Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G03630

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070125: mitochondrial translational elongation0.00E+00
2GO:0061635: regulation of protein complex stability0.00E+00
3GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
4GO:0018023: peptidyl-lysine trimethylation0.00E+00
5GO:0015979: photosynthesis1.86E-14
6GO:0010207: photosystem II assembly2.70E-09
7GO:0006006: glucose metabolic process1.94E-07
8GO:0010027: thylakoid membrane organization2.82E-07
9GO:0042549: photosystem II stabilization3.88E-07
10GO:0018298: protein-chromophore linkage5.87E-07
11GO:0035304: regulation of protein dephosphorylation1.29E-06
12GO:0018026: peptidyl-lysine monomethylation1.29E-06
13GO:0010206: photosystem II repair3.56E-06
14GO:0090391: granum assembly4.78E-06
15GO:0010205: photoinhibition4.86E-06
16GO:0019253: reductive pentose-phosphate cycle1.65E-05
17GO:0009765: photosynthesis, light harvesting2.06E-05
18GO:0009768: photosynthesis, light harvesting in photosystem I3.38E-05
19GO:0010196: nonphotochemical quenching9.33E-05
20GO:0009658: chloroplast organization1.11E-04
21GO:0006096: glycolytic process1.11E-04
22GO:0048564: photosystem I assembly1.20E-04
23GO:0032544: plastid translation1.50E-04
24GO:0000481: maturation of 5S rRNA1.62E-04
25GO:1904964: positive regulation of phytol biosynthetic process1.62E-04
26GO:0065002: intracellular protein transmembrane transport1.62E-04
27GO:0043686: co-translational protein modification1.62E-04
28GO:1902458: positive regulation of stomatal opening1.62E-04
29GO:0034337: RNA folding1.62E-04
30GO:0010729: positive regulation of hydrogen peroxide biosynthetic process1.62E-04
31GO:0006419: alanyl-tRNA aminoacylation1.62E-04
32GO:0043953: protein transport by the Tat complex1.62E-04
33GO:1904966: positive regulation of vitamin E biosynthetic process1.62E-04
34GO:0015995: chlorophyll biosynthetic process2.49E-04
35GO:0009773: photosynthetic electron transport in photosystem I3.02E-04
36GO:0019684: photosynthesis, light reaction3.02E-04
37GO:0009073: aromatic amino acid family biosynthetic process3.02E-04
38GO:0006729: tetrahydrobiopterin biosynthetic process3.69E-04
39GO:1903426: regulation of reactive oxygen species biosynthetic process3.69E-04
40GO:1902326: positive regulation of chlorophyll biosynthetic process3.69E-04
41GO:0019388: galactose catabolic process3.69E-04
42GO:0010020: chloroplast fission4.47E-04
43GO:0071492: cellular response to UV-A6.04E-04
44GO:0005977: glycogen metabolic process6.04E-04
45GO:0061077: chaperone-mediated protein folding7.44E-04
46GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis8.63E-04
47GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly8.63E-04
48GO:0009067: aspartate family amino acid biosynthetic process8.63E-04
49GO:0071484: cellular response to light intensity8.63E-04
50GO:0009590: detection of gravity8.63E-04
51GO:0010021: amylopectin biosynthetic process1.14E-03
52GO:0071486: cellular response to high light intensity1.14E-03
53GO:0019464: glycine decarboxylation via glycine cleavage system1.14E-03
54GO:0006109: regulation of carbohydrate metabolic process1.14E-03
55GO:0015994: chlorophyll metabolic process1.14E-03
56GO:0006552: leucine catabolic process1.14E-03
57GO:0006546: glycine catabolic process1.14E-03
58GO:0019252: starch biosynthetic process1.37E-03
59GO:0010236: plastoquinone biosynthetic process1.45E-03
60GO:0045038: protein import into chloroplast thylakoid membrane1.45E-03
61GO:0031365: N-terminal protein amino acid modification1.45E-03
62GO:0006564: L-serine biosynthetic process1.45E-03
63GO:0042793: transcription from plastid promoter1.78E-03
64GO:0010189: vitamin E biosynthetic process2.14E-03
65GO:0009088: threonine biosynthetic process2.14E-03
66GO:1901259: chloroplast rRNA processing2.14E-03
67GO:0009772: photosynthetic electron transport in photosystem II2.52E-03
68GO:0009769: photosynthesis, light harvesting in photosystem II2.52E-03
69GO:0009645: response to low light intensity stimulus2.52E-03
70GO:0022904: respiratory electron transport chain2.52E-03
71GO:0006400: tRNA modification2.52E-03
72GO:0016311: dephosphorylation2.60E-03
73GO:2000070: regulation of response to water deprivation2.91E-03
74GO:0000105: histidine biosynthetic process2.91E-03
75GO:0009231: riboflavin biosynthetic process2.91E-03
76GO:0016559: peroxisome fission2.91E-03
77GO:0005978: glycogen biosynthetic process2.91E-03
78GO:0009642: response to light intensity2.91E-03
79GO:0030091: protein repair2.91E-03
80GO:0032508: DNA duplex unwinding2.91E-03
81GO:0006412: translation2.94E-03
82GO:0010218: response to far red light3.01E-03
83GO:0017004: cytochrome complex assembly3.33E-03
84GO:0015996: chlorophyll catabolic process3.33E-03
85GO:0007186: G-protein coupled receptor signaling pathway3.33E-03
86GO:0009637: response to blue light3.46E-03
87GO:0006754: ATP biosynthetic process3.77E-03
88GO:0006098: pentose-phosphate shunt3.77E-03
89GO:0055114: oxidation-reduction process4.13E-03
90GO:0006779: porphyrin-containing compound biosynthetic process4.22E-03
91GO:0009416: response to light stimulus4.44E-03
92GO:0010114: response to red light4.45E-03
93GO:0009744: response to sucrose4.45E-03
94GO:0006949: syncytium formation4.69E-03
95GO:0006782: protoporphyrinogen IX biosynthetic process4.69E-03
96GO:0009644: response to high light intensity4.81E-03
97GO:0018119: peptidyl-cysteine S-nitrosylation5.19E-03
98GO:0009089: lysine biosynthetic process via diaminopimelate5.19E-03
99GO:0043085: positive regulation of catalytic activity5.19E-03
100GO:0005983: starch catabolic process5.69E-03
101GO:0045037: protein import into chloroplast stroma5.69E-03
102GO:0009409: response to cold5.89E-03
103GO:0006094: gluconeogenesis6.22E-03
104GO:0009767: photosynthetic electron transport chain6.22E-03
105GO:0009266: response to temperature stimulus6.76E-03
106GO:0006302: double-strand break repair6.76E-03
107GO:0046686: response to cadmium ion7.52E-03
108GO:0000162: tryptophan biosynthetic process7.90E-03
109GO:0006636: unsaturated fatty acid biosynthetic process7.90E-03
110GO:0009269: response to desiccation9.72E-03
111GO:0051321: meiotic cell cycle9.72E-03
112GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.10E-02
113GO:0010182: sugar mediated signaling pathway1.38E-02
114GO:0048868: pollen tube development1.38E-02
115GO:0006662: glycerol ether metabolic process1.38E-02
116GO:0015986: ATP synthesis coupled proton transport1.45E-02
117GO:0009646: response to absence of light1.45E-02
118GO:0009451: RNA modification1.51E-02
119GO:0009791: post-embryonic development1.52E-02
120GO:0071554: cell wall organization or biogenesis1.60E-02
121GO:0002229: defense response to oomycetes1.60E-02
122GO:0010193: response to ozone1.60E-02
123GO:0009735: response to cytokinin1.68E-02
124GO:0009828: plant-type cell wall loosening1.83E-02
125GO:0009567: double fertilization forming a zygote and endosperm1.83E-02
126GO:0006810: transport2.30E-02
127GO:0005975: carbohydrate metabolic process2.41E-02
128GO:0009817: defense response to fungus, incompatible interaction2.51E-02
129GO:0009813: flavonoid biosynthetic process2.60E-02
130GO:0080167: response to karrikin2.84E-02
131GO:0009867: jasmonic acid mediated signaling pathway2.97E-02
132GO:0034599: cellular response to oxidative stress3.06E-02
133GO:0006631: fatty acid metabolic process3.35E-02
134GO:0045454: cell redox homeostasis3.40E-02
135GO:0032259: methylation4.01E-02
136GO:0009664: plant-type cell wall organization4.18E-02
137GO:0009793: embryo development ending in seed dormancy4.45E-02
138GO:0010224: response to UV-B4.50E-02
139GO:0042742: defense response to bacterium4.52E-02
140GO:0043086: negative regulation of catalytic activity4.94E-02
RankGO TermAdjusted P value
1GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
2GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor0.00E+00
3GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity0.00E+00
4GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
5GO:0004174: electron-transferring-flavoprotein dehydrogenase activity0.00E+00
6GO:0010242: oxygen evolving activity0.00E+00
7GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
8GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity0.00E+00
9GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
10GO:0048039: ubiquinone binding0.00E+00
11GO:0016168: chlorophyll binding3.29E-07
12GO:0019843: rRNA binding1.11E-06
13GO:0008266: poly(U) RNA binding1.65E-05
14GO:0016279: protein-lysine N-methyltransferase activity2.06E-05
15GO:0031409: pigment binding2.42E-05
16GO:0005528: FK506 binding2.87E-05
17GO:0003755: peptidyl-prolyl cis-trans isomerase activity6.28E-05
18GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity1.62E-04
19GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity1.62E-04
20GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity1.62E-04
21GO:0050308: sugar-phosphatase activity1.62E-04
22GO:0004813: alanine-tRNA ligase activity1.62E-04
23GO:0042586: peptide deformylase activity1.62E-04
24GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity1.62E-04
25GO:0019203: carbohydrate phosphatase activity1.62E-04
26GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity1.62E-04
27GO:0016597: amino acid binding1.84E-04
28GO:0047746: chlorophyllase activity3.69E-04
29GO:0042389: omega-3 fatty acid desaturase activity3.69E-04
30GO:0009977: proton motive force dependent protein transmembrane transporter activity3.69E-04
31GO:0004617: phosphoglycerate dehydrogenase activity3.69E-04
32GO:0004614: phosphoglucomutase activity3.69E-04
33GO:0019156: isoamylase activity3.69E-04
34GO:0003993: acid phosphatase activity4.14E-04
35GO:0042802: identical protein binding5.54E-04
36GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor6.04E-04
37GO:0004324: ferredoxin-NADP+ reductase activity6.04E-04
38GO:0003913: DNA photolyase activity6.04E-04
39GO:0005504: fatty acid binding6.04E-04
40GO:0051287: NAD binding6.88E-04
41GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity8.63E-04
42GO:0004072: aspartate kinase activity8.63E-04
43GO:0004375: glycine dehydrogenase (decarboxylating) activity8.63E-04
44GO:0016851: magnesium chelatase activity8.63E-04
45GO:0022891: substrate-specific transmembrane transporter activity8.83E-04
46GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.14E-03
47GO:0080032: methyl jasmonate esterase activity1.14E-03
48GO:0045430: chalcone isomerase activity1.14E-03
49GO:0043495: protein anchor1.14E-03
50GO:0003959: NADPH dehydrogenase activity1.45E-03
51GO:2001070: starch binding1.78E-03
52GO:0080030: methyl indole-3-acetate esterase activity1.78E-03
53GO:0004332: fructose-bisphosphate aldolase activity1.78E-03
54GO:0042578: phosphoric ester hydrolase activity1.78E-03
55GO:0004556: alpha-amylase activity1.78E-03
56GO:0008195: phosphatidate phosphatase activity2.14E-03
57GO:0033743: peptide-methionine (R)-S-oxide reductase activity2.14E-03
58GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity2.14E-03
59GO:0009881: photoreceptor activity2.52E-03
60GO:0019899: enzyme binding2.52E-03
61GO:0030145: manganese ion binding3.16E-03
62GO:0008135: translation factor activity, RNA binding3.33E-03
63GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water3.33E-03
64GO:0003746: translation elongation factor activity3.46E-03
65GO:0003735: structural constituent of ribosome3.49E-03
66GO:0008138: protein tyrosine/serine/threonine phosphatase activity3.77E-03
67GO:0050661: NADP binding3.93E-03
68GO:0030234: enzyme regulator activity4.69E-03
69GO:0008047: enzyme activator activity4.69E-03
70GO:0000049: tRNA binding5.69E-03
71GO:0031072: heat shock protein binding6.22E-03
72GO:0042973: glucan endo-1,3-beta-D-glucosidase activity6.76E-03
73GO:0004857: enzyme inhibitor activity8.48E-03
74GO:0003924: GTPase activity9.08E-03
75GO:0008408: 3'-5' exonuclease activity9.72E-03
76GO:0004519: endonuclease activity1.01E-02
77GO:0005509: calcium ion binding1.14E-02
78GO:0003756: protein disulfide isomerase activity1.17E-02
79GO:0047134: protein-disulfide reductase activity1.24E-02
80GO:0046933: proton-transporting ATP synthase activity, rotational mechanism1.38E-02
81GO:0004791: thioredoxin-disulfide reductase activity1.45E-02
82GO:0048038: quinone binding1.60E-02
83GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor1.75E-02
84GO:0008483: transaminase activity1.91E-02
85GO:0016491: oxidoreductase activity1.95E-02
86GO:0016413: O-acetyltransferase activity1.99E-02
87GO:0000287: magnesium ion binding2.25E-02
88GO:0008757: S-adenosylmethionine-dependent methyltransferase activity2.42E-02
89GO:0051539: 4 iron, 4 sulfur cluster binding3.26E-02
90GO:0005525: GTP binding3.50E-02
91GO:0004722: protein serine/threonine phosphatase activity3.73E-02
92GO:0005198: structural molecule activity3.86E-02
93GO:0003723: RNA binding4.72E-02
RankGO TermAdjusted P value
1GO:0009349: riboflavin synthase complex0.00E+00
2GO:0017133: mitochondrial electron transfer flavoprotein complex0.00E+00
3GO:0043235: receptor complex0.00E+00
4GO:0010368: chloroplast isoamylase complex0.00E+00
5GO:0009507: chloroplast2.32E-69
6GO:0009535: chloroplast thylakoid membrane1.05E-45
7GO:0009570: chloroplast stroma2.84E-35
8GO:0009579: thylakoid4.63E-29
9GO:0009534: chloroplast thylakoid5.24E-29
10GO:0009941: chloroplast envelope5.29E-27
11GO:0009543: chloroplast thylakoid lumen6.22E-16
12GO:0030095: chloroplast photosystem II6.69E-16
13GO:0031977: thylakoid lumen2.72E-11
14GO:0010287: plastoglobule1.25E-09
15GO:0009523: photosystem II8.22E-08
16GO:0009654: photosystem II oxygen evolving complex7.24E-07
17GO:0009538: photosystem I reaction center1.72E-06
18GO:0019898: extrinsic component of membrane3.89E-06
19GO:0010319: stromule7.86E-06
20GO:0048046: apoplast2.20E-05
21GO:0009522: photosystem I9.53E-05
22GO:0031361: integral component of thylakoid membrane1.62E-04
23GO:0000791: euchromatin1.62E-04
24GO:0009783: photosystem II antenna complex1.62E-04
25GO:0009515: granal stacked thylakoid1.62E-04
26GO:0031969: chloroplast membrane1.72E-04
27GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.84E-04
28GO:0000427: plastid-encoded plastid RNA polymerase complex3.69E-04
29GO:0030870: Mre11 complex3.69E-04
30GO:0030076: light-harvesting complex5.00E-04
31GO:0009528: plastid inner membrane6.04E-04
32GO:0010007: magnesium chelatase complex6.04E-04
33GO:0033281: TAT protein transport complex6.04E-04
34GO:0042651: thylakoid membrane6.78E-04
35GO:0009532: plastid stroma7.44E-04
36GO:0042646: plastid nucleoid8.63E-04
37GO:0005960: glycine cleavage complex8.63E-04
38GO:0005840: ribosome9.87E-04
39GO:0009544: chloroplast ATP synthase complex1.14E-03
40GO:0009527: plastid outer membrane1.14E-03
41GO:0009517: PSII associated light-harvesting complex II1.14E-03
42GO:0016020: membrane1.29E-03
43GO:0055035: plastid thylakoid membrane1.45E-03
44GO:0000795: synaptonemal complex1.45E-03
45GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)1.78E-03
46GO:0009533: chloroplast stromal thylakoid2.52E-03
47GO:0009707: chloroplast outer membrane2.74E-03
48GO:0031305: integral component of mitochondrial inner membrane2.91E-03
49GO:0042644: chloroplast nucleoid3.77E-03
50GO:0005740: mitochondrial envelope4.69E-03
51GO:0032040: small-subunit processome5.69E-03
52GO:0009508: plastid chromosome6.22E-03
53GO:0000312: plastid small ribosomal subunit6.76E-03
54GO:0015935: small ribosomal subunit9.72E-03
55GO:0000785: chromatin1.67E-02
56GO:0009536: plastid1.76E-02
57GO:0009295: nucleoid1.91E-02
58GO:0015934: large ribosomal subunit2.78E-02
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Gene type



Gene DE type