2.13E-03
36	GO:0009533: chloroplast stromal thylakoid	3.40E-03
37	GO:0031305: integral component of mitochondrial inner membrane	3.94E-03
38	GO:0005740: mitochondrial envelope	6.38E-03
39	GO:0032040: small-subunit processome	7.76E-03
40	GO:0005938: cell cortex	8.48E-03
41	GO:0009508: plastid chromosome	8.48E-03
42	GO:0042651: thylakoid membrane	1.24E-02
43	GO:0016021: integral component of membrane	1.25E-02
44	GO:0015629: actin cytoskeleton	1.51E-02
45	GO:0005623: cell	1.72E-02
46	GO:0000785: chromatin	2.30E-02
47	GO:0009295: nucleoid	2.63E-02
48	GO:0005778: peroxisomal membrane	2.63E-02
49	GO:0022626: cytosolic ribosome	3.11E-02
50	GO:0015934: large ribosomal subunit	3.82E-02