co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G04040

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905177: tracheary element differentiation	0.00E+00
2	GO:0010412: mannan metabolic process	0.00E+00
3	GO:0035437: maintenance of protein localization in endoplasmic reticulum	0.00E+00
4	GO:0042335: cuticle development	4.19E-08
5	GO:0000038: very long-chain fatty acid metabolic process	9.69E-08
6	GO:0010025: wax biosynthetic process	4.30E-07
7	GO:0009409: response to cold	1.91E-06
8	GO:0009631: cold acclimation	2.28E-05
9	GO:0006633: fatty acid biosynthetic process	3.30E-05
10	GO:0070417: cellular response to cold	6.58E-05
11	GO:0080051: cutin transport	1.60E-04
12	GO:0009609: response to symbiotic bacterium	1.60E-04
13	GO:0009737: response to abscisic acid	3.23E-04
14	GO:0015908: fatty acid transport	3.65E-04
15	GO:0010115: regulation of abscisic acid biosynthetic process	3.65E-04
16	GO:1901679: nucleotide transmembrane transport	3.65E-04
17	GO:0010143: cutin biosynthetic process	4.38E-04
18	GO:0006631: fatty acid metabolic process	4.77E-04
19	GO:0009062: fatty acid catabolic process	5.97E-04
20	GO:0010623: programmed cell death involved in cell development	5.97E-04
21	GO:0080121: AMP transport	5.97E-04
22	GO:0009809: lignin biosynthetic process	7.69E-04
23	GO:0006624: vacuolar protein processing	8.53E-04
24	GO:1901000: regulation of response to salt stress	8.53E-04
25	GO:0030100: regulation of endocytosis	8.53E-04
26	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	8.67E-04
27	GO:0071555: cell wall organization	8.68E-04
28	GO:0009416: response to light stimulus	9.77E-04
29	GO:0042631: cellular response to water deprivation	1.09E-03
30	GO:0010222: stem vascular tissue pattern formation	1.13E-03
31	GO:0046345: abscisic acid catabolic process	1.13E-03
32	GO:0046355: mannan catabolic process	1.13E-03
33	GO:0022622: root system development	1.13E-03
34	GO:0006552: leucine catabolic process	1.13E-03
35	GO:0010508: positive regulation of autophagy	1.13E-03
36	GO:0015867: ATP transport	1.13E-03
37	GO:0071585: detoxification of cadmium ion	1.13E-03
38	GO:0045489: pectin biosynthetic process	1.17E-03
39	GO:0006461: protein complex assembly	1.43E-03
40	GO:0006665: sphingolipid metabolic process	1.43E-03
41	GO:0009823: cytokinin catabolic process	1.43E-03
42	GO:0006656: phosphatidylcholine biosynthetic process	1.43E-03
43	GO:0000302: response to reactive oxygen species	1.44E-03
44	GO:0009828: plant-type cell wall loosening	1.74E-03
45	GO:0006574: valine catabolic process	1.76E-03
46	GO:0015866: ADP transport	1.76E-03
47	GO:0045962: positive regulation of development, heterochronic	1.76E-03
48	GO:0035435: phosphate ion transmembrane transport	1.76E-03
49	GO:0009913: epidermal cell differentiation	1.76E-03
50	GO:0047484: regulation of response to osmotic stress	1.76E-03
51	GO:1900425: negative regulation of defense response to bacterium	1.76E-03
52	GO:0098655: cation transmembrane transport	2.11E-03
53	GO:0010555: response to mannitol	2.11E-03
54	GO:0071470: cellular response to osmotic stress	2.11E-03
55	GO:0045926: negative regulation of growth	2.11E-03
56	GO:0009082: branched-chain amino acid biosynthetic process	2.11E-03
57	GO:0045490: pectin catabolic process	2.37E-03
58	GO:1902074: response to salt	2.48E-03
59	GO:0010103: stomatal complex morphogenesis	2.48E-03
60	GO:0032880: regulation of protein localization	2.48E-03
61	GO:0030497: fatty acid elongation	2.48E-03
62	GO:0050829: defense response to Gram-negative bacterium	2.48E-03
63	GO:0030244: cellulose biosynthetic process	2.69E-03
64	GO:0009690: cytokinin metabolic process	2.88E-03
65	GO:0008610: lipid biosynthetic process	2.88E-03
66	GO:0035265: organ growth	2.88E-03
67	GO:0009819: drought recovery	2.88E-03
68	GO:0042255: ribosome assembly	2.88E-03
69	GO:0006353: DNA-templated transcription, termination	2.88E-03
70	GO:0009827: plant-type cell wall modification	3.29E-03
71	GO:0098656: anion transmembrane transport	3.72E-03
72	GO:0009826: unidimensional cell growth	3.92E-03
73	GO:0042761: very long-chain fatty acid biosynthetic process	4.17E-03
74	GO:2000280: regulation of root development	4.17E-03
75	GO:0006949: syncytium formation	4.64E-03
76	GO:0030148: sphingolipid biosynthetic process	5.12E-03
77	GO:0080167: response to karrikin	5.41E-03
78	GO:0009664: plant-type cell wall organization	5.48E-03
79	GO:0042538: hyperosmotic salinity response	5.48E-03
80	GO:0016024: CDP-diacylglycerol biosynthetic process	5.62E-03
81	GO:0045037: protein import into chloroplast stroma	5.62E-03
82	GO:0051603: proteolysis involved in cellular protein catabolic process	6.09E-03
83	GO:0018107: peptidyl-threonine phosphorylation	6.14E-03
84	GO:0010588: cotyledon vascular tissue pattern formation	6.14E-03
85	GO:2000012: regulation of auxin polar transport	6.14E-03
86	GO:0043086: negative regulation of catalytic activity	6.95E-03
87	GO:0009833: plant-type primary cell wall biogenesis	7.79E-03
88	GO:0042545: cell wall modification	8.12E-03
89	GO:0006289: nucleotide-excision repair	8.38E-03
90	GO:0030150: protein import into mitochondrial matrix	8.38E-03
91	GO:0009742: brassinosteroid mediated signaling pathway	8.87E-03
92	GO:0007017: microtubule-based process	8.97E-03
93	GO:0009269: response to desiccation	9.59E-03
94	GO:0030245: cellulose catabolic process	1.02E-02
95	GO:0001944: vasculature development	1.09E-02
96	GO:0010089: xylem development	1.15E-02
97	GO:0006284: base-excision repair	1.15E-02
98	GO:0009414: response to water deprivation	1.21E-02
99	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.22E-02
100	GO:0008284: positive regulation of cell proliferation	1.22E-02
101	GO:0006979: response to oxidative stress	1.27E-02
102	GO:0000226: microtubule cytoskeleton organization	1.29E-02
103	GO:0048868: pollen tube development	1.36E-02
104	GO:0010268: brassinosteroid homeostasis	1.36E-02
105	GO:0009958: positive gravitropism	1.36E-02
106	GO:0030154: cell differentiation	1.43E-02
107	GO:0010150: leaf senescence	1.45E-02
108	GO:0010183: pollen tube guidance	1.50E-02
109	GO:0009749: response to glucose	1.50E-02
110	GO:0006635: fatty acid beta-oxidation	1.58E-02
111	GO:0016132: brassinosteroid biosynthetic process	1.58E-02
112	GO:0071554: cell wall organization or biogenesis	1.58E-02
113	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.62E-02
114	GO:0009739: response to gibberellin	1.62E-02
115	GO:0032502: developmental process	1.65E-02
116	GO:0010583: response to cyclopentenone	1.65E-02
117	GO:0010090: trichome morphogenesis	1.73E-02
118	GO:0015031: protein transport	1.80E-02
119	GO:0006310: DNA recombination	1.81E-02
120	GO:0016125: sterol metabolic process	1.81E-02
121	GO:0009639: response to red or far red light	1.81E-02
122	GO:0009611: response to wounding	1.89E-02
123	GO:0006904: vesicle docking involved in exocytosis	1.89E-02
124	GO:0009911: positive regulation of flower development	2.05E-02
125	GO:0006508: proteolysis	2.34E-02
126	GO:0006970: response to osmotic stress	2.42E-02
127	GO:0009832: plant-type cell wall biogenesis	2.56E-02
128	GO:0048767: root hair elongation	2.56E-02
129	GO:0009834: plant-type secondary cell wall biogenesis	2.65E-02
130	GO:0009651: response to salt stress	2.71E-02
131	GO:0007568: aging	2.74E-02
132	GO:0048527: lateral root development	2.74E-02
133	GO:0010200: response to chitin	2.89E-02
134	GO:0016051: carbohydrate biosynthetic process	2.93E-02
135	GO:0009637: response to blue light	2.93E-02
136	GO:0006839: mitochondrial transport	3.21E-02
137	GO:0010114: response to red light	3.51E-02
138	GO:0009744: response to sucrose	3.51E-02
139	GO:0009640: photomorphogenesis	3.51E-02
140	GO:0006869: lipid transport	3.66E-02
141	GO:0009644: response to high light intensity	3.71E-02
142	GO:0009965: leaf morphogenesis	3.81E-02
143	GO:0016042: lipid catabolic process	3.99E-02
144	GO:0006281: DNA repair	4.11E-02
145	GO:0006857: oligopeptide transport	4.55E-02
146	GO:0048367: shoot system development	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	5.06E-09
2	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	5.06E-09
3	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	5.06E-09
4	GO:0052747: sinapyl alcohol dehydrogenase activity	1.66E-06
5	GO:0070330: aromatase activity	4.66E-06
6	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.04E-05
7	GO:0018685: alkane 1-monooxygenase activity	3.28E-05
8	GO:0009922: fatty acid elongase activity	3.28E-05
9	GO:0016746: transferase activity, transferring acyl groups	1.58E-04
10	GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity	1.60E-04
11	GO:0015245: fatty acid transporter activity	1.60E-04
12	GO:0008809: carnitine racemase activity	1.60E-04
13	GO:0004105: choline-phosphate cytidylyltransferase activity	1.60E-04
14	GO:0005534: galactose binding	1.60E-04
15	GO:0052631: sphingolipid delta-8 desaturase activity	1.60E-04
16	GO:0017040: ceramidase activity	3.65E-04
17	GO:0017108: 5'-flap endonuclease activity	5.97E-04
18	GO:0010295: (+)-abscisic acid 8'-hydroxylase activity	5.97E-04
19	GO:0052656: L-isoleucine transaminase activity	8.53E-04
20	GO:0004165: dodecenoyl-CoA delta-isomerase activity	8.53E-04
21	GO:0052654: L-leucine transaminase activity	8.53E-04
22	GO:0052655: L-valine transaminase activity	8.53E-04
23	GO:0003883: CTP synthase activity	8.53E-04
24	GO:0016985: mannan endo-1,4-beta-mannosidase activity	1.13E-03
25	GO:0019104: DNA N-glycosylase activity	1.13E-03
26	GO:0004084: branched-chain-amino-acid transaminase activity	1.13E-03
27	GO:0019139: cytokinin dehydrogenase activity	1.43E-03
28	GO:0080122: AMP transmembrane transporter activity	1.43E-03
29	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.76E-03
30	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.76E-03
31	GO:0016413: O-acetyltransferase activity	1.95E-03
32	GO:0005347: ATP transmembrane transporter activity	2.11E-03
33	GO:0015217: ADP transmembrane transporter activity	2.11E-03
34	GO:0046910: pectinesterase inhibitor activity	2.17E-03
35	GO:0015288: porin activity	2.88E-03
36	GO:0016209: antioxidant activity	2.88E-03
37	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.20E-03
38	GO:0015114: phosphate ion transmembrane transporter activity	6.14E-03
39	GO:0015266: protein channel activity	6.14E-03
40	GO:0045330: aspartyl esterase activity	6.51E-03
41	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	6.58E-03
42	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	6.67E-03
43	GO:0008083: growth factor activity	6.67E-03
44	GO:0008146: sulfotransferase activity	7.22E-03
45	GO:0043565: sequence-specific DNA binding	7.66E-03
46	GO:0030599: pectinesterase activity	7.88E-03
47	GO:0003924: GTPase activity	8.87E-03
48	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.02E-02
49	GO:0016760: cellulose synthase (UDP-forming) activity	1.09E-02
50	GO:0030570: pectate lyase activity	1.09E-02
51	GO:0008810: cellulase activity	1.09E-02
52	GO:0003727: single-stranded RNA binding	1.15E-02
53	GO:0004197: cysteine-type endopeptidase activity	1.65E-02
54	GO:0004518: nuclease activity	1.65E-02
55	GO:0016759: cellulose synthase activity	1.81E-02
56	GO:0003684: damaged DNA binding	1.81E-02
57	GO:0016791: phosphatase activity	1.81E-02
58	GO:0005200: structural constituent of cytoskeleton	1.89E-02
59	GO:0016788: hydrolase activity, acting on ester bonds	2.29E-02
60	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.39E-02
61	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.47E-02
62	GO:0004222: metalloendopeptidase activity	2.65E-02
63	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.74E-02
64	GO:0019825: oxygen binding	2.86E-02
65	GO:0061630: ubiquitin protein ligase activity	2.93E-02
66	GO:0052689: carboxylic ester hydrolase activity	3.08E-02
67	GO:0005525: GTP binding	3.42E-02
68	GO:0004185: serine-type carboxypeptidase activity	3.51E-02
69	GO:0005506: iron ion binding	4.33E-02
70	GO:0044212: transcription regulatory region DNA binding	4.42E-02
71	GO:0003690: double-stranded DNA binding	4.44E-02
72	GO:0015171: amino acid transmembrane transporter activity	4.66E-02
73	GO:0008234: cysteine-type peptidase activity	4.66E-02
74	GO:0008270: zinc ion binding	4.79E-02
75	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0034426: etioplast membrane	0.00E+00
2	GO:0033557: Slx1-Slx4 complex	0.00E+00
3	GO:0031357: integral component of chloroplast inner membrane	1.25E-06
4	GO:0009897: external side of plasma membrane	5.97E-04
5	GO:0009527: plastid outer membrane	1.13E-03
6	GO:0005618: cell wall	1.46E-03
7	GO:0005798: Golgi-associated vesicle	1.76E-03
8	GO:0005783: endoplasmic reticulum	2.04E-03
9	GO:0031225: anchored component of membrane	2.12E-03
10	GO:0005576: extracellular region	2.60E-03
11	GO:0005615: extracellular space	2.73E-03
12	GO:0031305: integral component of mitochondrial inner membrane	2.88E-03
13	GO:0046930: pore complex	3.29E-03
14	GO:0046658: anchored component of plasma membrane	3.37E-03
15	GO:0045298: tubulin complex	3.72E-03
16	GO:0009505: plant-type cell wall	4.98E-03
17	GO:0031012: extracellular matrix	6.14E-03
18	GO:0009508: plastid chromosome	6.14E-03
19	GO:0005789: endoplasmic reticulum membrane	7.04E-03
20	GO:0005769: early endosome	7.79E-03
21	GO:0005622: intracellular	1.03E-02
22	GO:0016020: membrane	1.09E-02
23	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.15E-02
24	GO:0005886: plasma membrane	1.40E-02
25	GO:0000145: exocyst	1.65E-02
26	GO:0071944: cell periphery	1.73E-02
27	GO:0009295: nucleoid	1.89E-02
28	GO:0005788: endoplasmic reticulum lumen	2.13E-02
29	GO:0016021: integral component of membrane	2.34E-02
30	GO:0009707: chloroplast outer membrane	2.47E-02