Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G04140

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0016192: vesicle-mediated transport9.94E-07
2GO:1990641: response to iron ion starvation1.54E-06
3GO:0006101: citrate metabolic process4.37E-06
4GO:0048209: regulation of vesicle targeting, to, from or within Golgi4.37E-06
5GO:0001736: establishment of planar polarity4.37E-06
6GO:0032509: endosome transport via multivesicular body sorting pathway4.37E-06
7GO:0032012: regulation of ARF protein signal transduction8.33E-06
8GO:0006517: protein deglycosylation8.33E-06
9GO:0006013: mannose metabolic process8.33E-06
10GO:0006097: glyoxylate cycle2.57E-05
11GO:0000290: deadenylation-dependent decapping of nuclear-transcribed mRNA2.57E-05
12GO:0033962: cytoplasmic mRNA processing body assembly4.09E-05
13GO:0009942: longitudinal axis specification4.09E-05
14GO:0000911: cytokinesis by cell plate formation4.09E-05
15GO:0006102: isocitrate metabolic process5.85E-05
16GO:0007155: cell adhesion5.85E-05
17GO:0006491: N-glycan processing5.85E-05
18GO:0009880: embryonic pattern specification6.80E-05
19GO:0006896: Golgi to vacuole transport9.94E-05
20GO:0006886: intracellular protein transport1.06E-04
21GO:0048765: root hair cell differentiation1.11E-04
22GO:0010540: basipetal auxin transport1.46E-04
23GO:0006487: protein N-linked glycosylation1.85E-04
24GO:0042147: retrograde transport, endosome to Golgi2.68E-04
25GO:0010087: phloem or xylem histogenesis2.82E-04
26GO:0010311: lateral root formation5.36E-04
27GO:0045087: innate immune response6.05E-04
28GO:0006099: tricarboxylic acid cycle6.22E-04
29GO:0006897: endocytosis6.76E-04
30GO:0042538: hyperosmotic salinity response8.25E-04
31GO:0009793: embryo development ending in seed dormancy1.06E-03
32GO:0009742: brassinosteroid mediated signaling pathway1.12E-03
33GO:0009826: unidimensional cell growth2.01E-03
34GO:0071555: cell wall organization7.44E-03
35GO:0006979: response to oxidative stress7.48E-03
36GO:0015031: protein transport8.80E-03
37GO:0046686: response to cadmium ion1.01E-02
RankGO TermAdjusted P value
1GO:0004572: mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity0.00E+00
2GO:0010292: GTP:GDP antiporter activity0.00E+00
3GO:0003994: aconitate hydratase activity4.37E-06
4GO:0019905: syntaxin binding1.91E-05
5GO:0005086: ARF guanyl-nucleotide exchange factor activity1.91E-05
6GO:0004559: alpha-mannosidase activity4.09E-05
7GO:0030276: clathrin binding2.97E-04
8GO:0004721: phosphoprotein phosphatase activity4.86E-04
9GO:0051539: 4 iron, 4 sulfur cluster binding6.58E-04
10GO:0003729: mRNA binding6.96E-04
11GO:0042802: identical protein binding1.81E-03
12GO:0042803: protein homodimerization activity2.77E-03
13GO:0004722: protein serine/threonine phosphatase activity2.86E-03
14GO:0030246: carbohydrate binding5.60E-03
15GO:0005507: copper ion binding5.83E-03
16GO:0005515: protein binding9.55E-03
RankGO TermAdjusted P value
1GO:0030124: AP-4 adaptor complex8.33E-06
2GO:0005905: clathrin-coated pit2.11E-04
3GO:0005802: trans-Golgi network3.78E-04
4GO:0005768: endosome4.29E-04
5GO:0000932: P-body4.36E-04
6GO:0005794: Golgi apparatus9.45E-04
7GO:0010008: endosome membrane9.79E-04
8GO:0005829: cytosol4.21E-03
9GO:0009506: plasmodesma5.83E-03
10GO:0000139: Golgi membrane9.20E-03
11GO:0005886: plasma membrane3.11E-02
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Gene type



Gene DE type