co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G03610

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090627: plant epidermal cell differentiation	0.00E+00
2	GO:1905177: tracheary element differentiation	0.00E+00
3	GO:0010017: red or far-red light signaling pathway	5.83E-06
4	GO:0000023: maltose metabolic process	6.42E-05
5	GO:0000025: maltose catabolic process	6.42E-05
6	GO:0009266: response to temperature stimulus	1.23E-04
7	GO:0005976: polysaccharide metabolic process	1.55E-04
8	GO:0031648: protein destabilization	1.55E-04
9	GO:0010623: programmed cell death involved in cell development	2.63E-04
10	GO:0006284: base-excision repair	2.83E-04
11	GO:0030163: protein catabolic process	5.01E-04
12	GO:0015846: polyamine transport	5.10E-04
13	GO:0010021: amylopectin biosynthetic process	5.10E-04
14	GO:0006808: regulation of nitrogen utilization	5.10E-04
15	GO:0010023: proanthocyanidin biosynthetic process	5.10E-04
16	GO:0010600: regulation of auxin biosynthetic process	5.10E-04
17	GO:0010508: positive regulation of autophagy	5.10E-04
18	GO:0009913: epidermal cell differentiation	7.90E-04
19	GO:0000470: maturation of LSU-rRNA	7.90E-04
20	GO:0000160: phosphorelay signal transduction system	8.54E-04
21	GO:0009631: cold acclimation	9.34E-04
22	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	9.40E-04
23	GO:0010161: red light signaling pathway	1.10E-03
24	GO:0030091: protein repair	1.26E-03
25	GO:0009704: de-etiolation	1.26E-03
26	GO:0010928: regulation of auxin mediated signaling pathway	1.26E-03
27	GO:0005978: glycogen biosynthetic process	1.26E-03
28	GO:0051865: protein autoubiquitination	1.62E-03
29	GO:0010206: photosystem II repair	1.62E-03
30	GO:0005982: starch metabolic process	1.81E-03
31	GO:0006281: DNA repair	1.84E-03
32	GO:0006979: response to oxidative stress	1.91E-03
33	GO:0048829: root cap development	2.01E-03
34	GO:0031627: telomeric loop formation	2.01E-03
35	GO:0005983: starch catabolic process	2.42E-03
36	GO:0010628: positive regulation of gene expression	2.64E-03
37	GO:0009718: anthocyanin-containing compound biosynthetic process	2.64E-03
38	GO:0006094: gluconeogenesis	2.64E-03
39	GO:0010102: lateral root morphogenesis	2.64E-03
40	GO:0006289: nucleotide-excision repair	3.57E-03
41	GO:0003333: amino acid transmembrane transport	4.08E-03
42	GO:0019915: lipid storage	4.08E-03
43	GO:0007623: circadian rhythm	4.20E-03
44	GO:2000022: regulation of jasmonic acid mediated signaling pathway	4.34E-03
45	GO:0009686: gibberellin biosynthetic process	4.60E-03
46	GO:0010089: xylem development	4.87E-03
47	GO:0048825: cotyledon development	6.31E-03
48	GO:0019252: starch biosynthetic process	6.31E-03
49	GO:0000302: response to reactive oxygen species	6.61E-03
50	GO:0006310: DNA recombination	7.55E-03
51	GO:0045892: negative regulation of transcription, DNA-templated	9.78E-03
52	GO:0009834: plant-type secondary cell wall biogenesis	1.10E-02
53	GO:0006629: lipid metabolic process	1.19E-02
54	GO:0034599: cellular response to oxidative stress	1.25E-02
55	GO:0008152: metabolic process	1.31E-02
56	GO:0009409: response to cold	1.36E-02
57	GO:0009640: photomorphogenesis	1.45E-02
58	GO:0006351: transcription, DNA-templated	1.52E-02
59	GO:0009644: response to high light intensity	1.54E-02
60	GO:0009585: red, far-red light phototransduction	1.80E-02
61	GO:0006096: glycolytic process	2.02E-02
62	GO:0009740: gibberellic acid mediated signaling pathway	2.21E-02
63	GO:0055114: oxidation-reduction process	2.29E-02
64	GO:0045893: positive regulation of transcription, DNA-templated	2.43E-02
65	GO:0009058: biosynthetic process	2.81E-02
66	GO:0009845: seed germination	2.86E-02
67	GO:0042744: hydrogen peroxide catabolic process	2.97E-02
68	GO:0009739: response to gibberellin	3.69E-02
69	GO:0016567: protein ubiquitination	3.76E-02
70	GO:0006508: proteolysis	3.80E-02
71	GO:0006355: regulation of transcription, DNA-templated	4.04E-02
72	GO:0009658: chloroplast organization	4.65E-02
73	GO:0009733: response to auxin	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
2	GO:0009899: ent-kaurene synthase activity	0.00E+00
3	GO:0004134: 4-alpha-glucanotransferase activity	6.42E-05
4	GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity	6.42E-05
5	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	6.42E-05
6	GO:0018708: thiol S-methyltransferase activity	1.55E-04
7	GO:0003844: 1,4-alpha-glucan branching enzyme activity	1.55E-04
8	GO:0010297: heteropolysaccharide binding	1.55E-04
9	GO:0017108: 5'-flap endonuclease activity	2.63E-04
10	GO:0043169: cation binding	2.63E-04
11	GO:0017150: tRNA dihydrouridine synthase activity	2.63E-04
12	GO:0015203: polyamine transmembrane transporter activity	3.82E-04
13	GO:0000156: phosphorelay response regulator activity	5.01E-04
14	GO:0019104: DNA N-glycosylase activity	5.10E-04
15	GO:0008725: DNA-3-methyladenine glycosylase activity	6.45E-04
16	GO:2001070: starch binding	7.90E-04
17	GO:0004332: fructose-bisphosphate aldolase activity	7.90E-04
18	GO:0004130: cytochrome-c peroxidase activity	7.90E-04
19	GO:0004602: glutathione peroxidase activity	9.40E-04
20	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	9.40E-04
21	GO:0004033: aldo-keto reductase (NADP) activity	1.26E-03
22	GO:0015174: basic amino acid transmembrane transporter activity	1.81E-03
23	GO:0047372: acylglycerol lipase activity	2.21E-03
24	GO:0003691: double-stranded telomeric DNA binding	2.21E-03
25	GO:0004022: alcohol dehydrogenase (NAD) activity	2.64E-03
26	GO:0004190: aspartic-type endopeptidase activity	3.09E-03
27	GO:0003700: transcription factor activity, sequence-specific DNA binding	5.92E-03
28	GO:0004518: nuclease activity	6.92E-03
29	GO:0003684: damaged DNA binding	7.55E-03
30	GO:0016597: amino acid binding	8.21E-03
31	GO:0003677: DNA binding	8.97E-03
32	GO:0008236: serine-type peptidase activity	9.93E-03
33	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.22E-02
34	GO:0043621: protein self-association	1.54E-02
35	GO:0015293: symporter activity	1.58E-02
36	GO:0008289: lipid binding	1.66E-02
37	GO:0015035: protein disulfide oxidoreductase activity	2.36E-02
38	GO:0019843: rRNA binding	2.71E-02
39	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.79E-02
40	GO:0004252: serine-type endopeptidase activity	2.92E-02
41	GO:0015297: antiporter activity	3.30E-02
42	GO:0008168: methyltransferase activity	4.52E-02
43	GO:0000287: magnesium ion binding	4.58E-02
44	GO:0004601: peroxidase activity	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0033557: Slx1-Slx4 complex	0.00E+00
2	GO:0010287: plastoglobule	3.11E-04
3	GO:0009535: chloroplast thylakoid membrane	3.46E-04
4	GO:0009507: chloroplast	9.88E-04
5	GO:0009533: chloroplast stromal thylakoid	1.10E-03
6	GO:0009501: amyloplast	1.26E-03
7	GO:0000783: nuclear telomere cap complex	1.44E-03
8	GO:0009570: chloroplast stroma	2.93E-03
9	GO:0009534: chloroplast thylakoid	4.81E-03
10	GO:0009941: chloroplast envelope	5.59E-03
11	GO:0031977: thylakoid lumen	1.37E-02
12	GO:0009579: thylakoid	2.53E-02
13	GO:0009543: chloroplast thylakoid lumen	2.71E-02
14	GO:0005622: intracellular	3.75E-02