Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G03475

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0015813: L-glutamate transport0.00E+00
2GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway0.00E+00
3GO:0009583: detection of light stimulus0.00E+00
4GO:0071000: response to magnetism0.00E+00
5GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine0.00E+00
6GO:0080005: photosystem stoichiometry adjustment1.05E-08
7GO:0006013: mannose metabolic process4.13E-08
8GO:0072387: flavin adenine dinucleotide metabolic process1.04E-05
9GO:0071461: cellular response to redox state1.04E-05
10GO:0071266: 'de novo' L-methionine biosynthetic process1.04E-05
11GO:0019346: transsulfuration1.04E-05
12GO:0019343: cysteine biosynthetic process via cystathionine1.04E-05
13GO:0099402: plant organ development2.78E-05
14GO:0010343: singlet oxygen-mediated programmed cell death2.78E-05
15GO:1901529: positive regulation of anion channel activity2.78E-05
16GO:0010617: circadian regulation of calcium ion oscillation2.78E-05
17GO:0050688: regulation of defense response to virus2.78E-05
18GO:0006696: ergosterol biosynthetic process5.03E-05
19GO:1902448: positive regulation of shade avoidance5.03E-05
20GO:1901672: positive regulation of systemic acquired resistance5.03E-05
21GO:2001141: regulation of RNA biosynthetic process7.70E-05
22GO:0015729: oxaloacetate transport7.70E-05
23GO:1901332: negative regulation of lateral root development7.70E-05
24GO:1902347: response to strigolactone1.07E-04
25GO:0019676: ammonia assimilation cycle1.07E-04
26GO:0015743: malate transport1.07E-04
27GO:0016123: xanthophyll biosynthetic process1.40E-04
28GO:0009616: virus induced gene silencing1.40E-04
29GO:0071423: malate transmembrane transport1.40E-04
30GO:0016120: carotene biosynthetic process1.40E-04
31GO:0010117: photoprotection1.40E-04
32GO:0046283: anthocyanin-containing compound metabolic process1.40E-04
33GO:1901371: regulation of leaf morphogenesis1.74E-04
34GO:0060918: auxin transport1.74E-04
35GO:0006364: rRNA processing1.87E-04
36GO:0010310: regulation of hydrogen peroxide metabolic process2.11E-04
37GO:0010244: response to low fluence blue light stimulus by blue low-fluence system2.11E-04
38GO:0051510: regulation of unidimensional cell growth2.50E-04
39GO:0006401: RNA catabolic process2.50E-04
40GO:0010050: vegetative phase change2.50E-04
41GO:0000105: histidine biosynthetic process2.90E-04
42GO:0006402: mRNA catabolic process2.90E-04
43GO:0032544: plastid translation3.32E-04
44GO:0071482: cellular response to light stimulus3.32E-04
45GO:1900426: positive regulation of defense response to bacterium4.18E-04
46GO:0009638: phototropism4.18E-04
47GO:0031425: chloroplast RNA processing4.18E-04
48GO:0010267: production of ta-siRNAs involved in RNA interference4.18E-04
49GO:0045036: protein targeting to chloroplast4.63E-04
50GO:0006352: DNA-templated transcription, initiation5.09E-04
51GO:0010075: regulation of meristem growth6.04E-04
52GO:0009785: blue light signaling pathway6.04E-04
53GO:0006541: glutamine metabolic process6.53E-04
54GO:0019253: reductive pentose-phosphate cycle6.53E-04
55GO:0010025: wax biosynthetic process7.53E-04
56GO:2000377: regulation of reactive oxygen species metabolic process8.05E-04
57GO:0046777: protein autophosphorylation9.21E-04
58GO:0006284: base-excision repair1.08E-03
59GO:0016117: carotenoid biosynthetic process1.13E-03
60GO:0008033: tRNA processing1.19E-03
61GO:0010118: stomatal movement1.19E-03
62GO:0006814: sodium ion transport1.31E-03
63GO:0042752: regulation of circadian rhythm1.31E-03
64GO:0009646: response to absence of light1.31E-03
65GO:0009791: post-embryonic development1.37E-03
66GO:0051607: defense response to virus1.76E-03
67GO:0009816: defense response to bacterium, incompatible interaction1.90E-03
68GO:0015995: chlorophyll biosynthetic process2.04E-03
69GO:0018298: protein-chromophore linkage2.19E-03
70GO:0010218: response to far red light2.33E-03
71GO:0006811: ion transport2.33E-03
72GO:0009637: response to blue light2.56E-03
73GO:0010114: response to red light3.04E-03
74GO:0009640: photomorphogenesis3.04E-03
75GO:0009644: response to high light intensity3.20E-03
76GO:0006096: glycolytic process4.17E-03
77GO:0009624: response to nematode4.73E-03
78GO:0016036: cellular response to phosphate starvation6.56E-03
79GO:0046686: response to cadmium ion6.78E-03
80GO:0007623: circadian rhythm6.89E-03
81GO:0010228: vegetative to reproductive phase transition of meristem7.11E-03
82GO:0010468: regulation of gene expression7.79E-03
83GO:0006281: DNA repair1.43E-02
84GO:0006397: mRNA processing1.47E-02
85GO:0009416: response to light stimulus2.15E-02
86GO:0006457: protein folding2.59E-02
87GO:0009414: response to water deprivation3.50E-02
88GO:0009409: response to cold4.42E-02
89GO:0005975: carbohydrate metabolic process4.79E-02
RankGO TermAdjusted P value
1GO:0016833: oxo-acid-lyase activity0.00E+00
2GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
3GO:0000107: imidazoleglycerol-phosphate synthase activity0.00E+00
4GO:0046905: phytoene synthase activity0.00E+00
5GO:0004559: alpha-mannosidase activity8.09E-07
6GO:0071949: FAD binding2.61E-06
7GO:0030941: chloroplast targeting sequence binding1.04E-05
8GO:0004654: polyribonucleotide nucleotidyltransferase activity1.04E-05
9GO:0004123: cystathionine gamma-lyase activity1.04E-05
10GO:0004121: cystathionine beta-lyase activity1.04E-05
11GO:0051996: squalene synthase activity1.04E-05
12GO:0004618: phosphoglycerate kinase activity2.78E-05
13GO:0015929: hexosaminidase activity2.78E-05
14GO:0004563: beta-N-acetylhexosaminidase activity2.78E-05
15GO:0015367: oxoglutarate:malate antiporter activity2.78E-05
16GO:0004310: farnesyl-diphosphate farnesyltransferase activity2.78E-05
17GO:0003962: cystathionine gamma-synthase activity5.03E-05
18GO:0009882: blue light photoreceptor activity7.70E-05
19GO:0015131: oxaloacetate transmembrane transporter activity7.70E-05
20GO:0001053: plastid sigma factor activity1.07E-04
21GO:0051861: glycolipid binding1.07E-04
22GO:0016987: sigma factor activity1.07E-04
23GO:0005313: L-glutamate transmembrane transporter activity1.07E-04
24GO:0015140: malate transmembrane transporter activity2.50E-04
25GO:0000175: 3'-5'-exoribonuclease activity6.04E-04
26GO:0030246: carbohydrate binding2.91E-03
27GO:0003899: DNA-directed 5'-3' RNA polymerase activity3.72E-03
28GO:0019843: rRNA binding5.52E-03
29GO:0030170: pyridoxal phosphate binding5.93E-03
30GO:0042802: identical protein binding8.14E-03
31GO:0042803: protein homodimerization activity1.27E-02
32GO:0003924: GTPase activity1.43E-02
33GO:0003676: nucleic acid binding1.80E-02
34GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.62E-02
35GO:0008270: zinc ion binding2.98E-02
36GO:0005525: GTP binding3.07E-02
37GO:0016491: oxidoreductase activity4.33E-02
38GO:0004672: protein kinase activity4.68E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast8.05E-06
2GO:0016605: PML body5.03E-05
3GO:0009570: chloroplast stroma1.43E-04
4GO:0005655: nucleolar ribonuclease P complex2.11E-04
5GO:0031359: integral component of chloroplast outer membrane2.50E-04
6GO:0009706: chloroplast inner membrane2.70E-04
7GO:0046930: pore complex3.32E-04
8GO:0016604: nuclear body4.18E-04
9GO:0048471: perinuclear region of cytoplasm5.09E-04
10GO:0009536: plastid6.61E-04
11GO:0009505: plant-type cell wall6.79E-04
12GO:0009707: chloroplast outer membrane2.19E-03
13GO:0009941: chloroplast envelope3.53E-03
14GO:0005773: vacuole4.12E-03
15GO:0010287: plastoglobule5.32E-03
16GO:0031969: chloroplast membrane1.09E-02
17GO:0005774: vacuolar membrane1.51E-02
18GO:0009579: thylakoid2.44E-02
19GO:0009534: chloroplast thylakoid2.46E-02
<
Gene type



Gene DE type