Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G04190

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0000740: nuclear membrane fusion0.00E+00
2GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
3GO:0044843: cell cycle G1/S phase transition0.00E+00
4GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
5GO:0032211: negative regulation of telomere maintenance via telomerase0.00E+00
6GO:0000494: box C/D snoRNA 3'-end processing0.00E+00
7GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
8GO:1990258: histone glutamine methylation0.00E+00
9GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
10GO:0006412: translation1.07E-154
11GO:0042254: ribosome biogenesis8.12E-51
12GO:0000027: ribosomal large subunit assembly2.11E-11
13GO:0006626: protein targeting to mitochondrion1.09E-08
14GO:0000028: ribosomal small subunit assembly1.52E-08
15GO:0000398: mRNA splicing, via spliceosome4.02E-06
16GO:0000387: spliceosomal snRNP assembly4.86E-06
17GO:0045041: protein import into mitochondrial intermembrane space1.89E-05
18GO:0009955: adaxial/abaxial pattern specification2.45E-05
19GO:0006458: 'de novo' protein folding2.45E-05
20GO:0030150: protein import into mitochondrial matrix4.58E-05
21GO:0002181: cytoplasmic translation6.18E-05
22GO:1902626: assembly of large subunit precursor of preribosome6.18E-05
23GO:0061077: chaperone-mediated protein folding6.72E-05
24GO:0009735: response to cytokinin1.11E-04
25GO:0031167: rRNA methylation3.31E-04
26GO:0043248: proteasome assembly4.62E-04
27GO:0045040: protein import into mitochondrial outer membrane4.62E-04
28GO:0006364: rRNA processing4.63E-04
29GO:0000245: spliceosomal complex assembly6.11E-04
30GO:0009554: megasporogenesis6.11E-04
31GO:0042026: protein refolding6.11E-04
32GO:0015801: aromatic amino acid transport6.63E-04
33GO:0030490: maturation of SSU-rRNA6.63E-04
34GO:0006434: seryl-tRNA aminoacylation6.63E-04
35GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.63E-04
36GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.63E-04
37GO:0006407: rRNA export from nucleus6.63E-04
38GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process6.63E-04
39GO:0001510: RNA methylation1.18E-03
40GO:0008033: tRNA processing1.21E-03
41GO:0010197: polar nucleus fusion1.33E-03
42GO:0009651: response to salt stress1.42E-03
43GO:0045905: positive regulation of translational termination1.43E-03
44GO:0009156: ribonucleoside monophosphate biosynthetic process1.43E-03
45GO:2000072: regulation of defense response to fungus, incompatible interaction1.43E-03
46GO:0045901: positive regulation of translational elongation1.43E-03
47GO:0048569: post-embryonic animal organ development1.43E-03
48GO:0006452: translational frameshifting1.43E-03
49GO:0010198: synergid death1.43E-03
50GO:0009967: positive regulation of signal transduction1.43E-03
51GO:0015786: UDP-glucose transport1.43E-03
52GO:0051788: response to misfolded protein1.43E-03
53GO:0006413: translational initiation2.02E-03
54GO:0009793: embryo development ending in seed dormancy2.27E-03
55GO:1904278: positive regulation of wax biosynthetic process2.36E-03
56GO:0009150: purine ribonucleotide metabolic process2.36E-03
57GO:0045793: positive regulation of cell size2.36E-03
58GO:0015783: GDP-fucose transport2.36E-03
59GO:0034227: tRNA thio-modification2.36E-03
60GO:0042256: mature ribosome assembly2.36E-03
61GO:0090506: axillary shoot meristem initiation2.36E-03
62GO:0010452: histone H3-K36 methylation2.36E-03
63GO:0006954: inflammatory response2.36E-03
64GO:0046168: glycerol-3-phosphate catabolic process2.36E-03
65GO:0032940: secretion by cell2.36E-03
66GO:0006820: anion transport2.60E-03
67GO:0006446: regulation of translational initiation3.34E-03
68GO:0006511: ubiquitin-dependent protein catabolic process3.34E-03
69GO:0009855: determination of bilateral symmetry3.43E-03
70GO:0009558: embryo sac cellularization3.43E-03
71GO:0001676: long-chain fatty acid metabolic process3.43E-03
72GO:0046513: ceramide biosynthetic process3.43E-03
73GO:0032877: positive regulation of DNA endoreduplication3.43E-03
74GO:0046836: glycolipid transport3.43E-03
75GO:0033617: mitochondrial respiratory chain complex IV assembly3.43E-03
76GO:0006166: purine ribonucleoside salvage3.43E-03
77GO:0070301: cellular response to hydrogen peroxide3.43E-03
78GO:0051085: chaperone mediated protein folding requiring cofactor3.43E-03
79GO:0006241: CTP biosynthetic process3.43E-03
80GO:0072334: UDP-galactose transmembrane transport3.43E-03
81GO:0009647: skotomorphogenesis3.43E-03
82GO:0006072: glycerol-3-phosphate metabolic process3.43E-03
83GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity3.43E-03
84GO:0006165: nucleoside diphosphate phosphorylation3.43E-03
85GO:0032981: mitochondrial respiratory chain complex I assembly3.43E-03
86GO:0006228: UTP biosynthetic process3.43E-03
87GO:0006164: purine nucleotide biosynthetic process3.43E-03
88GO:0006168: adenine salvage3.43E-03
89GO:0009553: embryo sac development3.75E-03
90GO:0006414: translational elongation4.17E-03
91GO:2000032: regulation of secondary shoot formation4.63E-03
92GO:0009165: nucleotide biosynthetic process4.63E-03
93GO:0051781: positive regulation of cell division4.63E-03
94GO:0042274: ribosomal small subunit biogenesis4.63E-03
95GO:0006183: GTP biosynthetic process4.63E-03
96GO:0010363: regulation of plant-type hypersensitive response4.63E-03
97GO:0042273: ribosomal large subunit biogenesis4.63E-03
98GO:0009116: nucleoside metabolic process4.65E-03
99GO:0097428: protein maturation by iron-sulfur cluster transfer5.95E-03
100GO:0007029: endoplasmic reticulum organization5.95E-03
101GO:1902183: regulation of shoot apical meristem development5.95E-03
102GO:0044209: AMP salvage5.95E-03
103GO:0045116: protein neddylation5.95E-03
104GO:0015031: protein transport6.05E-03
105GO:0001731: formation of translation preinitiation complex7.38E-03
106GO:0016070: RNA metabolic process7.38E-03
107GO:0051568: histone H3-K4 methylation7.38E-03
108GO:0000470: maturation of LSU-rRNA7.38E-03
109GO:0000741: karyogamy7.38E-03
110GO:0008283: cell proliferation7.41E-03
111GO:0009965: leaf morphogenesis8.61E-03
112GO:0000413: protein peptidyl-prolyl isomerization8.65E-03
113GO:1901001: negative regulation of response to salt stress8.93E-03
114GO:0000911: cytokinesis by cell plate formation8.93E-03
115GO:0009612: response to mechanical stimulus8.93E-03
116GO:0032880: regulation of protein localization1.06E-02
117GO:0048528: post-embryonic root development1.06E-02
118GO:0080186: developmental vegetative growth1.06E-02
119GO:0051603: proteolysis involved in cellular protein catabolic process1.14E-02
120GO:0050821: protein stabilization1.23E-02
121GO:0031540: regulation of anthocyanin biosynthetic process1.23E-02
122GO:0009690: cytokinin metabolic process1.23E-02
123GO:0030163: protein catabolic process1.32E-02
124GO:0001558: regulation of cell growth1.42E-02
125GO:0010204: defense response signaling pathway, resistance gene-independent1.42E-02
126GO:0006189: 'de novo' IMP biosynthetic process1.62E-02
127GO:0048589: developmental growth1.62E-02
128GO:0015780: nucleotide-sugar transport1.62E-02
129GO:0098656: anion transmembrane transport1.62E-02
130GO:0007338: single fertilization1.62E-02
131GO:0046685: response to arsenic-containing substance1.62E-02
132GO:0009245: lipid A biosynthetic process1.62E-02
133GO:0048507: meristem development1.62E-02
134GO:0042761: very long-chain fatty acid biosynthetic process1.82E-02
135GO:0010449: root meristem growth1.82E-02
136GO:0045036: protein targeting to chloroplast2.03E-02
137GO:0016441: posttranscriptional gene silencing2.03E-02
138GO:0009870: defense response signaling pathway, resistance gene-dependent2.03E-02
139GO:0048229: gametophyte development2.25E-02
140GO:0006378: mRNA polyadenylation2.25E-02
141GO:0010015: root morphogenesis2.25E-02
142GO:0006913: nucleocytoplasmic transport2.25E-02
143GO:0015770: sucrose transport2.25E-02
144GO:0006352: DNA-templated transcription, initiation2.25E-02
145GO:0016925: protein sumoylation2.48E-02
146GO:0006890: retrograde vesicle-mediated transport, Golgi to ER2.48E-02
147GO:0006790: sulfur compound metabolic process2.48E-02
148GO:0010043: response to zinc ion2.55E-02
149GO:0010102: lateral root morphogenesis2.72E-02
150GO:0048467: gynoecium development2.96E-02
151GO:0009908: flower development3.18E-02
152GO:0090351: seedling development3.21E-02
153GO:0006406: mRNA export from nucleus3.74E-02
154GO:0006289: nucleotide-excision repair3.74E-02
155GO:0009644: response to high light intensity3.89E-02
156GO:0008643: carbohydrate transport3.89E-02
157GO:0051302: regulation of cell division4.01E-02
158GO:0008380: RNA splicing4.22E-02
159GO:0003333: amino acid transmembrane transport4.29E-02
160GO:0051260: protein homooligomerization4.29E-02
161GO:0010431: seed maturation4.29E-02
162GO:0007005: mitochondrion organization4.57E-02
163GO:0016226: iron-sulfur cluster assembly4.57E-02
164GO:0040007: growth4.86E-02
165GO:0071215: cellular response to abscisic acid stimulus4.86E-02
RankGO TermAdjusted P value
1GO:1990259: histone-glutamine methyltransferase activity0.00E+00
2GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
3GO:0016881: acid-amino acid ligase activity0.00E+00
4GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity0.00E+00
5GO:0003735: structural constituent of ribosome1.40E-194
6GO:0003729: mRNA binding1.39E-37
7GO:0019843: rRNA binding1.81E-14
8GO:0004298: threonine-type endopeptidase activity2.67E-09
9GO:0003723: RNA binding3.87E-08
10GO:0008233: peptidase activity3.26E-06
11GO:0044183: protein binding involved in protein folding9.84E-06
12GO:0008649: rRNA methyltransferase activity6.18E-05
13GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity9.50E-05
14GO:0008097: 5S rRNA binding1.30E-04
15GO:0001055: RNA polymerase II activity1.33E-04
16GO:0001054: RNA polymerase I activity2.08E-04
17GO:0001056: RNA polymerase III activity2.53E-04
18GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity6.63E-04
19GO:0035614: snRNA stem-loop binding6.63E-04
20GO:0016817: hydrolase activity, acting on acid anhydrides6.63E-04
21GO:0000824: inositol tetrakisphosphate 3-kinase activity6.63E-04
22GO:0004828: serine-tRNA ligase activity6.63E-04
23GO:0047326: inositol tetrakisphosphate 5-kinase activity6.63E-04
24GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity6.63E-04
25GO:0005080: protein kinase C binding6.63E-04
26GO:0030515: snoRNA binding7.81E-04
27GO:0051082: unfolded protein binding8.72E-04
28GO:0015288: porin activity9.70E-04
29GO:0043022: ribosome binding9.70E-04
30GO:0008308: voltage-gated anion channel activity1.18E-03
31GO:0030619: U1 snRNA binding1.43E-03
32GO:0050291: sphingosine N-acyltransferase activity1.43E-03
33GO:0019781: NEDD8 activating enzyme activity1.43E-03
34GO:0015173: aromatic amino acid transmembrane transporter activity1.43E-03
35GO:0004750: ribulose-phosphate 3-epimerase activity1.43E-03
36GO:0043141: ATP-dependent 5'-3' DNA helicase activity1.43E-03
37GO:0005078: MAP-kinase scaffold activity1.43E-03
38GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.83E-03
39GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.28E-03
40GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity2.36E-03
41GO:0005457: GDP-fucose transmembrane transporter activity2.36E-03
42GO:0015462: ATPase-coupled protein transmembrane transporter activity2.36E-03
43GO:0070181: small ribosomal subunit rRNA binding2.36E-03
44GO:0015266: protein channel activity2.96E-03
45GO:0003743: translation initiation factor activity3.02E-03
46GO:0004550: nucleoside diphosphate kinase activity3.43E-03
47GO:0047627: adenylylsulfatase activity3.43E-03
48GO:0017089: glycolipid transporter activity3.43E-03
49GO:0004749: ribose phosphate diphosphokinase activity3.43E-03
50GO:0003999: adenine phosphoribosyltransferase activity3.43E-03
51GO:0005460: UDP-glucose transmembrane transporter activity3.43E-03
52GO:0010011: auxin binding4.63E-03
53GO:0051861: glycolipid binding4.63E-03
54GO:0070628: proteasome binding4.63E-03
55GO:0000166: nucleotide binding4.78E-03
56GO:0003746: translation elongation factor activity5.35E-03
57GO:0031386: protein tag5.95E-03
58GO:0005459: UDP-galactose transmembrane transporter activity5.95E-03
59GO:0008641: small protein activating enzyme activity5.95E-03
60GO:0004888: transmembrane signaling receptor activity5.95E-03
61GO:0005275: amine transmembrane transporter activity5.95E-03
62GO:0008514: organic anion transmembrane transporter activity7.36E-03
63GO:0031593: polyubiquitin binding7.38E-03
64GO:0031177: phosphopantetheine binding7.38E-03
65GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity7.38E-03
66GO:0000035: acyl binding8.93E-03
67GO:0102391: decanoate--CoA ligase activity8.93E-03
68GO:0004467: long-chain fatty acid-CoA ligase activity1.06E-02
69GO:0005338: nucleotide-sugar transmembrane transporter activity1.06E-02
70GO:0008235: metalloexopeptidase activity1.06E-02
71GO:0042162: telomeric DNA binding1.06E-02
72GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process1.23E-02
73GO:0008135: translation factor activity, RNA binding1.42E-02
74GO:0000989: transcription factor activity, transcription factor binding1.62E-02
75GO:0008327: methyl-CpG binding2.25E-02
76GO:0008515: sucrose transmembrane transporter activity2.25E-02
77GO:0046961: proton-transporting ATPase activity, rotational mechanism2.25E-02
78GO:0031072: heat shock protein binding2.72E-02
79GO:0003697: single-stranded DNA binding2.79E-02
80GO:0051119: sugar transmembrane transporter activity3.21E-02
81GO:0043130: ubiquitin binding3.74E-02
82GO:0005528: FK506 binding3.74E-02
83GO:0051087: chaperone binding4.01E-02
84GO:0036459: thiol-dependent ubiquitinyl hydrolase activity4.29E-02
RankGO TermAdjusted P value
1GO:0043186: P granule0.00E+00
2GO:0097361: CIA complex0.00E+00
3GO:0005832: chaperonin-containing T-complex0.00E+00
4GO:0005840: ribosome4.08E-132
5GO:0022626: cytosolic ribosome3.06E-122
6GO:0022625: cytosolic large ribosomal subunit2.16E-112
7GO:0022627: cytosolic small ribosomal subunit9.92E-80
8GO:0005829: cytosol3.25E-43
9GO:0005737: cytoplasm3.24E-42
10GO:0005730: nucleolus2.59E-41
11GO:0009506: plasmodesma4.18E-27
12GO:0015934: large ribosomal subunit1.87E-20
13GO:0005774: vacuolar membrane5.54E-17
14GO:0016020: membrane4.70E-12
15GO:0015935: small ribosomal subunit5.41E-11
16GO:0000502: proteasome complex9.78E-11
17GO:0005732: small nucleolar ribonucleoprotein complex1.15E-09
18GO:0005839: proteasome core complex2.67E-09
19GO:0005773: vacuole6.87E-08
20GO:0005618: cell wall1.84E-06
21GO:0019773: proteasome core complex, alpha-subunit complex2.06E-06
22GO:0005742: mitochondrial outer membrane translocase complex2.06E-06
23GO:0071011: precatalytic spliceosome4.86E-06
24GO:0071013: catalytic step 2 spliceosome9.84E-06
25GO:0005681: spliceosomal complex1.33E-05
26GO:0005665: DNA-directed RNA polymerase II, core complex1.34E-05
27GO:0019013: viral nucleocapsid1.78E-05
28GO:0005886: plasma membrane3.53E-05
29GO:0034719: SMN-Sm protein complex6.18E-05
30GO:0005736: DNA-directed RNA polymerase I complex1.02E-04
31GO:0005685: U1 snRNP1.02E-04
32GO:0005666: DNA-directed RNA polymerase III complex1.33E-04
33GO:0015030: Cajal body1.33E-04
34GO:0009507: chloroplast1.45E-04
35GO:0000418: DNA-directed RNA polymerase IV complex1.68E-04
36GO:0005682: U5 snRNP2.20E-04
37GO:0005687: U4 snRNP3.31E-04
38GO:0097526: spliceosomal tri-snRNP complex3.31E-04
39GO:0031428: box C/D snoRNP complex4.62E-04
40GO:0000419: DNA-directed RNA polymerase V complex4.82E-04
41GO:0005689: U12-type spliceosomal complex6.11E-04
42GO:0030686: 90S preribosome6.63E-04
43GO:0005834: heterotrimeric G-protein complex7.02E-04
44GO:0005741: mitochondrial outer membrane7.10E-04
45GO:0005688: U6 snRNP9.70E-04
46GO:0005744: mitochondrial inner membrane presequence translocase complex9.90E-04
47GO:0046930: pore complex1.18E-03
48GO:0046540: U4/U6 x U5 tri-snRNP complex1.18E-03
49GO:0071010: prespliceosome1.43E-03
50GO:0005697: telomerase holoenzyme complex1.43E-03
51GO:0005686: U2 snRNP1.96E-03
52GO:0008541: proteasome regulatory particle, lid subcomplex2.27E-03
53GO:0046861: glyoxysomal membrane2.36E-03
54GO:0034715: pICln-Sm protein complex2.36E-03
55GO:0032040: small-subunit processome2.60E-03
56GO:0005849: mRNA cleavage factor complex3.43E-03
57GO:0009331: glycerol-3-phosphate dehydrogenase complex3.43E-03
58GO:0033180: proton-transporting V-type ATPase, V1 domain3.43E-03
59GO:1990726: Lsm1-7-Pat1 complex3.43E-03
60GO:0016593: Cdc73/Paf1 complex4.63E-03
61GO:0005758: mitochondrial intermembrane space4.65E-03
62GO:0000974: Prp19 complex7.38E-03
63GO:0000243: commitment complex7.38E-03
64GO:0016282: eukaryotic 43S preinitiation complex7.38E-03
65GO:0016272: prefoldin complex8.93E-03
66GO:0033290: eukaryotic 48S preinitiation complex8.93E-03
67GO:0071004: U2-type prespliceosome1.23E-02
68GO:0005743: mitochondrial inner membrane1.26E-02
69GO:0009514: glyoxysome1.42E-02
70GO:0005622: intracellular1.64E-02
71GO:0030529: intracellular ribonucleoprotein complex1.68E-02
72GO:0005788: endoplasmic reticulum lumen1.78E-02
73GO:0016604: nuclear body1.82E-02
74GO:0005852: eukaryotic translation initiation factor 3 complex2.25E-02
75GO:0048471: perinuclear region of cytoplasm2.25E-02
76GO:0031307: integral component of mitochondrial outer membrane2.48E-02
77GO:0009508: plastid chromosome2.72E-02
78GO:0005759: mitochondrial matrix3.02E-02
79GO:0005783: endoplasmic reticulum3.07E-02
80GO:0005769: early endosome3.47E-02
81GO:0070469: respiratory chain4.01E-02
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Gene type



Gene DE type